Wall clock time and date at job start Tue Mar 31 2020 14:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00123 * 2 1 4 4 C 1.46905 * 111.00241 * 123.95515 * 2 1 3 5 5 C 1.52999 * 109.46944 * 66.05006 * 4 2 1 6 6 C 1.52999 * 109.46999 * 180.02562 * 5 4 2 7 7 O 1.42905 * 109.47084 * 179.97438 * 6 5 4 8 8 C 1.35794 * 116.99917 * 179.97438 * 7 6 5 9 9 C 1.38991 * 119.90359 * 179.97438 * 8 7 6 10 10 C 1.37749 * 120.09005 * 180.27482 * 9 8 7 11 11 C 1.39772 * 119.90466 * 359.48123 * 10 9 8 12 12 C 1.47732 * 120.09308 * 180.25113 * 11 10 9 13 13 C 1.39390 * 120.79256 * 130.29111 * 12 11 10 14 14 N 1.31641 * 120.65364 * 179.97438 * 13 12 11 15 15 C 1.32246 * 122.51070 * 0.02562 * 14 13 12 16 16 C 1.36437 * 121.52561 * 359.97438 * 15 14 13 17 17 C 1.41142 * 119.11553 * 359.74825 * 16 15 14 18 18 C 1.40877 * 121.11429 * 180.27620 * 17 16 15 19 19 H 1.07995 * 119.99935 * 154.67751 * 18 17 16 20 20 C 1.40156 * 119.99749 * 334.68104 * 18 17 16 21 21 N 1.30700 * 119.99805 * 344.80483 * 20 18 17 22 22 Si 1.86797 * 119.99804 * 164.80352 * 20 18 17 23 23 H 1.48504 * 109.46950 * 90.00210 * 22 20 18 24 24 H 1.48504 * 109.47019 * 209.99762 * 22 20 18 25 25 H 1.48492 * 109.47536 * 329.99727 * 22 20 18 26 26 C 1.39774 * 119.81353 * 0.54291 * 11 10 9 27 27 C 1.37738 * 119.90499 * 359.70663 * 26 11 10 28 28 H 1.09005 * 109.47076 * 296.04007 * 1 2 3 29 29 H 1.08999 * 109.47446 * 56.04566 * 1 2 3 30 30 H 1.09004 * 109.47002 * 176.04425 * 1 2 3 31 31 H 1.08997 * 109.47621 * 183.95835 * 3 2 1 32 32 H 1.09003 * 109.47070 * 303.96250 * 3 2 1 33 33 H 1.09006 * 109.46611 * 63.95356 * 3 2 1 34 34 H 1.08999 * 109.47127 * 306.04810 * 4 2 1 35 35 H 1.09000 * 109.47000 * 186.04661 * 4 2 1 36 36 H 1.09002 * 109.47607 * 59.99487 * 5 4 2 37 37 H 1.09008 * 109.47142 * 299.99965 * 5 4 2 38 38 H 1.08999 * 109.47352 * 59.99633 * 6 5 4 39 39 H 1.09000 * 109.46721 * 299.99518 * 6 5 4 40 40 H 1.07993 * 119.95463 * 0.02562 * 9 8 7 41 41 H 1.07998 * 120.04061 * 179.72395 * 10 9 8 42 42 H 1.08001 * 119.67208 * 359.97438 * 13 12 11 43 43 H 1.07996 * 119.23733 * 179.97438 * 15 14 13 44 44 H 1.08002 * 120.44190 * 179.97438 * 16 15 14 45 45 H 0.97003 * 119.99944 * 180.02562 * 21 20 18 46 46 H 1.08006 * 120.04552 * 179.72929 * 26 11 10 47 47 H 1.08003 * 119.95020 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6316 -2.2427 0.9702 6 6 2.1794 -3.0404 2.1553 7 8 1.8390 -4.4195 1.9993 8 6 2.2540 -5.2708 2.9725 9 6 1.9556 -6.6253 2.8818 10 6 2.3698 -7.4913 3.8696 11 6 3.1004 -7.0080 4.9588 12 6 3.5515 -7.9341 6.0177 13 6 4.8775 -7.9350 6.4476 14 7 5.2763 -8.7611 7.3918 15 6 4.4589 -9.6212 7.9755 16 6 3.1418 -9.7017 7.6288 17 6 2.6416 -8.8421 6.6273 18 6 1.2876 -8.8853 6.2406 19 1 0.8208 -8.0116 5.8103 20 6 0.5464 -10.0620 6.4144 21 7 1.1598 -11.1920 6.6489 22 14 -1.3181 -10.0152 6.3108 23 1 -1.7419 -10.2504 4.9071 24 1 -1.8891 -11.0722 7.1838 25 1 -1.8057 -8.6862 6.7590 26 6 3.3979 -5.6451 5.0462 27 6 2.9754 -4.7851 4.0567 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9234 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 2.0659 -2.6214 0.0450 37 1 0.5472 -2.3476 0.9322 38 1 1.7447 -2.6616 3.0803 39 1 3.2637 -2.9355 2.1937 40 1 1.3948 -6.9985 2.0377 41 1 2.1337 -8.5429 3.8006 42 1 5.5846 -7.2513 6.0016 43 1 4.8428 -10.2752 8.7445 44 1 2.4898 -10.4111 8.1168 45 1 0.6468 -12.0066 6.7688 46 1 3.9584 -5.2669 5.8884 47 1 3.2052 -3.7319 4.1233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245338852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:22 Heat of formation + Delta-G solvation = -7.200513 kcal Electronic energy + Delta-G solvation = -26189.109757 eV Core-core repulsion = 22528.681799 eV Total energy + Delta-G solvation = -3660.427958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08750 -40.18129 -38.76997 -38.01145 -36.04576 -33.85086 -32.96625 -32.10477 -31.67641 -29.37577 -28.49759 -27.94087 -27.23368 -24.36791 -24.21714 -23.30926 -22.65556 -21.71572 -21.59005 -19.52029 -18.98650 -17.52829 -17.31491 -17.00745 -16.91480 -16.30609 -16.14751 -16.13008 -15.89512 -15.65780 -15.14858 -14.65761 -14.59669 -14.45328 -14.27048 -14.25588 -13.90397 -13.39824 -13.34023 -13.27239 -13.14549 -12.87905 -12.81969 -12.68256 -12.64918 -12.39497 -12.28878 -12.08027 -11.97268 -11.68817 -11.54014 -11.44458 -11.24745 -9.99980 -9.93400 -9.80299 -9.62735 -9.34363 -8.83360 -8.55546 -6.51336 0.30898 0.54948 0.98243 1.09764 1.37066 1.48347 1.54962 2.15496 2.19777 2.75067 2.95379 3.08290 3.71492 3.88467 3.94078 4.01371 4.03522 4.10499 4.17526 4.27762 4.29004 4.39770 4.40652 4.49023 4.51890 4.59724 4.61864 4.64450 4.73025 4.74534 4.88946 4.98407 5.00238 5.01827 5.02463 5.10767 5.17171 5.21174 5.28696 5.35383 5.42611 5.53943 5.59532 5.84642 5.93430 6.02996 6.04619 6.07101 6.21123 6.51216 6.59020 6.78850 6.82567 7.72461 8.20264 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002486 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.816978 B =11261.667179 C =12708.573466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.061 3.939 5 C -0.107 4.107 6 C 0.056 3.944 7 O -0.328 6.328 8 C 0.110 3.890 9 C -0.159 4.159 10 C -0.071 4.071 11 C -0.041 4.041 12 C -0.232 4.232 13 C 0.117 3.883 14 N -0.589 5.589 15 C 0.075 3.925 16 C -0.229 4.229 17 C 0.114 3.886 18 C -0.458 4.458 19 H 0.082 0.918 20 C 0.041 3.959 21 N -0.807 5.807 22 Si 0.976 3.024 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.260 1.260 26 C -0.089 4.089 27 C -0.200 4.200 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.115 0.885 45 H 0.293 0.707 46 H 0.130 0.870 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 18.766 -10.438 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.288 5.288 3 C -0.124 4.124 4 C -0.067 4.067 5 C -0.145 4.145 6 C -0.019 4.019 7 O -0.243 6.243 8 C 0.065 3.935 9 C -0.178 4.178 10 C -0.089 4.089 11 C -0.042 4.042 12 C -0.237 4.237 13 C -0.040 4.040 14 N -0.304 5.304 15 C -0.073 4.073 16 C -0.251 4.251 17 C 0.106 3.894 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.177 4.177 21 N -0.432 5.432 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.188 1.188 25 H -0.184 1.184 26 C -0.108 4.108 27 C -0.218 4.218 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.130 0.870 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.133 0.867 45 H 0.105 0.895 46 H 0.148 0.852 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.207 18.242 -10.707 21.266 hybrid contribution -1.754 -0.198 0.827 1.949 sum -3.961 18.043 -9.880 20.949 Atomic orbital electron populations 1.22492 0.86876 1.02644 1.00982 1.61934 1.08755 1.14865 1.43212 1.22430 1.01187 0.87773 1.01046 1.21969 1.01033 0.91930 0.91741 1.21422 1.01890 0.93745 0.97454 1.22894 1.00881 0.78258 0.99880 1.85965 1.74508 1.19281 1.44503 1.19012 0.95830 0.89870 0.88792 1.20401 1.05491 0.90774 1.01140 1.21072 0.96002 0.99293 0.92552 1.18615 0.98834 0.92896 0.93816 1.19823 0.94678 1.06032 1.03167 1.22506 0.93019 0.95624 0.92889 1.67370 1.38982 1.10001 1.14063 1.22030 0.90924 0.96059 0.98319 1.21905 0.96653 1.05063 1.01509 1.18154 0.93411 0.89092 0.88714 1.19680 0.94825 0.98438 1.35826 0.90033 1.26792 1.05677 0.93982 0.91273 1.69783 1.40400 1.00276 1.32716 0.85280 0.75986 0.79477 0.79642 1.18438 1.18784 1.18397 1.21195 0.99307 0.91671 0.98583 1.21253 1.04100 1.01093 0.95362 0.95347 0.90547 0.91292 0.90754 0.90567 0.95288 0.94000 0.89556 0.90746 0.91212 0.91394 0.90836 0.84812 0.87000 0.83673 0.84265 0.86672 0.89550 0.85238 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 127.69 1.19 1.42 16 2 N -0.56 -8.07 5.02 -948.83 -4.76 -12.83 16 3 C 0.02 0.25 9.57 127.69 1.22 1.47 16 4 C 0.06 0.83 4.96 86.30 0.43 1.26 16 5 C -0.11 -1.78 5.51 30.59 0.17 -1.61 16 6 C 0.06 1.08 4.74 71.98 0.34 1.42 16 7 O -0.33 -9.08 10.13 -91.24 -0.92 -10.00 16 8 C 0.11 3.48 6.70 22.63 0.15 3.63 16 9 C -0.16 -5.60 9.97 22.33 0.22 -5.38 16 10 C -0.07 -2.89 8.07 22.53 0.18 -2.71 16 11 C -0.04 -1.70 5.00 -20.03 -0.10 -1.80 16 12 C -0.23 -11.10 5.54 -19.49 -0.11 -11.21 16 13 C 0.12 5.36 10.71 85.00 0.91 6.27 16 14 N -0.59 -28.52 10.32 -196.17 -2.02 -30.55 16 15 C 0.07 3.62 11.08 84.21 0.93 4.56 16 16 C -0.23 -11.86 8.72 22.56 0.20 -11.66 16 17 C 0.11 5.97 5.59 -20.92 -0.12 5.85 16 18 C -0.46 -23.25 7.29 23.38 0.17 -23.08 16 19 H 0.08 4.11 6.71 -2.91 -0.02 4.09 16 20 C 0.04 1.95 5.22 85.33 0.45 2.40 16 21 N -0.81 -39.82 10.92 21.86 0.24 -39.58 16 22 Si 0.98 36.48 29.59 68.60 2.03 38.51 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 C -0.09 -3.12 9.54 22.52 0.21 -2.90 16 27 C -0.20 -5.92 9.02 22.33 0.20 -5.72 16 28 H 0.03 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.07 0.93 6.47 -2.38 -0.02 0.91 16 31 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 32 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.09 1.03 8.06 -2.39 -0.02 1.02 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.21 6.55 -2.38 -0.02 1.19 16 38 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 39 H 0.07 1.25 7.65 -2.39 -0.02 1.23 16 40 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.11 4.98 7.36 -2.91 -0.02 4.95 16 42 H 0.15 5.77 8.05 -2.91 -0.02 5.75 16 43 H 0.14 5.89 8.06 -2.91 -0.02 5.87 16 44 H 0.12 6.09 6.24 -2.91 -0.02 6.07 16 45 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 46 H 0.13 4.14 8.05 -2.91 -0.02 4.11 16 47 H 0.15 3.38 6.28 -2.91 -0.02 3.37 16 Total: -1.00 -59.90 384.22 2.17 -57.73 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.96 Total: 34.51 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 6.65 Total: -37.79 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -6.55 Total: -82.96 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.92 Total: -10.00 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -59.90 2.17 -57.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245338852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.530 kcal (2) G-P(sol) polarization free energy of solvation -59.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds