Wall clock time and date at job start Tue Mar 31 2020 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99905 * 2 1 4 4 C 1.46904 * 110.99823 * 123.95020 * 2 1 3 5 5 C 1.52998 * 109.46829 * 66.04767 * 4 2 1 6 6 C 1.53006 * 109.46976 * 179.97438 * 5 4 2 7 7 O 1.42899 * 109.47114 * 180.02562 * 6 5 4 8 8 C 1.35784 * 116.99939 * 180.02562 * 7 6 5 9 9 C 1.39000 * 119.90525 * 179.97438 * 8 7 6 10 10 C 1.37731 * 120.09630 * 180.02562 * 9 8 7 11 11 C 1.39793 * 119.90241 * 359.97438 * 10 9 8 12 12 C 1.47704 * 120.09240 * 180.02562 * 11 10 9 13 13 C 1.39750 * 120.65419 * 309.97684 * 12 11 10 14 14 C 1.38339 * 118.47101 * 180.02562 * 13 12 11 15 15 C 1.39085 * 119.73839 * 0.02562 * 14 13 12 16 16 N 1.31265 * 121.35506 * 359.97222 * 15 14 13 17 17 C 1.33718 * 121.63792 * 0.02562 * 16 15 14 18 18 C 1.40753 * 119.94567 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99821 * 171.49739 * 18 17 16 20 20 C 1.40126 * 120.00048 * 351.49661 * 18 17 16 21 21 N 1.30706 * 119.99603 * 6.05500 * 20 18 17 22 22 Si 1.86799 * 119.99804 * 186.05601 * 20 18 17 23 23 H 1.48498 * 109.47056 * 94.98232 * 22 20 18 24 24 H 1.48504 * 109.46742 * 214.97958 * 22 20 18 25 25 H 1.48502 * 109.47217 * 334.97950 * 22 20 18 26 26 C 1.39797 * 119.81313 * 0.27427 * 11 10 9 27 27 C 1.37727 * 119.89974 * 359.49211 * 26 11 10 28 28 H 1.09007 * 109.47405 * 296.04749 * 1 2 3 29 29 H 1.09006 * 109.47184 * 56.04843 * 1 2 3 30 30 H 1.08999 * 109.47232 * 176.04455 * 1 2 3 31 31 H 1.09004 * 109.47001 * 183.95171 * 3 2 1 32 32 H 1.09000 * 109.47221 * 303.95504 * 3 2 1 33 33 H 1.09002 * 109.47350 * 63.94924 * 3 2 1 34 34 H 1.09001 * 109.47313 * 306.04864 * 4 2 1 35 35 H 1.09004 * 109.46789 * 186.04508 * 4 2 1 36 36 H 1.09001 * 109.47093 * 59.99963 * 5 4 2 37 37 H 1.09002 * 109.47632 * 299.99813 * 5 4 2 38 38 H 1.08997 * 109.46971 * 59.99628 * 6 5 4 39 39 H 1.09004 * 109.46815 * 299.99847 * 6 5 4 40 40 H 1.08002 * 119.95217 * 359.97438 * 9 8 7 41 41 H 1.08000 * 120.04537 * 179.97438 * 10 9 8 42 42 H 1.08002 * 120.76750 * 0.02562 * 13 12 11 43 43 H 1.07998 * 120.12816 * 180.02562 * 14 13 12 44 44 H 1.07999 * 119.32197 * 180.25355 * 15 14 13 45 45 H 0.97006 * 119.99375 * 179.97438 * 21 20 18 46 46 H 1.08003 * 120.04940 * 179.71829 * 26 11 10 47 47 H 1.08002 * 119.95112 * 180.20816 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9704 6 6 2.1802 -3.0404 2.1550 7 8 1.8408 -4.4197 1.9986 8 6 2.2558 -5.2709 2.9717 9 6 1.9582 -6.6256 2.8805 10 6 2.3768 -7.4924 3.8656 11 6 3.1023 -7.0081 4.9580 12 6 3.5537 -7.9340 6.0165 13 6 2.6590 -8.8289 6.6095 14 6 3.1301 -9.6755 7.5970 15 6 4.4676 -9.6184 7.9743 16 7 5.3006 -8.7744 7.4115 17 6 4.9039 -7.9318 6.4520 18 6 5.8274 -7.0411 5.8732 19 1 5.5465 -6.4586 5.0083 20 6 7.1113 -6.9103 6.4191 21 7 7.4920 -7.6984 7.3900 22 14 8.2787 -5.6098 5.7595 23 1 8.1828 -4.3877 6.5976 24 1 9.6698 -6.1282 5.7975 25 1 7.9115 -5.2796 4.3589 26 6 3.3948 -5.6440 5.0483 27 6 2.9766 -4.7850 4.0563 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5610 -0.3872 2.0629 35 1 3.0797 -0.6610 1.1757 36 1 2.0658 -2.6213 0.0452 37 1 0.5471 -2.3475 0.9324 38 1 1.7463 -2.6617 3.0804 39 1 3.2645 -2.9355 2.1926 40 1 1.3973 -6.9989 2.0365 41 1 2.1448 -8.5448 3.7942 42 1 1.6235 -8.8589 6.3040 43 1 2.4620 -10.3779 8.0729 44 1 4.8291 -10.2853 8.7430 45 1 8.3809 -7.6080 7.7677 46 1 3.9512 -5.2650 5.8929 47 1 3.2051 -3.7316 4.1236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245341085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:16 Heat of formation + Delta-G solvation = 18.359037 kcal Electronic energy + Delta-G solvation = -26306.888060 eV Core-core repulsion = 22647.568448 eV Total energy + Delta-G solvation = -3659.319612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.75834 -38.45732 -37.94726 -36.66814 -33.73279 -32.87408 -31.41733 -30.67447 -30.10105 -28.00738 -27.93223 -26.55733 -25.66871 -23.46026 -22.39726 -21.99779 -21.24515 -20.77946 -20.05272 -17.86729 -17.46730 -16.45049 -16.08762 -15.83246 -15.39202 -15.26977 -15.08957 -14.93479 -14.41687 -14.16678 -13.81872 -13.73934 -13.12155 -12.96615 -12.84039 -12.75777 -12.42525 -12.28755 -12.19625 -12.09515 -11.94885 -11.74203 -11.51753 -11.37120 -11.28410 -11.18549 -11.07955 -10.83066 -10.51560 -10.40182 -10.24020 -9.84367 -9.43200 -8.75881 -8.43913 -8.37356 -7.88791 -7.63673 -7.09531 -6.50173 -4.56428 1.86023 1.97246 2.71616 2.99888 3.03808 3.07996 3.16918 3.20000 3.77199 3.87901 4.41934 4.60888 4.67316 4.74812 4.82260 4.95291 5.01672 5.10085 5.19469 5.22432 5.29692 5.34421 5.40627 5.46837 5.49838 5.56828 5.71959 5.81364 5.83686 5.89445 6.01608 6.05653 6.07125 6.18914 6.33082 6.48496 6.61811 6.62546 6.62947 6.81148 6.84913 6.92657 7.07016 7.25814 7.29049 7.35001 7.58571 7.72308 7.86304 7.99494 8.19069 8.56918 8.86237 10.02416 10.21145 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.002720 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.403727 B =10291.029247 C =12015.494445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.057 3.943 5 C -0.115 4.115 6 C 0.063 3.937 7 O -0.320 6.320 8 C 0.098 3.902 9 C -0.151 4.151 10 C -0.093 4.093 11 C -0.008 4.008 12 C -0.231 4.231 13 C -0.036 4.036 14 C -0.320 4.320 15 C 0.130 3.870 16 N -0.483 5.483 17 C 0.268 3.732 18 C -0.421 4.421 19 H 0.092 0.908 20 C 0.069 3.931 21 N -0.710 5.710 22 Si 0.902 3.098 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.068 4.068 27 C -0.207 4.207 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.274 0.726 46 H 0.130 0.870 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 12.955 -9.910 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.153 4.153 6 C -0.013 4.013 7 O -0.235 6.235 8 C 0.054 3.946 9 C -0.170 4.170 10 C -0.111 4.111 11 C -0.009 4.009 12 C -0.236 4.236 13 C -0.060 4.060 14 C -0.343 4.343 15 C -0.038 4.038 16 N -0.194 5.194 17 C 0.145 3.855 18 C -0.451 4.451 19 H 0.110 0.890 20 C -0.158 4.158 21 N -0.330 5.330 22 Si 0.726 3.274 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.086 4.086 27 C -0.226 4.226 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.136 0.864 45 H 0.085 0.915 46 H 0.148 0.852 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.709 12.706 -10.143 17.993 hybrid contribution -0.519 0.995 0.499 1.228 sum -8.228 13.700 -9.644 18.666 Atomic orbital electron populations 1.22476 0.87258 1.02720 1.00468 1.61931 1.08220 1.13879 1.43101 1.22392 1.00936 0.88567 1.00536 1.22019 1.00607 0.93010 0.91473 1.21490 1.02149 0.93068 0.98585 1.22599 0.99949 0.80192 0.98582 1.85931 1.74759 1.17619 1.45191 1.18934 0.97132 0.89937 0.88639 1.20167 1.05566 0.90185 1.01057 1.21090 0.98203 0.98826 0.93029 1.18659 0.95826 0.92518 0.93868 1.19345 0.95643 1.03926 1.04700 1.20901 0.96938 0.93541 0.94624 1.21225 0.97841 1.07915 1.07336 1.22603 0.89830 0.95186 0.96167 1.68761 1.34209 1.05781 1.10650 1.18547 0.88657 0.90065 0.88262 1.19730 0.95439 1.18411 1.11542 0.88990 1.26137 0.98891 0.96302 0.94438 1.70124 1.17625 1.28931 1.16338 0.86374 0.79441 0.80957 0.80622 1.19309 1.19931 1.18225 1.21223 0.96999 0.92572 0.97841 1.21079 1.04990 0.99984 0.96540 0.95563 0.91380 0.90813 0.91187 0.91266 0.95601 0.94420 0.90280 0.89960 0.90901 0.92453 0.92105 0.86228 0.86079 0.88542 0.88724 0.86423 0.91452 0.85215 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.06 0.56 0.70 16 2 N -0.55 -4.67 5.02 -251.25 -1.26 -5.93 16 3 C 0.02 0.16 9.57 60.06 0.57 0.74 16 4 C 0.06 0.49 4.96 -3.82 -0.02 0.47 16 5 C -0.12 -1.12 5.51 -26.73 -0.15 -1.27 16 6 C 0.06 0.74 4.74 37.16 0.18 0.91 16 7 O -0.32 -4.88 10.13 -19.07 -0.19 -5.07 16 8 C 0.10 1.67 6.70 -39.02 -0.26 1.41 16 9 C -0.15 -2.59 9.97 -39.48 -0.39 -2.99 16 10 C -0.09 -1.75 9.54 -39.19 -0.37 -2.12 16 11 C -0.01 -0.16 4.97 -104.87 -0.52 -0.69 16 12 C -0.23 -5.51 5.53 -104.08 -0.58 -6.08 16 13 C -0.04 -0.79 9.66 -38.98 -0.38 -1.17 16 14 C -0.32 -7.06 10.10 -39.23 -0.40 -7.45 16 15 C 0.13 3.11 11.17 -17.48 -0.20 2.91 16 16 N -0.48 -13.06 7.90 -10.90 -0.09 -13.14 16 17 C 0.27 7.12 6.54 -84.71 -0.55 6.57 16 18 C -0.42 -10.88 7.75 -37.92 -0.29 -11.18 16 19 H 0.09 2.28 5.63 -52.49 -0.30 1.99 16 20 C 0.07 1.70 5.49 -17.32 -0.10 1.61 16 21 N -0.71 -18.45 11.50 55.56 0.64 -17.81 16 22 Si 0.90 18.24 29.56 -169.99 -5.03 13.22 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 C -0.07 -1.36 7.64 -39.19 -0.30 -1.66 16 27 C -0.21 -3.58 9.02 -39.49 -0.36 -3.94 16 28 H 0.03 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.54 6.47 -51.93 -0.34 0.21 16 31 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.70 6.55 -51.93 -0.34 0.36 16 38 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 39 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.12 2.11 8.05 -52.49 -0.42 1.69 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 45 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 46 H 0.13 2.66 7.32 -52.48 -0.38 2.28 16 47 H 0.12 1.73 6.28 -52.49 -0.33 1.40 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -29.19 384.71 -10.78 -39.97 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.10 Total: 6.19 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -3.55 Total: -23.22 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.71 Total: -36.88 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.19 Total: -5.07 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.19 -10.78 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245341085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.330 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds