Wall clock time and date at job start Tue Mar 31 2020 14:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00002 * 2 1 4 4 C 1.46896 * 111.00022 * 123.95362 * 2 1 3 5 5 C 1.53004 * 109.47025 * 170.00032 * 4 2 1 6 6 C 1.53005 * 109.46765 * 180.02562 * 5 4 2 7 7 O 1.42901 * 109.46896 * 180.02562 * 6 5 4 8 8 C 1.35869 * 117.00106 * 180.02562 * 7 6 5 9 9 C 1.38839 * 119.93772 * 180.02562 * 8 7 6 10 10 C 1.37906 * 120.06264 * 180.23418 * 9 8 7 11 11 C 1.39372 * 119.93769 * 359.48670 * 10 9 8 12 12 C 1.48381 * 120.06480 * 180.23907 * 11 10 9 13 13 C 1.39728 * 120.41265 * 180.27281 * 12 11 10 14 14 N 1.31906 * 121.15001 * 179.97438 * 13 12 11 15 15 C 1.31526 * 122.12068 * 0.02636 * 14 13 12 16 16 C 1.40774 * 120.66860 * 359.97438 * 15 14 13 17 17 C 1.41437 * 120.60437 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99516 * 23.40592 * 17 16 15 19 19 C 1.39929 * 120.00485 * 203.40376 * 17 16 15 20 20 N 1.30830 * 119.99764 * 17.37873 * 19 17 16 21 21 Si 1.86801 * 120.00090 * 197.38522 * 19 17 16 22 22 H 1.48497 * 109.47122 * 89.99958 * 21 19 17 23 23 H 1.48497 * 109.46790 * 209.99610 * 21 19 17 24 24 H 1.48490 * 109.47184 * 329.99676 * 21 19 17 25 25 C 1.39145 * 120.41070 * 359.97438 * 12 11 10 26 26 C 1.39370 * 119.87118 * 0.51211 * 11 10 9 27 27 C 1.37914 * 119.93607 * 359.74308 * 26 11 10 28 28 H 1.08995 * 109.47112 * 296.04364 * 1 2 3 29 29 H 1.09002 * 109.46771 * 56.04588 * 1 2 3 30 30 H 1.09001 * 109.46924 * 176.04073 * 1 2 3 31 31 H 1.09000 * 109.47289 * 183.95024 * 3 2 1 32 32 H 1.08994 * 109.47429 * 303.95250 * 3 2 1 33 33 H 1.09006 * 109.46980 * 63.95367 * 3 2 1 34 34 H 1.09006 * 109.46877 * 50.00297 * 4 2 1 35 35 H 1.08997 * 109.47457 * 290.00555 * 4 2 1 36 36 H 1.08992 * 109.46967 * 60.00486 * 5 4 2 37 37 H 1.09000 * 109.47021 * 299.99892 * 5 4 2 38 38 H 1.09000 * 109.46921 * 60.00600 * 6 5 4 39 39 H 1.08992 * 109.47151 * 299.99972 * 6 5 4 40 40 H 1.07992 * 119.96625 * 359.94993 * 9 8 7 41 41 H 1.07997 * 120.03032 * 179.72236 * 10 9 8 42 42 H 1.08008 * 119.42519 * 359.97438 * 13 12 11 43 43 H 1.07997 * 119.66290 * 179.97438 * 15 14 13 44 44 H 0.97004 * 119.99864 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.95735 * 0.02562 * 25 12 11 46 46 H 1.07996 * 120.03460 * 179.77233 * 26 11 10 47 47 H 1.07992 * 119.97168 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0526 -1.7537 2.1548 7 8 5.4621 -1.9300 1.9989 8 6 6.1083 -2.6238 2.9722 9 6 7.4783 -2.8307 2.8823 10 6 8.1360 -3.5386 3.8662 11 6 7.4260 -4.0373 4.9569 12 6 8.1318 -4.7949 6.0198 13 6 7.4262 -5.3030 7.1136 14 7 8.0388 -5.9788 8.0664 15 6 9.3336 -6.2084 8.0393 16 6 10.1248 -5.7343 6.9758 17 6 11.5169 -5.9824 6.9477 18 1 11.9275 -6.8182 7.4947 19 6 12.3622 -5.1450 6.2113 20 7 11.9462 -3.9631 5.8348 21 14 14.0845 -5.7147 5.7656 22 1 14.0506 -6.4171 4.4577 23 1 14.9862 -4.5386 5.6725 24 1 14.5857 -6.6412 6.8122 25 6 9.5034 -5.0134 5.9365 26 6 6.0509 -3.8281 5.0444 27 6 5.3975 -3.1239 4.0549 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0828 1.3433 -0.0708 32 1 1.5899 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5089 -1.7407 1.1755 35 1 1.7974 -0.2248 2.0628 36 1 3.9909 0.0193 0.9323 37 1 3.7023 -1.4965 0.0451 38 1 3.5661 -2.7283 2.1923 39 1 3.8546 -1.2129 3.0802 40 1 8.0285 -2.4408 2.0388 41 1 9.2009 -3.7031 3.7935 42 1 6.3607 -5.1395 7.1800 43 1 9.7944 -6.7662 8.8410 44 1 12.5323 -3.3825 5.3246 45 1 10.0763 -4.6374 5.1017 46 1 5.4976 -4.2165 5.8866 47 1 4.3320 -2.9617 4.1219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245339049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:11 Heat of formation + Delta-G solvation = -7.517188 kcal Electronic energy + Delta-G solvation = -25756.081692 eV Core-core repulsion = 22095.640002 eV Total energy + Delta-G solvation = -3660.441690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.21826 -40.21587 -38.82186 -38.13007 -35.97563 -33.96112 -33.01326 -32.41010 -31.86731 -29.27772 -28.49951 -27.65615 -27.33742 -24.76654 -24.15651 -23.63377 -22.48715 -21.77220 -21.58651 -19.38786 -19.03506 -17.66640 -17.34669 -17.16103 -16.95320 -16.72174 -16.16644 -16.14936 -15.72604 -15.65645 -15.13439 -14.81295 -14.71644 -14.49467 -14.37274 -14.15584 -13.68733 -13.45061 -13.33857 -13.30318 -13.14185 -12.97263 -12.87452 -12.73238 -12.64249 -12.42438 -12.30290 -12.23751 -12.12880 -11.74283 -11.57288 -11.50108 -11.20575 -10.38813 -10.01952 -9.97453 -9.73971 -9.34519 -8.75957 -8.52382 -6.46772 -0.03123 0.40732 0.92559 1.24573 1.39090 1.52498 1.53221 2.12084 2.17774 2.63794 2.94691 3.06833 3.74895 3.78764 3.87303 3.91250 3.94249 4.08844 4.09064 4.20417 4.26203 4.36338 4.38838 4.43879 4.46033 4.48685 4.60512 4.64724 4.67575 4.72504 4.75033 4.84805 4.94378 4.99388 5.02397 5.09972 5.11715 5.15251 5.19735 5.22994 5.32291 5.43547 5.57259 5.78011 5.89013 5.90890 6.03441 6.05854 6.06538 6.45346 6.50176 6.74275 6.76626 7.68030 8.22917 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.002031 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.979512 B =13783.357580 C =14901.146146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.564 5.564 3 C 0.018 3.982 4 C 0.061 3.939 5 C -0.108 4.108 6 C 0.054 3.946 7 O -0.325 6.325 8 C 0.122 3.878 9 C -0.156 4.156 10 C -0.081 4.081 11 C -0.080 4.080 12 C -0.082 4.082 13 C -0.037 4.037 14 N -0.478 5.478 15 C -0.045 4.045 16 C 0.038 3.962 17 C -0.480 4.480 18 H 0.086 0.914 19 C 0.036 3.964 20 N -0.816 5.816 21 Si 0.987 3.013 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.256 1.256 25 C -0.146 4.146 26 C -0.076 4.076 27 C -0.199 4.199 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.293 0.707 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 9.455 -12.686 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.288 5.288 3 C -0.130 4.130 4 C -0.067 4.067 5 C -0.146 4.146 6 C -0.021 4.021 7 O -0.240 6.240 8 C 0.076 3.924 9 C -0.174 4.174 10 C -0.100 4.100 11 C -0.081 4.081 12 C -0.084 4.084 13 C -0.195 4.195 14 N -0.186 5.186 15 C -0.205 4.205 16 C 0.034 3.966 17 C -0.509 4.509 18 H 0.104 0.896 19 C -0.180 4.180 20 N -0.441 5.441 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.179 1.179 25 C -0.172 4.172 26 C -0.094 4.094 27 C -0.217 4.217 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.169 0.831 43 H 0.152 0.848 44 H 0.103 0.897 45 H 0.143 0.857 46 H 0.160 0.840 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.258 9.236 -12.708 23.337 hybrid contribution 1.165 0.485 0.255 1.287 sum -16.093 9.721 -12.453 22.551 Atomic orbital electron populations 1.22426 0.86053 1.02917 1.01040 1.61932 1.09002 1.14607 1.43242 1.22492 1.01167 0.88354 1.00980 1.21973 0.93771 0.99205 0.91769 1.21427 0.95102 1.00583 0.97467 1.22946 0.77854 1.01205 1.00074 1.86004 1.23693 1.69942 1.44313 1.19033 0.91822 0.92954 0.88559 1.20419 0.92190 1.03639 1.01156 1.21117 0.99862 0.96047 0.92933 1.18865 0.94144 1.00319 0.94728 1.19724 0.93985 0.98810 0.95874 1.22282 0.99495 1.04346 0.93354 1.66942 1.11779 1.12564 1.27272 1.22694 0.89826 1.08724 0.99251 1.18812 0.95195 0.91472 0.91162 1.19844 0.91559 1.12071 1.27471 0.89586 1.26831 1.05224 0.93281 0.92668 1.69836 1.39870 1.06966 1.27460 0.85120 0.75410 0.79036 0.79740 1.18613 1.19187 1.17942 1.21882 0.92608 1.03140 0.99559 1.21207 0.92646 0.96720 0.98782 1.21363 1.01408 1.03798 0.95138 0.95266 0.90624 0.90774 0.91241 0.90625 0.95319 0.89568 0.93911 0.91123 0.90778 0.90644 0.91009 0.84212 0.86354 0.83089 0.84802 0.89650 0.85724 0.84044 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.45 16 2 N -0.56 -7.43 5.02 -948.84 -4.76 -12.19 16 3 C 0.02 0.21 9.32 127.69 1.19 1.40 16 4 C 0.06 0.74 4.96 86.31 0.43 1.16 16 5 C -0.11 -1.59 5.51 30.60 0.17 -1.42 16 6 C 0.05 0.92 4.74 71.98 0.34 1.26 16 7 O -0.33 -8.11 10.13 -92.08 -0.93 -9.04 16 8 C 0.12 3.48 6.69 22.56 0.15 3.63 16 9 C -0.16 -4.98 9.97 22.34 0.22 -4.75 16 10 C -0.08 -3.08 9.43 22.46 0.21 -2.87 16 11 C -0.08 -3.15 5.88 -20.03 -0.12 -3.27 16 12 C -0.08 -3.86 5.88 -20.00 -0.12 -3.98 16 13 C -0.04 -1.70 10.60 85.04 0.90 -0.80 16 14 N -0.48 -24.05 10.32 -192.75 -1.99 -26.04 16 15 C -0.04 -2.33 10.96 85.36 0.94 -1.40 16 16 C 0.04 2.05 5.59 -21.22 -0.12 1.93 16 17 C -0.48 -25.19 9.08 23.47 0.21 -24.97 16 18 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 19 C 0.04 1.77 5.18 85.25 0.44 2.21 16 20 N -0.82 -41.04 10.92 21.82 0.24 -40.80 16 21 Si 0.99 36.69 29.59 68.60 2.03 38.72 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 25 C -0.15 -7.66 8.16 23.14 0.19 -7.47 16 26 C -0.08 -2.42 9.43 22.47 0.21 -2.21 16 27 C -0.20 -5.29 9.02 22.34 0.20 -5.09 16 28 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.07 0.85 6.47 -2.39 -0.02 0.83 16 32 H 0.07 0.74 8.12 -2.39 -0.02 0.73 16 33 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.09 0.91 8.06 -2.38 -0.02 0.89 16 35 H 0.04 0.48 8.12 -2.39 -0.02 0.46 16 36 H 0.07 1.09 6.55 -2.39 -0.02 1.08 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.10 7.65 -2.39 -0.02 1.08 16 39 H 0.07 1.06 7.66 -2.39 -0.02 1.05 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.12 4.79 6.26 -2.91 -0.02 4.77 16 42 H 0.15 5.86 6.20 -2.91 -0.02 5.84 16 43 H 0.13 6.48 8.06 -2.91 -0.02 6.46 16 44 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 45 H 0.13 6.59 4.44 -2.91 -0.01 6.58 16 46 H 0.14 4.00 6.21 -2.91 -0.02 3.99 16 47 H 0.16 3.01 6.28 -2.91 -0.02 2.99 16 Total: -1.00 -62.40 382.28 2.23 -60.17 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.97 Total: 34.35 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 6.68 Total: -45.18 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -6.51 Total: -79.03 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.93 Total: -9.04 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -62.40 2.23 -60.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245339049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.655 kcal (2) G-P(sol) polarization free energy of solvation -62.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds