Wall clock time and date at job start Tue Mar 31 2020 14:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46899 * 110.99820 * 2 1 4 4 C 1.46905 * 110.99487 * 123.95205 * 2 1 3 5 5 C 1.53005 * 109.47060 * 66.04940 * 4 2 1 6 6 C 1.52994 * 109.46805 * 179.97438 * 5 4 2 7 7 O 1.42900 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.35803 * 117.00066 * 179.97438 * 7 6 5 9 9 C 1.38976 * 119.91254 * 180.02562 * 8 7 6 10 10 C 1.37754 * 120.09349 * 180.02562 * 9 8 7 11 11 C 1.39731 * 119.90657 * 359.97438 * 10 9 8 12 12 C 1.47853 * 120.08981 * 180.02562 * 11 10 9 13 13 C 1.40329 * 120.35622 * 180.22430 * 12 11 10 14 14 C 1.36627 * 118.60657 * 180.26767 * 13 12 11 15 15 C 1.40900 * 119.26385 * 359.75813 * 14 13 12 16 16 C 1.40938 * 119.67872 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99891 * 353.67327 * 16 15 14 18 18 C 1.40069 * 119.99899 * 173.67434 * 16 15 14 19 19 N 1.30730 * 120.00094 * 6.30028 * 18 16 15 20 20 Si 1.86804 * 119.99765 * 186.30358 * 18 16 15 21 21 H 1.48503 * 109.46908 * 94.98642 * 20 18 16 22 22 H 1.48499 * 109.46935 * 214.98314 * 20 18 16 23 23 H 1.48493 * 109.47139 * 334.98207 * 20 18 16 24 24 N 1.33801 * 120.64555 * 359.97438 * 15 14 13 25 25 C 1.31181 * 121.50947 * 0.02562 * 24 15 14 26 26 C 1.39729 * 119.82299 * 0.27468 * 11 10 9 27 27 C 1.37750 * 119.90747 * 359.44674 * 26 11 10 28 28 H 1.09001 * 109.47054 * 296.04628 * 1 2 3 29 29 H 1.09004 * 109.46670 * 56.05040 * 1 2 3 30 30 H 1.09004 * 109.47192 * 176.04645 * 1 2 3 31 31 H 1.08998 * 109.46721 * 183.95603 * 3 2 1 32 32 H 1.09002 * 109.47058 * 303.94677 * 3 2 1 33 33 H 1.08993 * 109.47280 * 63.95517 * 3 2 1 34 34 H 1.08995 * 109.47326 * 306.04302 * 4 2 1 35 35 H 1.09000 * 109.46549 * 186.04354 * 4 2 1 36 36 H 1.08995 * 109.47103 * 59.99262 * 5 4 2 37 37 H 1.09000 * 109.46500 * 299.99427 * 5 4 2 38 38 H 1.09001 * 109.47655 * 59.99081 * 6 5 4 39 39 H 1.09006 * 109.46950 * 299.99736 * 6 5 4 40 40 H 1.08007 * 119.95336 * 359.97438 * 9 8 7 41 41 H 1.07996 * 120.05169 * 180.02562 * 10 9 8 42 42 H 1.08001 * 120.69393 * 0.02739 * 13 12 11 43 43 H 1.08007 * 120.36711 * 179.77454 * 14 13 12 44 44 H 0.97003 * 119.99732 * 179.97438 * 19 18 16 45 45 H 1.08000 * 119.65725 * 179.97438 * 25 24 15 46 46 H 1.07998 * 120.04523 * 179.70214 * 26 11 10 47 47 H 1.08003 * 119.95424 * 180.25093 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2427 0.9704 6 6 2.1802 -3.0405 2.1549 7 8 1.8397 -4.4195 1.9991 8 6 2.2555 -5.2710 2.9719 9 6 1.9581 -6.6255 2.8809 10 6 2.3776 -7.4925 3.8658 11 6 3.1035 -7.0083 4.9572 12 6 3.5562 -7.9353 6.0163 13 6 4.2815 -7.4544 7.1172 14 6 4.6870 -8.3433 8.0722 15 6 4.3622 -9.7066 7.9265 16 6 4.7765 -10.6313 8.9062 17 1 5.4254 -10.3132 9.7088 18 6 4.3466 -11.9626 8.8389 19 7 3.6639 -12.3776 7.8041 20 14 4.7487 -13.1452 10.2280 21 1 3.6097 -13.1968 11.1794 22 1 4.9894 -14.5003 9.6702 23 1 5.9664 -12.6788 10.9383 24 7 3.6643 -10.1320 6.8672 25 6 3.2612 -9.3030 5.9339 26 6 3.3960 -5.6450 5.0476 27 6 2.9778 -4.7856 4.0555 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7045 1.8723 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 2.0657 -2.6214 0.0452 37 1 0.5472 -2.3474 0.9324 38 1 1.7463 -2.6618 3.0804 39 1 3.2645 -2.9355 2.1926 40 1 1.3966 -6.9989 2.0371 41 1 2.1465 -8.5450 3.7942 42 1 4.5177 -6.4042 7.2056 43 1 5.2500 -8.0047 8.9295 44 1 3.3666 -13.2998 7.7574 45 1 2.6999 -9.6789 5.0912 46 1 3.9526 -5.2662 5.8919 47 1 3.2069 -3.7323 4.1226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245339032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:09 Heat of formation + Delta-G solvation = 16.824953 kcal Electronic energy + Delta-G solvation = -25402.882218 eV Core-core repulsion = 21743.496083 eV Total energy + Delta-G solvation = -3659.386135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.85049 -38.52887 -38.02257 -36.83746 -33.86869 -32.87645 -31.32543 -30.94246 -30.25404 -28.39699 -28.01827 -26.76922 -25.30557 -23.64333 -22.61810 -22.12991 -21.31645 -20.66685 -20.18249 -18.04074 -17.58563 -16.53027 -16.19511 -15.80590 -15.50423 -15.46264 -15.17356 -15.05892 -14.58869 -14.03178 -13.86465 -13.61800 -13.25048 -13.08327 -12.82290 -12.78057 -12.67998 -12.41284 -12.21525 -12.17716 -12.05243 -11.81464 -11.78900 -11.41552 -11.33790 -11.17700 -11.10780 -10.83956 -10.62934 -10.61515 -10.24643 -10.00704 -9.53453 -8.81950 -8.62019 -8.56387 -8.18447 -7.67714 -7.01429 -6.58557 -4.61160 1.61413 1.79872 2.74795 2.99712 3.01666 3.03261 3.12479 3.15207 3.70321 3.81128 4.28046 4.53103 4.68673 4.71464 4.75126 4.86949 4.96031 5.02224 5.09600 5.15315 5.20307 5.21684 5.28865 5.31644 5.44000 5.51439 5.60907 5.74803 5.78060 5.79420 5.81673 5.92008 5.98945 6.08372 6.16522 6.41777 6.55592 6.56657 6.63082 6.69945 6.73854 6.80640 6.95198 7.04631 7.18085 7.28728 7.53358 7.69261 7.78756 7.90260 8.06829 8.46971 8.76159 9.96130 10.12359 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.001670 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.487205 B =16766.472523 C =17240.088586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.057 3.943 5 C -0.116 4.116 6 C 0.064 3.936 7 O -0.320 6.320 8 C 0.082 3.918 9 C -0.135 4.135 10 C -0.109 4.109 11 C 0.001 3.999 12 C -0.272 4.272 13 C -0.038 4.038 14 C -0.271 4.271 15 C 0.251 3.749 16 C -0.410 4.410 17 H 0.088 0.912 18 C 0.064 3.936 19 N -0.700 5.700 20 Si 0.912 3.088 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.259 1.259 24 N -0.488 5.488 25 C 0.154 3.846 26 C -0.112 4.112 27 C -0.193 4.193 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.277 0.723 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 18.316 -10.770 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.154 4.154 6 C -0.012 4.012 7 O -0.235 6.235 8 C 0.038 3.962 9 C -0.154 4.154 10 C -0.127 4.127 11 C 0.000 4.000 12 C -0.278 4.278 13 C -0.062 4.062 14 C -0.293 4.293 15 C 0.128 3.872 16 C -0.440 4.440 17 H 0.106 0.894 18 C -0.164 4.164 19 N -0.320 5.320 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.183 1.183 24 N -0.199 5.199 25 C -0.015 4.015 26 C -0.130 4.130 27 C -0.212 4.212 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.236 16.932 -11.454 20.876 hybrid contribution 0.191 1.072 1.589 1.926 sum -4.045 18.003 -9.865 20.924 Atomic orbital electron populations 1.22482 0.87197 1.02762 1.00513 1.61935 1.08269 1.13887 1.43040 1.22390 1.00904 0.88565 1.00571 1.22013 1.00527 0.93016 0.91515 1.21492 1.02253 0.93059 0.98548 1.22578 0.99732 0.80286 0.98610 1.85946 1.74792 1.17550 1.45175 1.18870 0.98280 0.90013 0.89037 1.20233 1.04263 0.90138 1.00759 1.21026 0.98801 0.99376 0.93497 1.18819 0.95172 0.92406 0.93638 1.19014 1.15020 0.94531 0.99193 1.20641 0.94977 0.97426 0.93116 1.21419 1.10998 0.95101 1.01831 1.18672 0.88366 0.89757 0.90441 1.19763 1.23794 0.92950 1.07458 0.89426 1.26187 0.94156 0.99345 0.96682 1.70131 1.20478 1.16452 1.24955 0.86238 0.80029 0.79247 0.80976 1.19255 1.19863 1.18318 1.68799 1.14344 1.34725 1.02081 1.22783 0.93863 0.88623 0.96235 1.20948 1.00869 0.92866 0.98362 1.21002 1.04242 0.99691 0.96216 0.95541 0.91331 0.90787 0.91208 0.91229 0.95601 0.94448 0.90350 0.89939 0.90835 0.92552 0.92286 0.86016 0.85436 0.88436 0.88183 0.91181 0.85977 0.86315 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.07 0.56 0.68 16 2 N -0.55 -4.23 5.02 -251.25 -1.26 -5.49 16 3 C 0.02 0.14 9.57 60.06 0.57 0.72 16 4 C 0.06 0.43 4.96 -3.82 -0.02 0.41 16 5 C -0.12 -1.01 5.51 -26.73 -0.15 -1.16 16 6 C 0.06 0.67 4.74 37.15 0.18 0.85 16 7 O -0.32 -4.53 10.13 -19.12 -0.19 -4.72 16 8 C 0.08 1.29 6.70 -39.03 -0.26 1.03 16 9 C -0.14 -2.18 9.97 -39.49 -0.39 -2.57 16 10 C -0.11 -1.91 9.43 -39.20 -0.37 -2.28 16 11 C 0.00 0.02 5.88 -104.85 -0.62 -0.60 16 12 C -0.27 -6.04 5.92 -104.46 -0.62 -6.66 16 13 C -0.04 -0.85 9.46 -39.38 -0.37 -1.22 16 14 C -0.27 -6.48 9.76 -39.16 -0.38 -6.86 16 15 C 0.25 6.68 6.54 -84.98 -0.56 6.12 16 16 C -0.41 -10.56 9.11 -37.87 -0.35 -10.90 16 17 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 18 C 0.06 1.55 5.49 -17.33 -0.10 1.46 16 19 N -0.70 -17.96 11.47 55.55 0.64 -17.33 16 20 Si 0.91 17.74 29.57 -169.99 -5.03 12.72 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 24 N -0.49 -13.15 7.86 -10.83 -0.09 -13.24 16 25 C 0.15 3.68 10.60 -17.11 -0.18 3.49 16 26 C -0.11 -1.93 9.43 -39.20 -0.37 -2.30 16 27 C -0.19 -2.96 9.02 -39.48 -0.36 -3.32 16 28 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.50 6.47 -51.93 -0.34 0.17 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 35 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 38 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 39 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 40 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.13 2.11 6.21 -52.49 -0.33 1.78 16 42 H 0.10 1.85 6.29 -52.49 -0.33 1.52 16 43 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 44 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 45 H 0.12 2.61 6.21 -52.49 -0.33 2.28 16 46 H 0.12 1.91 6.25 -52.49 -0.33 1.58 16 47 H 0.12 1.47 6.28 -52.48 -0.33 1.14 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -29.12 383.57 -10.80 -39.92 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.88 Total: 5.47 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -3.77 Total: -23.11 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.71 Total: -36.05 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.19 Total: -4.72 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.12 -10.80 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245339032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.745 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds