Wall clock time and date at job start Tue Mar 31 2020 14:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99905 * 2 1 4 4 C 1.46904 * 110.99823 * 123.95020 * 2 1 3 5 5 C 1.52998 * 109.46829 * 66.04767 * 4 2 1 6 6 C 1.53006 * 109.46976 * 179.97438 * 5 4 2 7 7 O 1.42899 * 109.47114 * 180.02562 * 6 5 4 8 8 C 1.35784 * 116.99939 * 180.02562 * 7 6 5 9 9 C 1.39000 * 119.90525 * 179.97438 * 8 7 6 10 10 C 1.37731 * 120.09630 * 180.02562 * 9 8 7 11 11 C 1.39793 * 119.90241 * 359.97438 * 10 9 8 12 12 C 1.47704 * 120.09240 * 180.02562 * 11 10 9 13 13 C 1.39750 * 120.65419 * 309.97684 * 12 11 10 14 14 C 1.38339 * 118.47101 * 180.02562 * 13 12 11 15 15 C 1.39085 * 119.73839 * 0.02562 * 14 13 12 16 16 N 1.31265 * 121.35506 * 359.97222 * 15 14 13 17 17 C 1.33718 * 121.63792 * 0.02562 * 16 15 14 18 18 C 1.40753 * 119.94567 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99821 * 171.49739 * 18 17 16 20 20 C 1.40126 * 120.00048 * 351.49661 * 18 17 16 21 21 N 1.30706 * 119.99603 * 6.05500 * 20 18 17 22 22 Si 1.86799 * 119.99804 * 186.05601 * 20 18 17 23 23 H 1.48498 * 109.47056 * 94.98232 * 22 20 18 24 24 H 1.48504 * 109.46742 * 214.97958 * 22 20 18 25 25 H 1.48502 * 109.47217 * 334.97950 * 22 20 18 26 26 C 1.39797 * 119.81313 * 0.27427 * 11 10 9 27 27 C 1.37727 * 119.89974 * 359.49211 * 26 11 10 28 28 H 1.09007 * 109.47405 * 296.04749 * 1 2 3 29 29 H 1.09006 * 109.47184 * 56.04843 * 1 2 3 30 30 H 1.08999 * 109.47232 * 176.04455 * 1 2 3 31 31 H 1.09004 * 109.47001 * 183.95171 * 3 2 1 32 32 H 1.09000 * 109.47221 * 303.95504 * 3 2 1 33 33 H 1.09002 * 109.47350 * 63.94924 * 3 2 1 34 34 H 1.09001 * 109.47313 * 306.04864 * 4 2 1 35 35 H 1.09004 * 109.46789 * 186.04508 * 4 2 1 36 36 H 1.09001 * 109.47093 * 59.99963 * 5 4 2 37 37 H 1.09002 * 109.47632 * 299.99813 * 5 4 2 38 38 H 1.08997 * 109.46971 * 59.99628 * 6 5 4 39 39 H 1.09004 * 109.46815 * 299.99847 * 6 5 4 40 40 H 1.08002 * 119.95217 * 359.97438 * 9 8 7 41 41 H 1.08000 * 120.04537 * 179.97438 * 10 9 8 42 42 H 1.08002 * 120.76750 * 0.02562 * 13 12 11 43 43 H 1.07998 * 120.12816 * 180.02562 * 14 13 12 44 44 H 1.07999 * 119.32197 * 180.25355 * 15 14 13 45 45 H 0.97006 * 119.99375 * 179.97438 * 21 20 18 46 46 H 1.08003 * 120.04940 * 179.71829 * 26 11 10 47 47 H 1.08002 * 119.95112 * 180.20816 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9704 6 6 2.1802 -3.0404 2.1550 7 8 1.8408 -4.4197 1.9986 8 6 2.2558 -5.2709 2.9717 9 6 1.9582 -6.6256 2.8805 10 6 2.3768 -7.4924 3.8656 11 6 3.1023 -7.0081 4.9580 12 6 3.5537 -7.9340 6.0165 13 6 2.6590 -8.8289 6.6095 14 6 3.1301 -9.6755 7.5970 15 6 4.4676 -9.6184 7.9743 16 7 5.3006 -8.7744 7.4115 17 6 4.9039 -7.9318 6.4520 18 6 5.8274 -7.0411 5.8732 19 1 5.5465 -6.4586 5.0083 20 6 7.1113 -6.9103 6.4191 21 7 7.4920 -7.6984 7.3900 22 14 8.2787 -5.6098 5.7595 23 1 8.1828 -4.3877 6.5976 24 1 9.6698 -6.1282 5.7975 25 1 7.9115 -5.2796 4.3589 26 6 3.3948 -5.6440 5.0483 27 6 2.9766 -4.7850 4.0563 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5610 -0.3872 2.0629 35 1 3.0797 -0.6610 1.1757 36 1 2.0658 -2.6213 0.0452 37 1 0.5471 -2.3475 0.9324 38 1 1.7463 -2.6617 3.0804 39 1 3.2645 -2.9355 2.1926 40 1 1.3973 -6.9989 2.0365 41 1 2.1448 -8.5448 3.7942 42 1 1.6235 -8.8589 6.3040 43 1 2.4620 -10.3779 8.0729 44 1 4.8291 -10.2853 8.7430 45 1 8.3809 -7.6080 7.7677 46 1 3.9512 -5.2650 5.8929 47 1 3.2051 -3.7316 4.1236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245341085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:15 Heat of formation + Delta-G solvation = 3.037463 kcal Electronic energy + Delta-G solvation = -26307.552454 eV Core-core repulsion = 22647.568448 eV Total energy + Delta-G solvation = -3659.984006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08455 -40.06085 -38.76278 -37.99201 -35.55713 -33.87317 -32.91934 -32.28731 -31.70624 -29.47931 -28.50001 -27.63709 -27.29253 -24.51049 -23.93836 -23.43373 -22.59113 -21.72856 -21.56776 -19.43314 -18.98787 -17.56885 -17.32483 -17.15699 -16.73439 -16.19372 -16.15128 -16.07927 -15.83782 -15.67044 -15.17742 -14.62349 -14.60874 -14.37095 -14.27548 -13.98211 -13.85075 -13.36022 -13.32607 -13.18945 -12.91456 -12.90529 -12.79836 -12.67343 -12.59138 -12.40067 -12.31364 -12.14235 -12.00832 -11.64150 -11.58629 -11.40264 -11.20881 -10.15413 -9.84941 -9.63665 -9.48845 -9.35204 -8.67707 -8.30989 -6.44951 0.33619 0.53950 0.97692 1.26712 1.37723 1.51044 1.51992 2.18629 2.20056 2.82916 2.96285 3.07425 3.87037 3.89824 3.97226 4.02283 4.09058 4.15046 4.17157 4.27921 4.35760 4.38090 4.39558 4.48318 4.49320 4.56717 4.62542 4.64427 4.72593 4.73747 4.80487 4.87010 4.99462 5.00476 5.01377 5.09996 5.17800 5.20169 5.22640 5.34666 5.45715 5.62342 5.65102 5.79318 5.96091 6.02537 6.03367 6.06165 6.19664 6.32114 6.56085 6.72985 6.99492 8.18253 8.42044 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.002720 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.403727 B =10291.029247 C =12015.494445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.105 4.105 6 C 0.056 3.944 7 O -0.325 6.325 8 C 0.107 3.893 9 C -0.151 4.151 10 C -0.091 4.091 11 C -0.040 4.040 12 C -0.235 4.235 13 C -0.046 4.046 14 C -0.311 4.311 15 C 0.105 3.895 16 N -0.521 5.521 17 C 0.235 3.765 18 C -0.449 4.449 19 H 0.093 0.907 20 C 0.026 3.974 21 N -0.752 5.752 22 Si 0.975 3.025 23 H -0.260 1.260 24 H -0.268 1.268 25 H -0.256 1.256 26 C -0.079 4.079 27 C -0.205 4.205 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.137 0.863 45 H 0.279 0.721 46 H 0.113 0.887 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 14.525 -11.515 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.143 4.143 6 C -0.020 4.020 7 O -0.239 6.239 8 C 0.062 3.938 9 C -0.170 4.170 10 C -0.110 4.110 11 C -0.041 4.041 12 C -0.239 4.239 13 C -0.070 4.070 14 C -0.334 4.334 15 C -0.061 4.061 16 N -0.233 5.233 17 C 0.111 3.889 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.197 4.197 21 N -0.374 5.374 22 Si 0.795 3.205 23 H -0.184 1.184 24 H -0.192 1.192 25 H -0.179 1.179 26 C -0.097 4.097 27 C -0.223 4.223 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.154 0.846 45 H 0.090 0.910 46 H 0.131 0.869 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.966 14.267 -11.741 20.538 hybrid contribution -0.325 0.524 0.923 1.110 sum -9.291 14.791 -10.818 20.546 Atomic orbital electron populations 1.22501 0.86712 1.02754 1.01010 1.61938 1.08894 1.14789 1.43092 1.22430 1.01112 0.87839 1.01084 1.21971 1.00885 0.92133 0.91815 1.21405 1.02044 0.93531 0.97285 1.22876 1.00577 0.78506 1.00019 1.85945 1.74432 1.19098 1.44423 1.19049 0.95906 0.90378 0.88491 1.20424 1.05170 0.90204 1.01186 1.21171 0.97524 0.99663 0.92600 1.18679 0.98081 0.92718 0.94594 1.19678 0.94975 1.04288 1.04971 1.21278 0.98138 0.93181 0.94431 1.21576 0.97500 1.07722 1.06566 1.23028 0.90791 0.95363 0.96871 1.68686 1.35916 1.06987 1.11752 1.18997 0.90285 0.90672 0.88949 1.19925 0.96436 1.19301 1.12242 0.88930 1.26994 1.00135 0.98147 0.94395 1.70218 1.18376 1.30888 1.17919 0.85297 0.77134 0.78177 0.79896 1.18431 1.19222 1.17936 1.21134 0.97526 0.92710 0.98319 1.21256 1.04374 1.00912 0.95763 0.95336 0.90490 0.91102 0.90967 0.90423 0.95298 0.93984 0.89952 0.90737 0.90744 0.91381 0.91592 0.83743 0.85110 0.85683 0.85482 0.84602 0.91014 0.86903 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 127.69 1.19 1.42 16 2 N -0.56 -8.45 5.02 -948.81 -4.76 -13.21 16 3 C 0.02 0.27 9.57 127.69 1.22 1.49 16 4 C 0.06 0.89 4.96 86.30 0.43 1.32 16 5 C -0.10 -1.80 5.51 30.60 0.17 -1.64 16 6 C 0.06 1.16 4.74 71.98 0.34 1.50 16 7 O -0.32 -9.01 10.13 -91.13 -0.92 -9.94 16 8 C 0.11 3.40 6.70 22.64 0.15 3.55 16 9 C -0.15 -4.86 9.97 22.33 0.22 -4.63 16 10 C -0.09 -3.31 9.54 22.53 0.21 -3.10 16 11 C -0.04 -1.69 4.97 -20.02 -0.10 -1.79 16 12 C -0.23 -11.34 5.53 -19.51 -0.11 -11.45 16 13 C -0.05 -2.02 9.66 22.66 0.22 -1.80 16 14 C -0.31 -13.46 10.10 22.50 0.23 -13.24 16 15 C 0.11 5.11 11.17 84.98 0.95 6.06 16 16 N -0.52 -29.21 7.90 -188.41 -1.49 -30.70 16 17 C 0.23 12.93 6.54 40.37 0.26 13.19 16 18 C -0.45 -24.01 7.75 23.34 0.18 -23.83 16 19 H 0.09 4.75 5.63 -2.91 -0.02 4.73 16 20 C 0.03 1.30 5.49 85.32 0.47 1.77 16 21 N -0.75 -40.58 11.50 21.86 0.25 -40.32 16 22 Si 0.97 38.08 29.56 68.60 2.03 40.11 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 26 C -0.08 -3.13 7.64 22.53 0.17 -2.96 16 27 C -0.20 -6.75 9.02 22.33 0.20 -6.55 16 28 H 0.03 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 30 H 0.07 0.92 6.47 -2.39 -0.02 0.91 16 31 H 0.07 0.80 8.12 -2.38 -0.02 0.78 16 32 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 33 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 35 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.26 6.55 -2.39 -0.02 1.25 16 38 H 0.07 1.30 7.65 -2.39 -0.02 1.28 16 39 H 0.07 1.33 7.65 -2.39 -0.02 1.31 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.13 4.38 8.05 -2.91 -0.02 4.35 16 42 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 44 H 0.14 5.82 8.06 -2.91 -0.02 5.79 16 45 H 0.28 13.60 8.29 -92.70 -0.77 12.83 16 46 H 0.11 4.80 7.32 -2.91 -0.02 4.77 16 47 H 0.14 3.87 6.28 -2.91 -0.02 3.85 16 Total: -1.00 -64.39 384.71 2.48 -61.91 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.96 Total: 32.83 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 6.41 Total: -40.68 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -6.00 Total: -84.23 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.92 Total: -9.94 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -64.39 2.48 -61.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245341085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.950 kcal (2) G-P(sol) polarization free energy of solvation -64.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds