Wall clock time and date at job start Tue Mar 31 2020 15:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46723 * 2 1 4 4 H 1.09000 * 109.47427 * 54.35823 * 3 2 1 5 5 C 1.50699 * 109.46835 * 174.35790 * 3 2 1 6 6 H 1.07999 * 120.00291 * 119.99963 * 5 3 2 7 7 C 1.37876 * 120.00113 * 299.99617 * 5 3 2 8 8 N 1.31519 * 119.99761 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47293 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47365 * 120.00223 * 9 7 5 12 12 H 1.48503 * 109.47154 * 240.00142 * 9 7 5 13 13 N 1.46896 * 109.47136 * 294.35400 * 3 2 1 14 14 C 1.46898 * 111.00013 * 154.50180 * 13 3 2 15 15 H 1.09001 * 110.62842 * 31.98891 * 14 13 3 16 16 C 1.55141 * 110.85576 * 268.77772 * 14 13 3 17 17 C 1.54902 * 101.65457 * 205.89381 * 16 14 13 18 18 N 1.47848 * 104.79571 * 37.07194 * 17 16 14 19 19 C 1.37849 * 110.99602 * 213.63591 * 18 17 16 20 20 N 1.32643 * 120.91386 * 57.67328 * 19 18 17 21 21 C 1.32336 * 121.48895 * 179.97438 * 20 19 18 22 22 N 1.31194 * 122.97473 * 0.02562 * 21 20 19 23 23 C 1.34112 * 120.46168 * 359.97438 * 22 21 20 24 24 C 1.40153 * 121.98047 * 179.97438 * 23 22 21 25 25 C 1.36317 * 119.57922 * 180.02562 * 24 23 22 26 26 C 1.39213 * 121.02702 * 359.97183 * 25 24 23 27 27 C 1.36389 * 120.90413 * 0.02562 * 26 25 24 28 28 C 1.39935 * 119.49939 * 359.78327 * 27 26 25 29 29 C 1.47442 * 108.56721 * 335.90189 * 18 17 16 30 30 H 1.08999 * 109.46914 * 185.61063 * 1 2 3 31 31 H 1.09008 * 109.47264 * 305.60202 * 1 2 3 32 32 H 1.08997 * 109.47169 * 65.60442 * 1 2 3 33 33 H 1.08996 * 109.47258 * 239.99840 * 2 1 3 34 34 H 1.09001 * 109.47251 * 119.99536 * 2 1 3 35 35 H 0.97000 * 119.99992 * 179.97438 * 8 7 5 36 36 H 1.00898 * 110.99946 * 30.54783 * 13 3 2 37 37 H 1.08996 * 110.99472 * 323.98771 * 16 14 13 38 38 H 1.08998 * 110.98828 * 87.76594 * 16 14 13 39 39 H 1.09004 * 110.37658 * 278.24124 * 17 16 14 40 40 H 1.09004 * 110.37641 * 155.90213 * 17 16 14 41 41 H 1.08003 * 118.50799 * 179.97438 * 21 20 19 42 42 H 1.08003 * 120.21479 * 359.97438 * 24 23 22 43 43 H 1.08003 * 119.48793 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.54589 * 180.02562 * 26 25 24 45 45 H 1.07992 * 120.25121 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.88484 * 120.39604 * 29 18 17 47 47 H 1.09002 * 109.88997 * 241.42462 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4449 0.1397 6 1 4.1539 1.8866 -0.6316 7 6 4.1301 0.8832 1.2522 8 7 3.3830 0.3449 2.1913 9 14 5.9900 0.8867 1.4258 10 1 6.5963 1.5483 0.2426 11 1 6.3710 1.6268 2.6555 12 1 6.4812 -0.5117 1.5174 13 7 1.6646 2.0946 -1.2617 14 6 1.5724 3.5511 -1.0945 15 1 2.2864 3.8978 -0.3475 16 6 0.1294 3.9728 -0.7115 17 6 0.0786 5.4287 -1.2381 18 7 0.8562 5.4027 -2.4953 19 6 1.5245 6.5930 -2.6874 20 7 2.3841 7.0454 -1.7841 21 6 3.0321 8.1862 -1.9571 22 7 2.8752 8.9429 -3.0172 23 6 2.0298 8.5795 -3.9928 24 6 1.8373 9.3636 -5.1384 25 6 0.9650 8.9475 -6.0998 26 6 0.2615 7.7541 -5.9625 27 6 0.4252 6.9673 -4.8606 28 6 1.3161 7.3638 -3.8570 29 6 1.7989 4.2703 -2.4410 30 1 -0.3633 -1.0227 0.1005 31 1 -0.3634 0.5983 0.8356 32 1 -0.3633 0.4244 -0.9359 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.7979 -0.0506 2.9739 36 1 0.8010 1.7165 -1.6212 37 1 -0.6072 3.3487 -1.2174 38 1 -0.0124 3.9426 0.3688 39 1 0.5394 6.1080 -0.5209 40 1 -0.9516 5.7253 -1.4352 41 1 3.7208 8.5092 -1.1903 42 1 2.3759 10.2920 -5.2584 43 1 0.8181 9.5527 -6.9822 44 1 -0.4233 7.4472 -6.7393 45 1 -0.1256 6.0433 -4.7651 46 1 1.6026 3.5846 -3.2653 47 1 2.8235 4.6375 -2.5003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:59 Heat of formation + Delta-G solvation = 84.276407 kcal Electronic energy + Delta-G solvation = -27580.274907 eV Core-core repulsion = 23956.106437 eV Total energy + Delta-G solvation = -3624.168470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61845 -39.18902 -37.69692 -36.17195 -34.03108 -32.30843 -31.69574 -31.14114 -30.29116 -29.25799 -27.79836 -25.96566 -24.57817 -24.30419 -22.80029 -22.33591 -21.04424 -20.27703 -19.63095 -18.67433 -18.29624 -17.17612 -16.23417 -15.74106 -15.53519 -15.20601 -15.00362 -14.66369 -14.39412 -14.12400 -14.02325 -13.76832 -13.04182 -12.98065 -12.84697 -12.68002 -12.35960 -12.30166 -12.11860 -11.92273 -11.78567 -11.45800 -11.24747 -11.10443 -10.94267 -10.88680 -10.73148 -10.59172 -10.35736 -9.96792 -9.72969 -9.63245 -9.43822 -9.39039 -9.08251 -8.72320 -8.48698 -8.35665 -7.26298 -5.97565 -4.01489 0.03377 0.57469 1.67816 2.80217 3.31386 3.39569 3.42504 3.45187 3.89080 3.99393 4.08717 4.44728 4.50542 4.58177 4.66783 4.89257 4.96342 5.01215 5.11992 5.20745 5.26752 5.32639 5.48965 5.61038 5.68868 5.72731 5.82440 5.90322 5.94351 6.02288 6.12832 6.14181 6.15206 6.15997 6.19887 6.34758 6.40732 6.49550 6.51242 6.73902 6.82556 6.91638 7.06478 7.11273 7.16235 7.48395 7.76617 7.91659 8.01973 8.26538 8.38083 8.73148 9.06851 9.63854 11.07716 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003122 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.471227 B = 8967.483358 C =10028.615917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.676 5.676 14 C 0.088 3.912 15 H 0.093 0.907 16 C -0.156 4.156 17 C 0.052 3.948 18 N -0.488 5.488 19 C 0.401 3.599 20 N -0.555 5.555 21 C 0.316 3.684 22 N -0.521 5.521 23 C 0.163 3.837 24 C -0.113 4.113 25 C -0.077 4.077 26 C -0.137 4.137 27 C -0.047 4.047 28 C -0.145 4.145 29 C 0.063 3.937 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.259 0.741 36 H 0.321 0.679 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.194 0.806 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.145 0.855 46 H 0.091 0.909 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 14.507 -13.084 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.306 5.306 14 C -0.025 4.025 15 H 0.111 0.889 16 C -0.196 4.196 17 C -0.074 4.074 18 N -0.212 5.212 19 C 0.151 3.849 20 N -0.273 5.273 21 C 0.026 3.974 22 N -0.235 5.235 23 C 0.035 3.965 24 C -0.131 4.131 25 C -0.098 4.098 26 C -0.155 4.155 27 C -0.068 4.068 28 C -0.151 4.151 29 C -0.064 4.064 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.211 0.789 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.163 0.837 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.733 14.776 -12.894 21.080 hybrid contribution 0.208 -0.109 0.809 0.842 sum -7.525 14.666 -12.085 20.440 Atomic orbital electron populations 1.21877 0.99567 0.99717 0.99501 1.21775 0.91247 1.00365 1.03112 1.19162 0.95406 0.89900 0.84137 0.97892 1.21255 0.91312 1.36386 1.04201 0.92094 1.24945 0.98046 0.95639 0.95860 1.69878 1.34566 1.39577 1.09586 0.86517 0.85896 0.77578 0.77883 1.19814 1.21235 1.21138 1.60615 1.36333 1.00814 1.32828 1.22606 0.94257 0.90557 0.95055 0.88887 1.23453 0.99731 0.94896 1.01521 1.23034 0.97481 0.98692 0.88238 1.61525 1.22948 0.99824 1.36938 1.20608 0.86348 0.90202 0.87723 1.68589 1.09397 1.16307 1.32962 1.24743 0.93849 0.85407 0.93433 1.68807 1.18403 1.33840 1.02462 1.18973 0.91921 0.91602 0.93995 1.20692 0.99913 1.00265 0.92280 1.21049 0.94421 0.95982 0.98354 1.21033 1.00841 0.95123 0.98548 1.21051 0.94805 0.99445 0.91482 1.19252 1.01700 0.96882 0.97260 1.22921 0.93532 0.89758 1.00161 0.94424 0.93899 0.94618 0.94054 0.88233 0.93156 0.86090 0.90786 0.90464 0.91819 0.90267 0.78906 0.84463 0.85071 0.85160 0.83725 0.89121 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.65 37.16 0.36 -2.40 16 2 C -0.13 -2.88 5.36 -26.73 -0.14 -3.03 16 3 C 0.22 5.27 1.89 -68.87 -0.13 5.14 16 4 H 0.00 0.09 7.85 -51.93 -0.41 -0.32 16 5 C -0.49 -13.36 8.57 -34.44 -0.30 -13.65 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.18 11.29 55.43 0.63 -24.55 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.68 -13.49 6.11 -99.05 -0.60 -14.09 16 14 C 0.09 1.57 3.01 -65.89 -0.20 1.37 16 15 H 0.09 1.97 7.72 -51.93 -0.40 1.57 16 16 C -0.16 -2.31 6.66 -24.60 -0.16 -2.48 16 17 C 0.05 0.70 6.62 -2.30 -0.02 0.69 16 18 N -0.49 -6.84 4.43 -169.47 -0.75 -7.59 16 19 C 0.40 5.83 5.16 -154.97 -0.80 5.03 16 20 N -0.56 -8.46 9.24 -13.54 -0.13 -8.59 16 21 C 0.32 4.29 12.22 -92.20 -1.13 3.16 16 22 N -0.52 -7.21 10.45 -12.65 -0.13 -7.34 16 23 C 0.16 2.13 6.61 -84.86 -0.56 1.57 16 24 C -0.11 -1.15 10.01 -39.56 -0.40 -1.54 16 25 C -0.08 -0.62 9.95 -39.91 -0.40 -1.01 16 26 C -0.14 -1.14 9.96 -39.89 -0.40 -1.54 16 27 C -0.05 -0.50 9.59 -39.61 -0.38 -0.88 16 28 C -0.14 -1.91 5.75 -106.68 -0.61 -2.52 16 29 C 0.06 1.00 6.50 -2.83 -0.02 0.98 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.32 5.81 6.08 -39.29 -0.24 5.57 16 37 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.93 7.23 -51.93 -0.38 0.55 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.19 2.03 8.06 -52.48 -0.42 1.61 16 42 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 43 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 45 H 0.15 1.43 7.66 -52.49 -0.40 1.02 16 46 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 47 H 0.06 1.07 7.38 -51.93 -0.38 0.69 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -29.60 376.55 -12.74 -42.34 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.03 Total: 7.34 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -5.37 Total: -9.69 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.99 Total: -62.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.60 -12.74 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.613 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds