Wall clock time and date at job start Tue Mar 31 2020 14:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00002 * 2 1 4 4 C 1.46896 * 111.00022 * 123.95362 * 2 1 3 5 5 C 1.53004 * 109.47025 * 170.00032 * 4 2 1 6 6 C 1.53005 * 109.46765 * 180.02562 * 5 4 2 7 7 O 1.42901 * 109.46896 * 180.02562 * 6 5 4 8 8 C 1.35869 * 117.00106 * 180.02562 * 7 6 5 9 9 C 1.38839 * 119.93772 * 180.02562 * 8 7 6 10 10 C 1.37906 * 120.06264 * 180.23418 * 9 8 7 11 11 C 1.39372 * 119.93769 * 359.48670 * 10 9 8 12 12 C 1.48381 * 120.06480 * 180.23907 * 11 10 9 13 13 C 1.39728 * 120.41265 * 180.27281 * 12 11 10 14 14 N 1.31906 * 121.15001 * 179.97438 * 13 12 11 15 15 C 1.31526 * 122.12068 * 0.02636 * 14 13 12 16 16 C 1.40774 * 120.66860 * 359.97438 * 15 14 13 17 17 C 1.41437 * 120.60437 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99516 * 23.40592 * 17 16 15 19 19 C 1.39929 * 120.00485 * 203.40376 * 17 16 15 20 20 N 1.30830 * 119.99764 * 17.37873 * 19 17 16 21 21 Si 1.86801 * 120.00090 * 197.38522 * 19 17 16 22 22 H 1.48497 * 109.47122 * 89.99958 * 21 19 17 23 23 H 1.48497 * 109.46790 * 209.99610 * 21 19 17 24 24 H 1.48490 * 109.47184 * 329.99676 * 21 19 17 25 25 C 1.39145 * 120.41070 * 359.97438 * 12 11 10 26 26 C 1.39370 * 119.87118 * 0.51211 * 11 10 9 27 27 C 1.37914 * 119.93607 * 359.74308 * 26 11 10 28 28 H 1.08995 * 109.47112 * 296.04364 * 1 2 3 29 29 H 1.09002 * 109.46771 * 56.04588 * 1 2 3 30 30 H 1.09001 * 109.46924 * 176.04073 * 1 2 3 31 31 H 1.09000 * 109.47289 * 183.95024 * 3 2 1 32 32 H 1.08994 * 109.47429 * 303.95250 * 3 2 1 33 33 H 1.09006 * 109.46980 * 63.95367 * 3 2 1 34 34 H 1.09006 * 109.46877 * 50.00297 * 4 2 1 35 35 H 1.08997 * 109.47457 * 290.00555 * 4 2 1 36 36 H 1.08992 * 109.46967 * 60.00486 * 5 4 2 37 37 H 1.09000 * 109.47021 * 299.99892 * 5 4 2 38 38 H 1.09000 * 109.46921 * 60.00600 * 6 5 4 39 39 H 1.08992 * 109.47151 * 299.99972 * 6 5 4 40 40 H 1.07992 * 119.96625 * 359.94993 * 9 8 7 41 41 H 1.07997 * 120.03032 * 179.72236 * 10 9 8 42 42 H 1.08008 * 119.42519 * 359.97438 * 13 12 11 43 43 H 1.07997 * 119.66290 * 179.97438 * 15 14 13 44 44 H 0.97004 * 119.99864 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.95735 * 0.02562 * 25 12 11 46 46 H 1.07996 * 120.03460 * 179.77233 * 26 11 10 47 47 H 1.07992 * 119.97168 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0526 -1.7537 2.1548 7 8 5.4621 -1.9300 1.9989 8 6 6.1083 -2.6238 2.9722 9 6 7.4783 -2.8307 2.8823 10 6 8.1360 -3.5386 3.8662 11 6 7.4260 -4.0373 4.9569 12 6 8.1318 -4.7949 6.0198 13 6 7.4262 -5.3030 7.1136 14 7 8.0388 -5.9788 8.0664 15 6 9.3336 -6.2084 8.0393 16 6 10.1248 -5.7343 6.9758 17 6 11.5169 -5.9824 6.9477 18 1 11.9275 -6.8182 7.4947 19 6 12.3622 -5.1450 6.2113 20 7 11.9462 -3.9631 5.8348 21 14 14.0845 -5.7147 5.7656 22 1 14.0506 -6.4171 4.4577 23 1 14.9862 -4.5386 5.6725 24 1 14.5857 -6.6412 6.8122 25 6 9.5034 -5.0134 5.9365 26 6 6.0509 -3.8281 5.0444 27 6 5.3975 -3.1239 4.0549 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0828 1.3433 -0.0708 32 1 1.5899 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5089 -1.7407 1.1755 35 1 1.7974 -0.2248 2.0628 36 1 3.9909 0.0193 0.9323 37 1 3.7023 -1.4965 0.0451 38 1 3.5661 -2.7283 2.1923 39 1 3.8546 -1.2129 3.0802 40 1 8.0285 -2.4408 2.0388 41 1 9.2009 -3.7031 3.7935 42 1 6.3607 -5.1395 7.1800 43 1 9.7944 -6.7662 8.8410 44 1 12.5323 -3.3825 5.3246 45 1 10.0763 -4.6374 5.1017 46 1 5.4976 -4.2165 5.8866 47 1 4.3320 -2.9617 4.1219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245339049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:12 Heat of formation + Delta-G solvation = 7.349610 kcal Electronic energy + Delta-G solvation = -25755.437019 eV Core-core repulsion = 22095.640002 eV Total energy + Delta-G solvation = -3659.797017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.97772 -38.61588 -38.05114 -36.92290 -34.13708 -33.01114 -31.60733 -30.88682 -30.23248 -28.03317 -27.86349 -26.62440 -25.69815 -23.64451 -22.67554 -22.36676 -21.30847 -20.71497 -20.15441 -18.09813 -17.35548 -16.56976 -16.26685 -15.73965 -15.49598 -15.40702 -15.34232 -15.03462 -14.95467 -14.19180 -13.90775 -13.74970 -13.33752 -13.08613 -12.92700 -12.82386 -12.76262 -12.40833 -12.18285 -12.12424 -12.00884 -11.79903 -11.66761 -11.53064 -11.37423 -11.29521 -11.20839 -11.02500 -10.69714 -10.65456 -10.35423 -9.86577 -9.42671 -8.82899 -8.80800 -8.64865 -8.14364 -7.87496 -7.07570 -6.86193 -4.54726 1.47789 1.71756 2.66546 2.96972 3.00636 3.03301 3.05840 3.15750 3.66919 3.81564 4.21146 4.51181 4.60554 4.67445 4.72777 4.83440 4.95485 4.99991 5.04998 5.12807 5.15234 5.18461 5.25637 5.28769 5.43737 5.46939 5.50909 5.63290 5.68120 5.74137 5.74875 5.87672 5.98019 6.06194 6.30686 6.42416 6.54944 6.55988 6.60873 6.66907 6.73948 6.74379 7.00179 7.09285 7.15156 7.23687 7.62213 7.65508 7.80019 7.88239 8.36559 8.61769 8.65129 9.57539 10.00607 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.002031 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.979512 B =13783.357580 C =14901.146146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.019 3.981 4 C 0.057 3.943 5 C -0.116 4.116 6 C 0.063 3.937 7 O -0.318 6.318 8 C 0.109 3.891 9 C -0.148 4.148 10 C -0.074 4.074 11 C -0.043 4.043 12 C -0.088 4.088 13 C -0.027 4.027 14 N -0.469 5.469 15 C -0.019 4.019 16 C 0.062 3.938 17 C -0.449 4.449 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.790 5.790 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.120 4.120 26 C -0.082 4.082 27 C -0.207 4.207 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.284 0.716 45 H 0.133 0.867 46 H 0.126 0.874 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.343 8.561 -11.453 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.130 4.130 4 C -0.071 4.071 5 C -0.154 4.154 6 C -0.014 4.014 7 O -0.232 6.232 8 C 0.065 3.935 9 C -0.167 4.167 10 C -0.092 4.092 11 C -0.044 4.044 12 C -0.090 4.090 13 C -0.185 4.185 14 N -0.176 5.176 15 C -0.180 4.180 16 C 0.058 3.942 17 C -0.479 4.479 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.415 5.415 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.145 4.145 26 C -0.100 4.100 27 C -0.226 4.226 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.095 0.905 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.532 8.335 -11.480 21.036 hybrid contribution 0.841 0.623 0.009 1.046 sum -14.691 8.957 -11.471 20.680 Atomic orbital electron populations 1.22391 0.87009 1.02441 1.00587 1.61927 1.08005 1.14175 1.43017 1.22480 1.01409 0.88533 1.00533 1.22009 0.94817 0.98680 0.91559 1.21499 0.94217 1.01190 0.98487 1.22631 0.79951 0.99958 0.98821 1.85989 1.21526 1.70735 1.44964 1.18948 0.92063 0.94134 0.88396 1.20309 0.91220 1.03869 1.01283 1.21220 1.00467 0.95207 0.92260 1.18905 0.92705 0.98174 0.94631 1.19414 0.94507 0.99872 0.95192 1.21756 0.98076 1.04910 0.93778 1.66928 1.11959 1.12144 1.26604 1.22538 0.89354 1.07444 0.98707 1.18473 0.94350 0.90848 0.90541 1.19573 0.91216 1.11228 1.25882 0.89784 1.25974 1.01280 0.93656 0.93519 1.69788 1.38167 1.06083 1.27416 0.86226 0.80666 0.79359 0.80078 1.19108 1.20171 1.18413 1.21834 0.91422 1.01771 0.99506 1.21033 0.93922 0.97154 0.97868 1.21048 0.99717 1.05356 0.96455 0.95586 0.91224 0.91203 0.90794 0.91324 0.95525 0.90325 0.94415 0.90777 0.89895 0.92080 0.92332 0.85629 0.84617 0.86178 0.85599 0.90483 0.84948 0.85591 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.06 0.57 0.72 16 2 N -0.55 -4.19 5.02 -251.26 -1.26 -5.45 16 3 C 0.02 0.12 9.32 60.07 0.56 0.68 16 4 C 0.06 0.42 4.96 -3.82 -0.02 0.41 16 5 C -0.12 -1.00 5.51 -26.73 -0.15 -1.15 16 6 C 0.06 0.63 4.74 37.16 0.18 0.81 16 7 O -0.32 -4.42 10.13 -19.33 -0.20 -4.61 16 8 C 0.11 1.70 6.69 -39.14 -0.26 1.44 16 9 C -0.15 -2.44 9.97 -39.48 -0.39 -2.84 16 10 C -0.07 -1.37 9.43 -39.28 -0.37 -1.74 16 11 C -0.04 -0.86 5.88 -104.88 -0.62 -1.47 16 12 C -0.09 -2.02 5.88 -104.83 -0.62 -2.64 16 13 C -0.03 -0.63 10.60 -16.96 -0.18 -0.81 16 14 N -0.47 -11.60 10.32 -12.28 -0.13 -11.73 16 15 C -0.02 -0.49 10.96 -16.72 -0.18 -0.67 16 16 C 0.06 1.62 5.59 -106.71 -0.60 1.02 16 17 C -0.45 -11.35 9.08 -37.73 -0.34 -11.70 16 18 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.77 5.18 -17.35 -0.09 1.68 16 20 N -0.79 -19.30 10.92 55.55 0.61 -18.70 16 21 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.12 -3.00 8.16 -38.23 -0.31 -3.32 16 26 C -0.08 -1.39 9.43 -39.28 -0.37 -1.77 16 27 C -0.21 -3.10 9.02 -39.48 -0.36 -3.46 16 28 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.07 0.50 6.47 -51.93 -0.34 0.17 16 32 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.57 7.65 -51.93 -0.40 0.18 16 39 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 40 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.14 2.59 6.26 -52.49 -0.33 2.26 16 42 H 0.12 2.42 6.20 -52.48 -0.33 2.10 16 43 H 0.13 2.91 8.06 -52.49 -0.42 2.49 16 44 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 45 H 0.13 3.31 4.44 -52.49 -0.23 3.07 16 46 H 0.13 1.97 6.21 -52.49 -0.33 1.64 16 47 H 0.12 1.46 6.28 -52.49 -0.33 1.13 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -28.31 382.28 -10.57 -38.88 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.78 Total: 7.90 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -3.55 Total: -24.80 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.78 Total: -35.88 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.20 Total: -4.61 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.31 -10.57 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245339049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.232 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds