Wall clock time and date at job start Tue Mar 31 2020 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46899 * 110.99820 * 2 1 4 4 C 1.46905 * 110.99487 * 123.95205 * 2 1 3 5 5 C 1.53005 * 109.47060 * 66.04940 * 4 2 1 6 6 C 1.52994 * 109.46805 * 179.97438 * 5 4 2 7 7 O 1.42900 * 109.47047 * 179.97438 * 6 5 4 8 8 C 1.35803 * 117.00066 * 179.97438 * 7 6 5 9 9 C 1.38976 * 119.91254 * 180.02562 * 8 7 6 10 10 C 1.37754 * 120.09349 * 180.02562 * 9 8 7 11 11 C 1.39731 * 119.90657 * 359.97438 * 10 9 8 12 12 C 1.47853 * 120.08981 * 180.02562 * 11 10 9 13 13 C 1.40329 * 120.35622 * 180.22430 * 12 11 10 14 14 C 1.36627 * 118.60657 * 180.26767 * 13 12 11 15 15 C 1.40900 * 119.26385 * 359.75813 * 14 13 12 16 16 C 1.40938 * 119.67872 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99891 * 353.67327 * 16 15 14 18 18 C 1.40069 * 119.99899 * 173.67434 * 16 15 14 19 19 N 1.30730 * 120.00094 * 6.30028 * 18 16 15 20 20 Si 1.86804 * 119.99765 * 186.30358 * 18 16 15 21 21 H 1.48503 * 109.46908 * 94.98642 * 20 18 16 22 22 H 1.48499 * 109.46935 * 214.98314 * 20 18 16 23 23 H 1.48493 * 109.47139 * 334.98207 * 20 18 16 24 24 N 1.33801 * 120.64555 * 359.97438 * 15 14 13 25 25 C 1.31181 * 121.50947 * 0.02562 * 24 15 14 26 26 C 1.39729 * 119.82299 * 0.27468 * 11 10 9 27 27 C 1.37750 * 119.90747 * 359.44674 * 26 11 10 28 28 H 1.09001 * 109.47054 * 296.04628 * 1 2 3 29 29 H 1.09004 * 109.46670 * 56.05040 * 1 2 3 30 30 H 1.09004 * 109.47192 * 176.04645 * 1 2 3 31 31 H 1.08998 * 109.46721 * 183.95603 * 3 2 1 32 32 H 1.09002 * 109.47058 * 303.94677 * 3 2 1 33 33 H 1.08993 * 109.47280 * 63.95517 * 3 2 1 34 34 H 1.08995 * 109.47326 * 306.04302 * 4 2 1 35 35 H 1.09000 * 109.46549 * 186.04354 * 4 2 1 36 36 H 1.08995 * 109.47103 * 59.99262 * 5 4 2 37 37 H 1.09000 * 109.46500 * 299.99427 * 5 4 2 38 38 H 1.09001 * 109.47655 * 59.99081 * 6 5 4 39 39 H 1.09006 * 109.46950 * 299.99736 * 6 5 4 40 40 H 1.08007 * 119.95336 * 359.97438 * 9 8 7 41 41 H 1.07996 * 120.05169 * 180.02562 * 10 9 8 42 42 H 1.08001 * 120.69393 * 0.02739 * 13 12 11 43 43 H 1.08007 * 120.36711 * 179.77454 * 14 13 12 44 44 H 0.97003 * 119.99732 * 179.97438 * 19 18 16 45 45 H 1.08000 * 119.65725 * 179.97438 * 25 24 15 46 46 H 1.07998 * 120.04523 * 179.70214 * 26 11 10 47 47 H 1.08003 * 119.95424 * 180.25093 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2427 0.9704 6 6 2.1802 -3.0405 2.1549 7 8 1.8397 -4.4195 1.9991 8 6 2.2555 -5.2710 2.9719 9 6 1.9581 -6.6255 2.8809 10 6 2.3776 -7.4925 3.8658 11 6 3.1035 -7.0083 4.9572 12 6 3.5562 -7.9353 6.0163 13 6 4.2815 -7.4544 7.1172 14 6 4.6870 -8.3433 8.0722 15 6 4.3622 -9.7066 7.9265 16 6 4.7765 -10.6313 8.9062 17 1 5.4254 -10.3132 9.7088 18 6 4.3466 -11.9626 8.8389 19 7 3.6639 -12.3776 7.8041 20 14 4.7487 -13.1452 10.2280 21 1 3.6097 -13.1968 11.1794 22 1 4.9894 -14.5003 9.6702 23 1 5.9664 -12.6788 10.9383 24 7 3.6643 -10.1320 6.8672 25 6 3.2612 -9.3030 5.9339 26 6 3.3960 -5.6450 5.0476 27 6 2.9778 -4.7856 4.0555 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7045 1.8723 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 2.0657 -2.6214 0.0452 37 1 0.5472 -2.3474 0.9324 38 1 1.7463 -2.6618 3.0804 39 1 3.2645 -2.9355 2.1926 40 1 1.3966 -6.9989 2.0371 41 1 2.1465 -8.5450 3.7942 42 1 4.5177 -6.4042 7.2056 43 1 5.2500 -8.0047 8.9295 44 1 3.3666 -13.2998 7.7574 45 1 2.6999 -9.6789 5.0912 46 1 3.9526 -5.2662 5.8919 47 1 3.2069 -3.7323 4.1226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245339032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:08 Heat of formation + Delta-G solvation = 1.417453 kcal Electronic energy + Delta-G solvation = -25403.550337 eV Core-core repulsion = 21743.496083 eV Total energy + Delta-G solvation = -3660.054255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09141 -40.12135 -38.79142 -38.07103 -35.60375 -33.78104 -32.88286 -32.53004 -31.73796 -29.93507 -28.50179 -27.66779 -26.87368 -24.77913 -23.99680 -23.53054 -22.42354 -21.75230 -21.59730 -19.51190 -19.08356 -17.52858 -17.33253 -17.28033 -16.81215 -16.23991 -16.18221 -16.14611 -15.64857 -15.58833 -15.02574 -14.68717 -14.66784 -14.45333 -14.29259 -14.17221 -13.77025 -13.45177 -13.35532 -13.26146 -12.97443 -12.79280 -12.72810 -12.67972 -12.60173 -12.44099 -12.28474 -12.18943 -12.05202 -11.77475 -11.54145 -11.48440 -11.20825 -10.30139 -9.93921 -9.86434 -9.52166 -9.34912 -8.58313 -8.36880 -6.47660 0.12699 0.49428 1.06240 1.27540 1.40299 1.55326 1.58310 2.19406 2.20050 2.71480 3.07688 3.09108 3.86420 3.88057 3.93993 3.96831 4.06627 4.09443 4.14537 4.23250 4.27402 4.38417 4.39436 4.39752 4.48575 4.52095 4.57035 4.63319 4.70930 4.72627 4.78829 4.85454 4.96136 4.99528 5.01984 5.10078 5.13556 5.16643 5.20173 5.35446 5.42068 5.47561 5.53600 5.76592 5.92453 6.03061 6.04627 6.06288 6.09180 6.24994 6.56452 6.65819 6.90138 8.12960 8.37000 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.001670 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.487205 B =16766.472523 C =17240.088586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.061 3.939 5 C -0.107 4.107 6 C 0.057 3.943 7 O -0.328 6.328 8 C 0.095 3.905 9 C -0.145 4.145 10 C -0.108 4.108 11 C -0.037 4.037 12 C -0.257 4.257 13 C -0.043 4.043 14 C -0.285 4.285 15 C 0.216 3.784 16 C -0.452 4.452 17 H 0.094 0.906 18 C 0.020 3.980 19 N -0.747 5.747 20 Si 0.991 3.009 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.252 1.252 24 N -0.521 5.521 25 C 0.126 3.874 26 C -0.106 4.106 27 C -0.192 4.192 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.282 0.718 45 H 0.136 0.864 46 H 0.132 0.868 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 20.879 -11.410 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.288 5.288 3 C -0.124 4.124 4 C -0.067 4.067 5 C -0.145 4.145 6 C -0.018 4.018 7 O -0.243 6.243 8 C 0.051 3.949 9 C -0.164 4.164 10 C -0.126 4.126 11 C -0.038 4.038 12 C -0.262 4.262 13 C -0.067 4.067 14 C -0.308 4.308 15 C 0.092 3.908 16 C -0.482 4.482 17 H 0.112 0.888 18 C -0.203 4.203 19 N -0.368 5.368 20 Si 0.811 3.189 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.175 1.175 24 N -0.234 5.234 25 C -0.040 4.040 26 C -0.125 4.125 27 C -0.210 4.210 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.290 19.539 -12.134 23.396 hybrid contribution 0.094 0.639 1.468 1.603 sum -4.196 20.177 -10.666 23.206 Atomic orbital electron populations 1.22498 0.86826 1.02689 1.00991 1.61941 1.08798 1.14840 1.43201 1.22427 1.01163 0.87807 1.01050 1.21972 1.00978 0.92018 0.91758 1.21416 1.01944 0.93675 0.97452 1.22871 1.00729 0.78370 0.99877 1.85962 1.74513 1.19197 1.44592 1.19052 0.96675 0.90196 0.89018 1.20433 1.04484 0.90512 1.00954 1.21115 0.98221 0.99883 0.93389 1.18800 0.97907 0.93108 0.93999 1.19329 1.12951 0.94360 0.99594 1.21006 0.94353 0.98869 0.92422 1.21619 1.11552 0.94582 1.03000 1.19139 0.89301 0.91355 0.90976 1.20086 1.25614 0.94197 1.08302 0.88760 1.27113 0.93398 1.00618 0.99122 1.70225 1.22181 1.17182 1.27184 0.85062 0.79895 0.76649 0.77326 1.18804 1.19126 1.17533 1.68729 1.15420 1.36269 1.02982 1.23121 0.94777 0.89677 0.96475 1.21134 1.00168 0.92050 0.99101 1.21284 1.03424 1.01089 0.95234 0.95325 0.90580 0.91194 0.90815 0.90572 0.95279 0.93971 0.89690 0.90802 0.91068 0.91356 0.91105 0.84234 0.85352 0.85057 0.86800 0.90702 0.84690 0.85065 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 127.69 1.19 1.40 16 2 N -0.56 -7.47 5.02 -948.80 -4.76 -12.23 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.06 0.75 4.96 86.30 0.43 1.18 16 5 C -0.11 -1.60 5.51 30.59 0.17 -1.43 16 6 C 0.06 0.99 4.74 71.98 0.34 1.33 16 7 O -0.33 -8.25 10.13 -91.34 -0.93 -9.17 16 8 C 0.10 2.72 6.70 22.63 0.15 2.87 16 9 C -0.15 -4.38 9.97 22.33 0.22 -4.16 16 10 C -0.11 -3.69 9.43 22.52 0.21 -3.48 16 11 C -0.04 -1.39 5.88 -20.01 -0.12 -1.51 16 12 C -0.26 -11.46 5.92 -19.76 -0.12 -11.58 16 13 C -0.04 -1.89 9.46 22.40 0.21 -1.68 16 14 C -0.29 -13.91 9.76 22.54 0.22 -13.69 16 15 C 0.22 12.01 6.54 40.16 0.26 12.27 16 16 C -0.45 -24.25 9.11 23.38 0.21 -24.04 16 17 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 18 C 0.02 1.02 5.49 85.30 0.47 1.49 16 19 N -0.75 -40.06 11.47 21.84 0.25 -39.81 16 20 Si 0.99 37.26 29.57 68.60 2.03 39.29 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 22 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 23 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 24 N -0.52 -29.46 7.86 -188.19 -1.48 -30.93 16 25 C 0.13 6.23 10.60 85.26 0.90 7.13 16 26 C -0.11 -3.38 9.43 22.51 0.21 -3.17 16 27 C -0.19 -5.19 9.02 22.33 0.20 -4.99 16 28 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.07 0.84 6.47 -2.38 -0.02 0.82 16 31 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 32 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.04 0.49 8.12 -2.39 -0.02 0.47 16 35 H 0.08 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.10 6.55 -2.39 -0.02 1.09 16 38 H 0.07 1.07 7.65 -2.39 -0.02 1.05 16 39 H 0.07 1.11 7.65 -2.38 -0.02 1.09 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.13 4.25 6.21 -2.91 -0.02 4.23 16 42 H 0.13 4.72 6.29 -2.91 -0.02 4.70 16 43 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 44 H 0.28 13.58 8.29 -92.71 -0.77 12.81 16 45 H 0.14 6.03 6.21 -2.91 -0.02 6.01 16 46 H 0.13 3.78 6.25 -2.91 -0.02 3.76 16 47 H 0.15 3.03 6.28 -2.91 -0.02 3.02 16 Total: -1.00 -65.04 383.57 2.48 -62.56 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.97 Total: 30.90 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 6.40 Total: -40.61 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -5.99 Total: -82.97 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.93 Total: -9.17 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -65.04 2.48 -62.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245339032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.979 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds