Wall clock time and date at job start Tue Mar 31 2020 15:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47604 * 2 1 4 4 H 1.09007 * 109.47041 * 303.69019 * 3 2 1 5 5 C 1.50697 * 109.47585 * 183.68907 * 3 2 1 6 6 H 1.07997 * 120.00035 * 240.00199 * 5 3 2 7 7 C 1.37882 * 119.99904 * 59.99742 * 5 3 2 8 8 N 1.31513 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99805 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47281 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46890 * 120.00095 * 9 7 5 12 12 H 1.48496 * 109.47199 * 239.99868 * 9 7 5 13 13 N 1.46901 * 109.47026 * 63.68595 * 3 2 1 14 14 C 1.46894 * 111.00215 * 258.62684 * 13 3 2 15 15 H 1.09003 * 110.27531 * 37.21566 * 14 13 3 16 16 C 1.54598 * 110.30965 * 275.02467 * 14 13 3 17 17 C 1.54943 * 102.92325 * 219.12580 * 16 14 13 18 18 N 1.48530 * 103.22716 * 37.41232 * 17 16 14 19 19 C 1.37845 * 111.00212 * 200.28025 * 18 17 16 20 20 N 1.32641 * 120.91273 * 80.78413 * 19 18 17 21 21 C 1.32336 * 121.49384 * 179.97438 * 20 19 18 22 22 N 1.31189 * 122.96799 * 359.97438 * 21 20 19 23 23 C 1.34113 * 120.46917 * 0.02562 * 22 21 20 24 24 C 1.40153 * 121.99015 * 179.97438 * 23 22 21 25 25 C 1.36315 * 119.58157 * 180.02562 * 24 23 22 26 26 C 1.39213 * 121.03098 * 359.97438 * 25 24 23 27 27 C 1.36390 * 120.89960 * 359.97438 * 26 25 24 28 28 C 1.39935 * 119.49994 * 359.79048 * 27 26 25 29 29 C 1.47904 * 105.82012 * 320.79414 * 18 17 16 30 30 H 1.09001 * 109.46845 * 301.19079 * 1 2 3 31 31 H 1.09003 * 109.47002 * 61.19344 * 1 2 3 32 32 H 1.08997 * 109.47586 * 181.18981 * 1 2 3 33 33 H 1.09003 * 109.47125 * 120.00102 * 2 1 3 34 34 H 1.09002 * 109.47317 * 239.99786 * 2 1 3 35 35 H 0.96999 * 119.99913 * 180.02562 * 8 7 5 36 36 H 1.00901 * 111.00068 * 22.58108 * 13 3 2 37 37 H 1.08997 * 110.72186 * 337.48346 * 16 14 13 38 38 H 1.08998 * 110.72924 * 100.76649 * 16 14 13 39 39 H 1.08995 * 110.66322 * 278.97821 * 17 16 14 40 40 H 1.08997 * 110.81204 * 155.91454 * 17 16 14 41 41 H 1.07994 * 118.51293 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.20491 * 359.97438 * 24 23 22 43 43 H 1.08003 * 119.48399 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.54971 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.24754 * 180.02562 * 27 26 25 46 46 H 1.08992 * 109.91929 * 265.97500 * 29 18 17 47 47 H 1.08999 * 109.91938 * 144.67942 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6238 1.9750 -0.8551 5 6 3.5443 1.4434 -0.0914 6 1 4.1327 1.8939 0.6942 7 6 4.1693 0.8691 -1.1780 8 7 3.4527 0.3209 -2.1348 9 14 6.0338 0.8709 -1.2916 10 1 6.6019 1.5451 -0.0966 11 1 6.5274 -0.5284 -1.3514 12 1 6.4543 1.5969 -2.5168 13 7 1.6245 2.1087 1.2415 14 6 0.4621 2.9764 1.0096 15 1 -0.2155 2.5159 0.2906 16 6 0.9204 4.3642 0.5055 17 6 -0.0422 5.3336 1.2365 18 7 -0.2008 4.7100 2.5751 19 6 -1.3427 5.1641 3.1996 20 7 -2.5304 4.6533 2.9031 21 6 -3.6340 5.0802 3.4958 22 7 -3.6358 6.0247 4.4063 23 6 -2.4888 6.6100 4.7812 24 6 -2.4538 7.6220 5.7501 25 6 -1.2602 8.1836 6.0938 26 6 -0.0731 7.7673 5.4977 27 6 -0.0713 6.7843 4.5522 28 6 -1.2792 6.1837 4.1803 29 6 -0.2719 3.2523 2.3350 30 1 -0.3633 0.5322 0.8791 31 1 -0.3633 0.4952 -0.9005 32 1 -0.3634 -1.0274 0.0213 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.8924 -0.0835 -2.8990 36 1 1.4333 1.4344 1.9673 37 1 1.9539 4.5570 0.7932 38 1 0.7988 4.4416 -0.5749 39 1 -1.0008 5.3857 0.7203 40 1 0.4004 6.3258 1.3243 41 1 -4.5756 4.6308 3.2172 42 1 -3.3669 7.9555 6.2208 43 1 -1.2351 8.9637 6.8403 44 1 0.8592 8.2284 5.7884 45 1 0.8559 6.4692 4.0968 46 1 -1.3129 2.9395 2.2551 47 1 0.2178 2.7175 3.1488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:02 Heat of formation + Delta-G solvation = 87.722335 kcal Electronic energy + Delta-G solvation = -27539.653867 eV Core-core repulsion = 23915.634824 eV Total energy + Delta-G solvation = -3624.019043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66573 -39.21659 -37.74967 -36.29200 -34.03537 -32.35597 -31.71363 -31.02798 -30.25580 -29.26883 -28.09756 -25.83125 -24.66029 -24.30041 -22.73452 -22.49253 -21.20904 -20.00037 -19.67717 -18.74491 -18.29841 -17.28301 -16.28268 -15.66735 -15.50308 -15.20268 -15.16634 -14.59434 -14.44603 -14.28652 -14.07342 -13.57799 -13.48574 -12.99088 -12.79102 -12.68154 -12.48222 -12.33005 -12.12204 -11.83543 -11.66633 -11.39136 -11.18280 -11.07370 -10.89973 -10.81527 -10.76807 -10.59650 -10.43592 -10.04060 -9.75111 -9.69568 -9.50504 -9.45971 -9.07916 -8.89686 -8.40403 -8.32505 -7.21283 -5.96638 -3.99222 -0.00063 0.52639 1.63744 2.75732 3.32131 3.37139 3.40398 3.45736 3.84154 3.93569 4.01455 4.44892 4.46939 4.53669 4.64886 4.85786 4.95020 5.06400 5.06903 5.16968 5.22923 5.33506 5.39186 5.56542 5.64110 5.68611 5.78590 5.92315 5.95991 6.02683 6.08717 6.10694 6.12691 6.14054 6.16759 6.27863 6.37972 6.47089 6.55014 6.71384 6.80101 6.88846 6.97324 7.03793 7.19413 7.41765 7.75579 7.92633 7.95456 8.31242 8.55864 8.61216 9.09294 9.65869 11.09553 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.002812 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.531372 B = 9956.390919 C =10923.954836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.218 3.782 4 H 0.029 0.971 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.082 3.918 15 H 0.048 0.952 16 C -0.107 4.107 17 C 0.049 3.951 18 N -0.466 5.466 19 C 0.399 3.601 20 N -0.566 5.566 21 C 0.317 3.683 22 N -0.524 5.524 23 C 0.165 3.835 24 C -0.114 4.114 25 C -0.075 4.075 26 C -0.136 4.136 27 C -0.048 4.048 28 C -0.149 4.149 29 C 0.037 3.963 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.258 0.742 36 H 0.324 0.676 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.193 0.807 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 13.404 12.682 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.111 3.889 4 H 0.047 0.953 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.302 5.302 14 C -0.029 4.029 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.077 4.077 18 N -0.189 5.189 19 C 0.149 3.851 20 N -0.284 5.284 21 C 0.026 3.974 22 N -0.239 5.239 23 C 0.038 3.962 24 C -0.133 4.133 25 C -0.096 4.096 26 C -0.155 4.155 27 C -0.068 4.068 28 C -0.155 4.155 29 C -0.090 4.090 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.210 0.790 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.091 0.909 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.447 13.605 12.602 21.793 hybrid contribution 0.268 -0.733 -0.510 0.933 sum -11.179 12.872 12.091 20.901 Atomic orbital electron populations 1.21916 0.99564 0.99413 0.99757 1.22232 0.91398 1.02044 1.03047 1.19220 0.95241 0.88540 0.85907 0.95302 1.21265 0.91042 1.35180 1.05205 0.91835 1.24963 0.98149 0.95718 0.95849 1.69878 1.34732 1.39280 1.09964 0.86498 0.85906 0.77470 0.77863 1.19735 1.21317 1.21275 1.60934 1.32292 1.25605 1.11355 1.22332 0.91971 0.94971 0.93628 0.93375 1.22584 1.00219 0.92781 0.98986 1.23362 0.99775 0.99162 0.85351 1.62360 1.27660 1.07848 1.21008 1.20681 0.88343 0.87316 0.88757 1.68463 0.99260 1.31874 1.28826 1.24681 0.96192 0.89118 0.87394 1.68790 1.28505 1.10891 1.15705 1.18948 0.87794 0.94710 0.94780 1.20682 0.99081 0.96175 0.97391 1.21066 0.92105 0.98297 0.98122 1.21048 0.98635 0.98216 0.97562 1.21095 0.97387 0.93370 0.94995 1.19198 0.96013 1.00316 0.99932 1.23232 1.01161 0.85380 0.99245 0.94708 0.93838 0.94661 0.94553 0.88249 0.93209 0.85806 0.88743 0.90949 0.92950 0.89632 0.79021 0.84467 0.85026 0.85048 0.83608 0.90909 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.78 37.16 0.33 -2.50 16 2 C -0.15 -3.35 5.07 -26.73 -0.14 -3.49 16 3 C 0.22 5.15 2.07 -68.87 -0.14 5.01 16 4 H 0.03 0.76 7.53 -51.92 -0.39 0.37 16 5 C -0.49 -13.02 8.84 -34.44 -0.30 -13.33 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.44 5.30 -17.82 -0.09 1.35 16 8 N -0.90 -25.09 11.30 55.43 0.63 -24.46 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.67 -13.28 5.81 -99.53 -0.58 -13.86 16 14 C 0.08 1.39 2.23 -66.36 -0.15 1.25 16 15 H 0.05 0.87 6.33 -51.93 -0.33 0.54 16 16 C -0.11 -1.69 6.64 -24.87 -0.17 -1.86 16 17 C 0.05 0.65 6.49 -1.90 -0.01 0.64 16 18 N -0.47 -6.51 4.54 -168.72 -0.77 -7.27 16 19 C 0.40 5.52 5.59 -154.98 -0.87 4.65 16 20 N -0.57 -7.81 8.78 -13.55 -0.12 -7.93 16 21 C 0.32 3.87 12.22 -92.20 -1.13 2.74 16 22 N -0.52 -6.77 10.45 -12.66 -0.13 -6.90 16 23 C 0.16 2.07 6.61 -84.86 -0.56 1.50 16 24 C -0.11 -1.12 10.01 -39.56 -0.40 -1.51 16 25 C -0.07 -0.59 9.95 -39.91 -0.40 -0.98 16 26 C -0.14 -1.15 9.96 -39.89 -0.40 -1.55 16 27 C -0.05 -0.51 9.59 -39.61 -0.38 -0.89 16 28 C -0.15 -1.90 5.75 -106.68 -0.61 -2.51 16 29 C 0.04 0.55 6.29 -2.75 -0.02 0.53 16 30 H 0.03 0.60 6.34 -51.93 -0.33 0.27 16 31 H 0.04 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.10 2.58 5.98 -51.93 -0.31 2.27 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.32 6.15 7.31 -39.29 -0.29 5.86 16 37 H 0.09 1.64 8.06 -51.93 -0.42 1.22 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.71 7.99 -51.93 -0.42 0.29 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.19 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.15 1.53 7.66 -52.49 -0.40 1.12 16 46 H 0.07 1.11 6.59 -51.93 -0.34 0.76 16 47 H 0.09 1.31 7.54 -51.93 -0.39 0.91 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -29.24 373.42 -12.76 -41.99 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.96 Total: 7.60 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -5.43 Total: -10.94 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.97 Total: -60.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.24 -12.76 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.716 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds