Wall clock time and date at job start Tue Mar 31 2020 14:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46891 * 111.00031 * 2 1 4 4 C 1.46905 * 110.99724 * 123.95318 * 2 1 3 5 5 C 1.52998 * 109.46907 * 170.00162 * 4 2 1 6 6 C 1.53000 * 109.47203 * 179.97438 * 5 4 2 7 7 O 1.42895 * 109.47415 * 179.97438 * 6 5 4 8 8 C 1.35851 * 117.00422 * 179.97438 * 7 6 5 9 9 C 1.38851 * 119.93602 * 179.97438 * 8 7 6 10 10 C 1.37885 * 120.06439 * 179.97438 * 9 8 7 11 11 C 1.39403 * 119.93293 * 0.02562 * 10 9 8 12 12 C 1.48325 * 120.06524 * 179.97438 * 11 10 9 13 13 C 1.40067 * 120.82115 * 0.02562 * 12 11 10 14 14 C 1.38476 * 119.42006 * 179.97438 * 13 12 11 15 15 N 1.31493 * 121.15386 * 359.97438 * 14 13 12 16 16 C 1.33657 * 121.79455 * 359.97438 * 15 14 13 17 17 C 1.41426 * 119.77706 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00398 * 187.07639 * 17 16 15 19 19 C 1.40028 * 120.00304 * 7.07138 * 17 16 15 20 20 N 1.30742 * 120.00582 * 182.55912 * 19 17 16 21 21 Si 1.86808 * 119.99789 * 2.56433 * 19 17 16 22 22 H 1.48499 * 109.47070 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.46833 * 299.99945 * 21 19 17 24 24 H 1.48501 * 109.46996 * 59.99803 * 21 19 17 25 25 C 1.39344 * 120.82572 * 180.23117 * 12 11 10 26 26 C 1.39403 * 119.87018 * 0.27444 * 11 10 9 27 27 C 1.37889 * 119.93216 * 359.42540 * 26 11 10 28 28 H 1.09004 * 109.46798 * 296.05168 * 1 2 3 29 29 H 1.08997 * 109.46613 * 56.04634 * 1 2 3 30 30 H 1.08997 * 109.47085 * 176.04862 * 1 2 3 31 31 H 1.09008 * 109.47040 * 183.95277 * 3 2 1 32 32 H 1.09000 * 109.47058 * 303.95093 * 3 2 1 33 33 H 1.08998 * 109.47669 * 63.95666 * 3 2 1 34 34 H 1.08996 * 109.47100 * 49.99914 * 4 2 1 35 35 H 1.09002 * 109.47061 * 289.99927 * 4 2 1 36 36 H 1.09001 * 109.47351 * 59.99488 * 5 4 2 37 37 H 1.09002 * 109.47067 * 299.99761 * 5 4 2 38 38 H 1.08996 * 109.46940 * 59.99668 * 6 5 4 39 39 H 1.09002 * 109.46925 * 299.99862 * 6 5 4 40 40 H 1.08006 * 119.96801 * 359.97438 * 9 8 7 41 41 H 1.07997 * 120.03006 * 180.02562 * 10 9 8 42 42 H 1.07999 * 120.29380 * 359.95359 * 13 12 11 43 43 H 1.08010 * 119.42561 * 179.97438 * 14 13 12 44 44 H 0.96999 * 119.99756 * 354.85168 * 20 19 17 45 45 H 1.07995 * 120.58693 * 0.04132 * 25 12 11 46 46 H 1.07999 * 120.02989 * 179.72939 * 26 11 10 47 47 H 1.08001 * 119.96255 * 180.30195 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9553 0.9704 6 6 4.0528 -1.7526 2.1556 7 8 5.4621 -1.9300 1.9992 8 6 6.1086 -2.6219 2.9732 9 6 7.4783 -2.8306 2.8823 10 6 8.1372 -3.5321 3.8697 11 6 7.4268 -4.0324 4.9598 12 6 8.1325 -4.7879 6.0233 13 6 9.5137 -5.0088 5.9506 14 6 10.1433 -5.7175 6.9601 15 7 9.4671 -6.1863 7.9858 16 6 8.1485 -6.0023 8.1035 17 6 7.4636 -6.5257 9.2247 18 1 6.3854 -6.4800 9.2686 19 6 8.1832 -7.1033 10.2779 20 7 7.5482 -7.6320 11.2911 21 14 10.0508 -7.1183 10.2353 22 1 10.5684 -7.7821 11.4587 23 1 10.5125 -7.8613 9.0354 24 1 10.5559 -5.7230 10.1784 25 6 7.4372 -5.2991 7.1174 26 6 6.0506 -3.8266 5.0451 27 6 5.3982 -3.1190 4.0577 28 1 -0.3633 0.4514 0.9233 29 1 -0.3632 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0829 1.3431 -0.0708 32 1 1.5899 1.9162 -0.8525 33 1 1.7045 1.8723 0.9233 34 1 1.5089 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0629 36 1 3.9909 0.0193 0.9323 37 1 3.7024 -1.4966 0.0452 38 1 3.5664 -2.7272 2.1941 39 1 3.8549 -1.2109 3.0806 40 1 8.0281 -2.4431 2.0373 41 1 9.2027 -3.6937 3.7986 42 1 10.0828 -4.6300 5.1145 43 1 11.2083 -5.8883 6.9039 44 1 6.5829 -7.5584 11.3502 45 1 6.3710 -5.1533 7.2078 46 1 5.4970 -4.2169 5.8863 47 1 4.3328 -2.9552 4.1259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245339227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:19 Heat of formation + Delta-G solvation = 1.657340 kcal Electronic energy + Delta-G solvation = -25593.664144 eV Core-core repulsion = 21933.620291 eV Total energy + Delta-G solvation = -3660.043852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.19010 -38.86223 -38.17330 -37.20201 -33.89729 -33.13891 -32.03376 -31.16515 -30.29045 -28.44713 -28.07692 -26.80531 -25.60875 -23.66317 -23.32820 -22.09888 -21.37637 -20.96576 -20.27924 -18.36752 -18.18510 -16.68683 -16.42957 -15.96908 -15.59353 -15.55191 -15.30657 -15.05778 -14.79510 -14.10915 -14.02018 -13.80675 -13.52412 -13.32979 -13.07985 -12.96285 -12.85246 -12.61162 -12.38810 -12.25967 -12.23577 -12.14274 -11.91294 -11.72318 -11.51079 -11.36495 -11.04204 -10.90827 -10.59720 -10.34864 -10.07128 -9.61990 -9.32813 -9.14580 -8.90359 -8.88423 -8.02207 -7.71710 -7.48735 -7.26124 -4.82733 1.21090 1.48164 2.51983 2.71277 2.90834 3.57797 3.62048 3.65938 4.01916 4.05306 4.42435 4.44883 4.59526 4.63290 4.66021 4.73343 4.88466 4.89486 4.91342 4.95810 5.03365 5.09270 5.15833 5.17197 5.20354 5.39560 5.43239 5.47212 5.48769 5.50680 5.64492 5.67294 5.71925 5.81278 6.04599 6.18796 6.30720 6.35958 6.44430 6.48857 6.49679 6.51173 6.75059 6.83580 6.95836 7.18269 7.36706 7.40813 7.44752 7.64174 8.03058 8.24668 8.59390 9.44051 9.97668 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.001908 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.828937 B =14675.261000 C =15643.035063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.018 3.982 4 C 0.057 3.943 5 C -0.116 4.116 6 C 0.061 3.939 7 O -0.316 6.316 8 C 0.119 3.881 9 C -0.152 4.152 10 C -0.070 4.070 11 C -0.062 4.062 12 C 0.020 3.980 13 C -0.306 4.306 14 C 0.153 3.847 15 N -0.575 5.575 16 C 0.250 3.750 17 C -0.473 4.473 18 H 0.081 0.919 19 C 0.043 3.957 20 N -0.803 5.803 21 Si 1.156 2.844 22 H -0.333 1.333 23 H -0.279 1.279 24 H -0.293 1.293 25 C -0.246 4.246 26 C -0.070 4.070 27 C -0.208 4.208 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.282 0.718 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 14.213 -19.442 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.130 4.130 4 C -0.071 4.071 5 C -0.154 4.154 6 C -0.015 4.015 7 O -0.230 6.230 8 C 0.074 3.926 9 C -0.171 4.171 10 C -0.088 4.088 11 C -0.062 4.062 12 C 0.014 3.986 13 C -0.329 4.329 14 C -0.008 4.008 15 N -0.294 5.294 16 C 0.128 3.872 17 C -0.504 4.504 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.425 5.425 21 Si 0.991 3.009 22 H -0.267 1.267 23 H -0.207 1.207 24 H -0.222 1.222 25 C -0.268 4.268 26 C -0.088 4.088 27 C -0.226 4.226 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.147 0.853 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.291 13.063 -18.538 24.146 hybrid contribution -2.639 1.415 -0.598 3.054 sum -10.930 14.477 -19.136 26.368 Atomic orbital electron populations 1.22396 0.86932 1.02486 1.00636 1.61930 1.08070 1.14170 1.42940 1.22480 1.01354 0.88549 1.00583 1.22010 0.94721 0.98757 0.91627 1.21498 0.94321 1.01160 0.98376 1.22677 0.79637 1.00144 0.99018 1.85990 1.21806 1.70572 1.44678 1.18999 0.92094 0.93403 0.88135 1.20309 0.91318 1.04180 1.01289 1.21112 1.00101 0.95357 0.92252 1.18932 0.92957 0.99258 0.95076 1.18648 0.93211 0.94418 0.92308 1.21172 0.94097 1.13951 1.03698 1.22039 0.98305 0.91167 0.89287 1.66511 1.09091 1.28069 1.25760 1.18587 0.87720 0.88687 0.92237 1.20785 0.95733 1.32697 1.01205 0.90122 1.27858 1.11006 0.88484 0.90504 1.70659 1.12664 1.30018 1.29133 0.81791 0.69584 0.77328 0.72184 1.26681 1.20656 1.22172 1.21714 0.99236 1.08242 0.97587 1.21138 0.93937 0.95995 0.97763 1.21117 1.00045 1.05118 0.96356 0.95549 0.91180 0.91173 0.90835 0.91283 0.95510 0.90288 0.94386 0.90747 0.89843 0.91937 0.92180 0.85384 0.84862 0.87515 0.85323 0.90641 0.87521 0.85301 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.57 60.07 0.57 0.71 16 2 N -0.55 -3.88 5.02 -251.26 -1.26 -5.14 16 3 C 0.02 0.11 9.32 60.06 0.56 0.67 16 4 C 0.06 0.39 4.96 -3.82 -0.02 0.37 16 5 C -0.12 -0.89 5.51 -26.73 -0.15 -1.04 16 6 C 0.06 0.56 4.74 37.16 0.18 0.73 16 7 O -0.32 -3.91 10.13 -19.27 -0.20 -4.11 16 8 C 0.12 1.64 6.69 -39.13 -0.26 1.38 16 9 C -0.15 -2.11 9.97 -39.48 -0.39 -2.50 16 10 C -0.07 -1.07 9.44 -39.28 -0.37 -1.44 16 11 C -0.06 -1.09 5.88 -104.88 -0.62 -1.71 16 12 C 0.02 0.41 5.91 -104.65 -0.62 -0.21 16 13 C -0.31 -6.16 9.51 -38.81 -0.37 -6.53 16 14 C 0.15 3.32 11.17 -17.61 -0.20 3.12 16 15 N -0.58 -14.56 4.54 -11.21 -0.05 -14.61 16 16 C 0.25 6.51 6.39 -85.02 -0.54 5.96 16 17 C -0.47 -12.84 9.58 -37.70 -0.36 -13.21 16 18 H 0.08 2.17 8.05 -52.48 -0.42 1.75 16 19 C 0.04 1.16 5.52 -17.34 -0.10 1.07 16 20 N -0.80 -21.89 13.65 55.55 0.76 -21.14 16 21 Si 1.16 28.52 25.56 -169.99 -4.34 24.17 16 22 H -0.33 -8.11 7.11 56.52 0.40 -7.71 16 23 H -0.28 -6.84 6.67 56.52 0.38 -6.46 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C -0.25 -5.69 9.22 -38.33 -0.35 -6.05 16 26 C -0.07 -1.13 9.44 -39.28 -0.37 -1.50 16 27 C -0.21 -2.86 9.02 -39.48 -0.36 -3.22 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 31 H 0.07 0.45 6.47 -51.92 -0.34 0.11 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 36 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 39 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 40 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.13 1.82 6.28 -52.49 -0.33 1.49 16 42 H 0.11 1.80 6.32 -52.49 -0.33 1.47 16 43 H 0.13 2.36 8.06 -52.48 -0.42 1.93 16 44 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 45 H 0.11 2.30 6.33 -52.49 -0.33 1.97 16 46 H 0.13 2.02 6.28 -52.49 -0.33 1.69 16 47 H 0.12 1.39 6.28 -52.49 -0.33 1.06 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -29.97 379.29 -10.08 -40.05 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.94 Total: -1.56 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -3.76 Total: -23.38 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.55 Total: -40.89 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.11 kcal Atomic # 14 Polarization: 28.52 SS G_CDS: -4.34 Total: 24.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.97 -10.08 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245339227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.708 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds