Wall clock time and date at job start Tue Mar 31 2020 14:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46891 * 111.00031 * 2 1 4 4 C 1.46905 * 110.99724 * 123.95318 * 2 1 3 5 5 C 1.52998 * 109.46907 * 170.00162 * 4 2 1 6 6 C 1.53000 * 109.47203 * 179.97438 * 5 4 2 7 7 O 1.42895 * 109.47415 * 179.97438 * 6 5 4 8 8 C 1.35851 * 117.00422 * 179.97438 * 7 6 5 9 9 C 1.38851 * 119.93602 * 179.97438 * 8 7 6 10 10 C 1.37885 * 120.06439 * 179.97438 * 9 8 7 11 11 C 1.39403 * 119.93293 * 0.02562 * 10 9 8 12 12 C 1.48325 * 120.06524 * 179.97438 * 11 10 9 13 13 C 1.40067 * 120.82115 * 0.02562 * 12 11 10 14 14 C 1.38476 * 119.42006 * 179.97438 * 13 12 11 15 15 N 1.31493 * 121.15386 * 359.97438 * 14 13 12 16 16 C 1.33657 * 121.79455 * 359.97438 * 15 14 13 17 17 C 1.41426 * 119.77706 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00398 * 187.07639 * 17 16 15 19 19 C 1.40028 * 120.00304 * 7.07138 * 17 16 15 20 20 N 1.30742 * 120.00582 * 182.55912 * 19 17 16 21 21 Si 1.86808 * 119.99789 * 2.56433 * 19 17 16 22 22 H 1.48499 * 109.47070 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.46833 * 299.99945 * 21 19 17 24 24 H 1.48501 * 109.46996 * 59.99803 * 21 19 17 25 25 C 1.39344 * 120.82572 * 180.23117 * 12 11 10 26 26 C 1.39403 * 119.87018 * 0.27444 * 11 10 9 27 27 C 1.37889 * 119.93216 * 359.42540 * 26 11 10 28 28 H 1.09004 * 109.46798 * 296.05168 * 1 2 3 29 29 H 1.08997 * 109.46613 * 56.04634 * 1 2 3 30 30 H 1.08997 * 109.47085 * 176.04862 * 1 2 3 31 31 H 1.09008 * 109.47040 * 183.95277 * 3 2 1 32 32 H 1.09000 * 109.47058 * 303.95093 * 3 2 1 33 33 H 1.08998 * 109.47669 * 63.95666 * 3 2 1 34 34 H 1.08996 * 109.47100 * 49.99914 * 4 2 1 35 35 H 1.09002 * 109.47061 * 289.99927 * 4 2 1 36 36 H 1.09001 * 109.47351 * 59.99488 * 5 4 2 37 37 H 1.09002 * 109.47067 * 299.99761 * 5 4 2 38 38 H 1.08996 * 109.46940 * 59.99668 * 6 5 4 39 39 H 1.09002 * 109.46925 * 299.99862 * 6 5 4 40 40 H 1.08006 * 119.96801 * 359.97438 * 9 8 7 41 41 H 1.07997 * 120.03006 * 180.02562 * 10 9 8 42 42 H 1.07999 * 120.29380 * 359.95359 * 13 12 11 43 43 H 1.08010 * 119.42561 * 179.97438 * 14 13 12 44 44 H 0.96999 * 119.99756 * 354.85168 * 20 19 17 45 45 H 1.07995 * 120.58693 * 0.04132 * 25 12 11 46 46 H 1.07999 * 120.02989 * 179.72939 * 26 11 10 47 47 H 1.08001 * 119.96255 * 180.30195 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5044 -0.9553 0.9704 6 6 4.0528 -1.7526 2.1556 7 8 5.4621 -1.9300 1.9992 8 6 6.1086 -2.6219 2.9732 9 6 7.4783 -2.8306 2.8823 10 6 8.1372 -3.5321 3.8697 11 6 7.4268 -4.0324 4.9598 12 6 8.1325 -4.7879 6.0233 13 6 9.5137 -5.0088 5.9506 14 6 10.1433 -5.7175 6.9601 15 7 9.4671 -6.1863 7.9858 16 6 8.1485 -6.0023 8.1035 17 6 7.4636 -6.5257 9.2247 18 1 6.3854 -6.4800 9.2686 19 6 8.1832 -7.1033 10.2779 20 7 7.5482 -7.6320 11.2911 21 14 10.0508 -7.1183 10.2353 22 1 10.5684 -7.7821 11.4587 23 1 10.5125 -7.8613 9.0354 24 1 10.5559 -5.7230 10.1784 25 6 7.4372 -5.2991 7.1174 26 6 6.0506 -3.8266 5.0451 27 6 5.3982 -3.1190 4.0577 28 1 -0.3633 0.4514 0.9233 29 1 -0.3632 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0829 1.3431 -0.0708 32 1 1.5899 1.9162 -0.8525 33 1 1.7045 1.8723 0.9233 34 1 1.5089 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0629 36 1 3.9909 0.0193 0.9323 37 1 3.7024 -1.4966 0.0452 38 1 3.5664 -2.7272 2.1941 39 1 3.8549 -1.2109 3.0806 40 1 8.0281 -2.4431 2.0373 41 1 9.2027 -3.6937 3.7986 42 1 10.0828 -4.6300 5.1145 43 1 11.2083 -5.8883 6.9039 44 1 6.5829 -7.5584 11.3502 45 1 6.3710 -5.1533 7.2078 46 1 5.4970 -4.2169 5.8863 47 1 4.3328 -2.9552 4.1259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245339227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:18 Heat of formation + Delta-G solvation = -14.800827 kcal Electronic energy + Delta-G solvation = -25594.377823 eV Core-core repulsion = 21933.620291 eV Total energy + Delta-G solvation = -3660.757532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30158 -40.43149 -38.90895 -38.24246 -35.78947 -34.17487 -33.25470 -32.56612 -31.85213 -29.73449 -28.52064 -27.66646 -27.30566 -24.78714 -24.51884 -23.25345 -22.62652 -21.91212 -21.64745 -20.16411 -19.27796 -17.75350 -17.39616 -17.23422 -16.73068 -16.69922 -16.19976 -16.01452 -15.85801 -15.62394 -15.19951 -14.85963 -14.72704 -14.68712 -14.57427 -14.42452 -14.09326 -13.85544 -13.59566 -13.34251 -13.01747 -12.87742 -12.82790 -12.63066 -12.56624 -12.38909 -12.32259 -12.15277 -11.93603 -11.66101 -11.56517 -11.50563 -11.30273 -10.64188 -10.03229 -9.88227 -9.64335 -9.37389 -9.23417 -8.81053 -6.82629 -0.13791 0.35407 0.69734 1.15239 1.62609 1.74842 2.06813 2.08318 2.49658 2.60777 2.90055 3.03922 3.62288 3.72421 3.76418 3.83267 3.87051 3.98039 4.05403 4.06272 4.22242 4.30849 4.31862 4.35920 4.39146 4.46196 4.52544 4.60269 4.61893 4.66261 4.70268 4.73452 4.80915 4.96531 4.98287 5.00076 5.07271 5.09052 5.16336 5.26067 5.30066 5.36978 5.41160 5.44995 5.67898 5.76909 5.94715 6.00948 6.03327 6.03456 6.37067 6.40233 6.65858 7.59160 7.96312 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.001908 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.828937 B =14675.261000 C =15643.035063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.562 5.562 3 C 0.018 3.982 4 C 0.059 3.941 5 C -0.106 4.106 6 C 0.055 3.945 7 O -0.321 6.321 8 C 0.127 3.873 9 C -0.154 4.154 10 C -0.062 4.062 11 C -0.098 4.098 12 C 0.027 3.973 13 C -0.283 4.283 14 C 0.133 3.867 15 N -0.598 5.598 16 C 0.237 3.763 17 C -0.514 4.514 18 H 0.062 0.938 19 C 0.014 3.986 20 N -0.833 5.833 21 Si 1.191 2.809 22 H -0.332 1.332 23 H -0.277 1.277 24 H -0.296 1.296 25 C -0.270 4.270 26 C -0.078 4.078 27 C -0.207 4.207 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.167 0.833 44 H 0.279 0.721 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 16.169 -22.910 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.286 5.286 3 C -0.130 4.130 4 C -0.069 4.069 5 C -0.144 4.144 6 C -0.021 4.021 7 O -0.235 6.235 8 C 0.082 3.918 9 C -0.173 4.173 10 C -0.080 4.080 11 C -0.098 4.098 12 C 0.021 3.979 13 C -0.305 4.305 14 C -0.025 4.025 15 N -0.318 5.318 16 C 0.113 3.887 17 C -0.546 4.546 18 H 0.080 0.920 19 C -0.202 4.202 20 N -0.456 5.456 21 Si 1.024 2.976 22 H -0.266 1.266 23 H -0.205 1.205 24 H -0.224 1.224 25 C -0.291 4.291 26 C -0.096 4.096 27 C -0.226 4.226 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.184 0.816 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.139 0.861 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.576 15.031 -22.031 27.726 hybrid contribution -2.919 1.059 0.042 3.105 sum -10.495 16.090 -21.989 29.199 Atomic orbital electron populations 1.22431 0.86146 1.02879 1.01038 1.61943 1.08927 1.14674 1.43100 1.22500 1.01278 0.88265 1.00968 1.21981 0.94019 0.99115 0.91768 1.21414 0.94887 1.00708 0.97404 1.22924 0.77999 1.01057 1.00080 1.86004 1.23517 1.69879 1.44099 1.19189 0.92440 0.92265 0.87930 1.20593 0.91548 1.03539 1.01587 1.21268 1.00905 0.94507 0.91335 1.18870 0.93681 1.01575 0.95694 1.19040 0.93807 0.93030 0.92018 1.21735 0.93981 1.11047 1.03764 1.22766 1.00085 0.90937 0.88736 1.66434 1.08888 1.28957 1.27496 1.18706 0.88519 0.88956 0.92478 1.20729 0.95066 1.35946 1.02896 0.91989 1.28578 1.13041 0.88209 0.90357 1.70678 1.12488 1.32401 1.30032 0.81316 0.67255 0.76972 0.72026 1.26599 1.20456 1.22406 1.21800 0.99711 1.09228 0.98403 1.21195 0.93744 0.96386 0.98263 1.21306 1.01300 1.04319 0.95667 0.95372 0.90520 0.90868 0.90999 0.90586 0.95419 0.89811 0.94097 0.90821 0.90536 0.91027 0.91255 0.82889 0.83039 0.83240 0.81577 0.91058 0.87325 0.86075 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 127.69 1.22 1.44 16 2 N -0.56 -6.90 5.02 -948.84 -4.76 -11.66 16 3 C 0.02 0.19 9.32 127.69 1.19 1.38 16 4 C 0.06 0.67 4.96 86.30 0.43 1.10 16 5 C -0.11 -1.38 5.51 30.59 0.17 -1.21 16 6 C 0.05 0.83 4.74 71.98 0.34 1.17 16 7 O -0.32 -6.84 10.13 -91.88 -0.93 -7.77 16 8 C 0.13 3.08 6.69 22.56 0.15 3.23 16 9 C -0.15 -3.64 9.97 22.33 0.22 -3.42 16 10 C -0.06 -1.65 9.44 22.47 0.21 -1.44 16 11 C -0.10 -3.23 5.88 -20.03 -0.12 -3.35 16 12 C 0.03 1.09 5.91 -19.88 -0.12 0.97 16 13 C -0.28 -10.44 9.51 22.77 0.22 -10.23 16 14 C 0.13 5.45 11.17 84.80 0.95 6.40 16 15 N -0.60 -30.00 4.54 -189.38 -0.86 -30.86 16 16 C 0.24 12.63 6.39 40.19 0.26 12.89 16 17 C -0.51 -29.45 9.58 23.49 0.23 -29.23 16 18 H 0.06 3.62 8.05 -2.91 -0.02 3.59 16 19 C 0.01 0.79 5.52 85.29 0.47 1.26 16 20 N -0.83 -47.64 13.65 21.84 0.30 -47.34 16 21 Si 1.19 59.10 25.56 68.60 1.75 60.85 16 22 H -0.33 -16.12 7.11 99.48 0.71 -15.41 16 23 H -0.28 -13.43 6.67 99.48 0.66 -12.77 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 25 C -0.27 -12.67 9.22 23.08 0.21 -12.46 16 26 C -0.08 -2.38 9.44 22.47 0.21 -2.17 16 27 C -0.21 -5.16 9.02 22.33 0.20 -4.96 16 28 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 30 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.07 0.75 6.47 -2.38 -0.02 0.73 16 32 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 33 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.08 0.86 8.06 -2.39 -0.02 0.85 16 35 H 0.04 0.44 8.12 -2.39 -0.02 0.43 16 36 H 0.07 0.97 6.55 -2.39 -0.02 0.96 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 39 H 0.07 0.96 7.65 -2.39 -0.02 0.94 16 40 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.15 3.36 6.28 -2.91 -0.02 3.34 16 42 H 0.15 4.21 6.32 -2.91 -0.02 4.19 16 43 H 0.17 5.43 8.06 -2.91 -0.02 5.41 16 44 H 0.28 15.46 8.72 -92.71 -0.81 14.65 16 45 H 0.11 4.89 6.33 -2.91 -0.02 4.88 16 46 H 0.12 3.82 6.28 -2.91 -0.02 3.80 16 47 H 0.15 2.88 6.28 -2.91 -0.02 2.86 16 Total: -1.00 -66.40 379.29 2.83 -63.58 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.88 Total: 11.82 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 6.44 Total: -38.62 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -5.32 Total: -89.87 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.93 Total: -7.77 kcal Atomic # 14 Polarization: 59.10 SS G_CDS: 1.75 Total: 60.85 kcal Total: -66.40 2.83 -63.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245339227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.776 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds