Wall clock time and date at job start Tue Mar 31 2020 15:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47604 * 2 1 4 4 H 1.09007 * 109.47041 * 303.69019 * 3 2 1 5 5 C 1.50697 * 109.47585 * 183.68907 * 3 2 1 6 6 H 1.07997 * 120.00035 * 240.00199 * 5 3 2 7 7 C 1.37882 * 119.99904 * 59.99742 * 5 3 2 8 8 N 1.31513 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99805 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47281 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46890 * 120.00095 * 9 7 5 12 12 H 1.48496 * 109.47199 * 239.99868 * 9 7 5 13 13 N 1.46901 * 109.47026 * 63.68595 * 3 2 1 14 14 C 1.46894 * 111.00215 * 258.62684 * 13 3 2 15 15 H 1.09003 * 110.27531 * 37.21566 * 14 13 3 16 16 C 1.54598 * 110.30965 * 275.02467 * 14 13 3 17 17 C 1.54943 * 102.92325 * 219.12580 * 16 14 13 18 18 N 1.48530 * 103.22716 * 37.41232 * 17 16 14 19 19 C 1.37845 * 111.00212 * 200.28025 * 18 17 16 20 20 N 1.32641 * 120.91273 * 80.78413 * 19 18 17 21 21 C 1.32336 * 121.49384 * 179.97438 * 20 19 18 22 22 N 1.31189 * 122.96799 * 359.97438 * 21 20 19 23 23 C 1.34113 * 120.46917 * 0.02562 * 22 21 20 24 24 C 1.40153 * 121.99015 * 179.97438 * 23 22 21 25 25 C 1.36315 * 119.58157 * 180.02562 * 24 23 22 26 26 C 1.39213 * 121.03098 * 359.97438 * 25 24 23 27 27 C 1.36390 * 120.89960 * 359.97438 * 26 25 24 28 28 C 1.39935 * 119.49994 * 359.79048 * 27 26 25 29 29 C 1.47904 * 105.82012 * 320.79414 * 18 17 16 30 30 H 1.09001 * 109.46845 * 301.19079 * 1 2 3 31 31 H 1.09003 * 109.47002 * 61.19344 * 1 2 3 32 32 H 1.08997 * 109.47586 * 181.18981 * 1 2 3 33 33 H 1.09003 * 109.47125 * 120.00102 * 2 1 3 34 34 H 1.09002 * 109.47317 * 239.99786 * 2 1 3 35 35 H 0.96999 * 119.99913 * 180.02562 * 8 7 5 36 36 H 1.00901 * 111.00068 * 22.58108 * 13 3 2 37 37 H 1.08997 * 110.72186 * 337.48346 * 16 14 13 38 38 H 1.08998 * 110.72924 * 100.76649 * 16 14 13 39 39 H 1.08995 * 110.66322 * 278.97821 * 17 16 14 40 40 H 1.08997 * 110.81204 * 155.91454 * 17 16 14 41 41 H 1.07994 * 118.51293 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.20491 * 359.97438 * 24 23 22 43 43 H 1.08003 * 119.48399 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.54971 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.24754 * 180.02562 * 27 26 25 46 46 H 1.08992 * 109.91929 * 265.97500 * 29 18 17 47 47 H 1.08999 * 109.91938 * 144.67942 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6238 1.9750 -0.8551 5 6 3.5443 1.4434 -0.0914 6 1 4.1327 1.8939 0.6942 7 6 4.1693 0.8691 -1.1780 8 7 3.4527 0.3209 -2.1348 9 14 6.0338 0.8709 -1.2916 10 1 6.6019 1.5451 -0.0966 11 1 6.5274 -0.5284 -1.3514 12 1 6.4543 1.5969 -2.5168 13 7 1.6245 2.1087 1.2415 14 6 0.4621 2.9764 1.0096 15 1 -0.2155 2.5159 0.2906 16 6 0.9204 4.3642 0.5055 17 6 -0.0422 5.3336 1.2365 18 7 -0.2008 4.7100 2.5751 19 6 -1.3427 5.1641 3.1996 20 7 -2.5304 4.6533 2.9031 21 6 -3.6340 5.0802 3.4958 22 7 -3.6358 6.0247 4.4063 23 6 -2.4888 6.6100 4.7812 24 6 -2.4538 7.6220 5.7501 25 6 -1.2602 8.1836 6.0938 26 6 -0.0731 7.7673 5.4977 27 6 -0.0713 6.7843 4.5522 28 6 -1.2792 6.1837 4.1803 29 6 -0.2719 3.2523 2.3350 30 1 -0.3633 0.5322 0.8791 31 1 -0.3633 0.4952 -0.9005 32 1 -0.3634 -1.0274 0.0213 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.8924 -0.0835 -2.8990 36 1 1.4333 1.4344 1.9673 37 1 1.9539 4.5570 0.7932 38 1 0.7988 4.4416 -0.5749 39 1 -1.0008 5.3857 0.7203 40 1 0.4004 6.3258 1.3243 41 1 -4.5756 4.6308 3.2172 42 1 -3.3669 7.9555 6.2208 43 1 -1.2351 8.9637 6.8403 44 1 0.8592 8.2284 5.7884 45 1 0.8559 6.4692 4.0968 46 1 -1.3129 2.9395 2.2551 47 1 0.2178 2.7175 3.1488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:02 Heat of formation + Delta-G solvation = 71.756283 kcal Electronic energy + Delta-G solvation = -27540.346207 eV Core-core repulsion = 23915.634824 eV Total energy + Delta-G solvation = -3624.711383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.57525 -40.37451 -38.61121 -37.83820 -35.28872 -34.04608 -32.81698 -32.17180 -31.37492 -30.36869 -29.65865 -27.53896 -25.58283 -25.21320 -24.50600 -23.48105 -22.24148 -21.51016 -21.33244 -19.58760 -19.20342 -18.42168 -18.08585 -17.03535 -16.51826 -16.43686 -16.18081 -16.08314 -15.60096 -15.22112 -15.16173 -14.95807 -14.86359 -14.55818 -14.13076 -13.75120 -13.55929 -13.42909 -13.36790 -13.18281 -13.07336 -12.77483 -12.58961 -12.56007 -12.43376 -12.25373 -11.97380 -11.89135 -11.87245 -11.76347 -11.59910 -11.43367 -10.96118 -10.43596 -10.39646 -10.27214 -9.96526 -9.26118 -8.88816 -8.03314 -6.13147 -0.86573 -0.29485 0.80280 1.42923 1.45778 1.57295 1.97616 2.34029 2.47699 2.98846 3.08402 3.15278 3.23489 3.49614 3.58938 3.68909 3.74678 3.87508 4.04258 4.21890 4.26805 4.28215 4.39679 4.43304 4.44253 4.51632 4.62887 4.65723 4.69932 4.74738 4.83505 4.92241 4.96351 4.99378 5.06279 5.17982 5.24406 5.24905 5.27666 5.37098 5.44518 5.45433 5.62569 5.76349 5.79056 5.89892 5.93143 6.04474 6.38926 6.72566 6.90178 7.01482 7.03672 7.56162 9.00757 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.002812 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.531372 B = 9956.390919 C =10923.954836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.229 3.771 4 H -0.001 1.001 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.671 5.671 14 C 0.084 3.916 15 H 0.039 0.961 16 C -0.104 4.104 17 C 0.061 3.939 18 N -0.464 5.464 19 C 0.381 3.619 20 N -0.582 5.582 21 C 0.304 3.696 22 N -0.533 5.533 23 C 0.141 3.859 24 C -0.124 4.124 25 C -0.061 4.061 26 C -0.122 4.122 27 C -0.068 4.068 28 C -0.161 4.161 29 C 0.049 3.951 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.258 0.742 36 H 0.330 0.670 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.218 0.782 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.162 0.838 45 H 0.144 0.856 46 H 0.072 0.928 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 15.201 14.746 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.120 3.880 4 H 0.017 0.983 5 C -0.543 4.543 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.302 5.302 14 C -0.028 4.028 15 H 0.056 0.944 16 C -0.143 4.143 17 C -0.065 4.065 18 N -0.186 5.186 19 C 0.131 3.869 20 N -0.301 5.301 21 C 0.014 3.986 22 N -0.247 5.247 23 C 0.014 3.986 24 C -0.143 4.143 25 C -0.081 4.081 26 C -0.140 4.140 27 C -0.088 4.088 28 C -0.167 4.167 29 C -0.078 4.078 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.235 0.765 42 H 0.169 0.831 43 H 0.189 0.811 44 H 0.180 0.820 45 H 0.161 0.839 46 H 0.090 0.910 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.608 15.412 14.683 24.246 hybrid contribution 0.300 -1.184 -1.059 1.616 sum -11.308 14.229 13.625 22.714 Atomic orbital electron populations 1.21763 0.96648 1.00785 1.00190 1.22055 0.93987 1.00828 1.01294 1.18915 0.93704 0.89028 0.86340 0.98307 1.21553 0.92772 1.35011 1.04970 0.92913 1.25657 1.02123 0.95517 0.95645 1.70008 1.36168 1.39826 1.10323 0.85570 0.81173 0.77432 0.77802 1.19348 1.20987 1.20998 1.60810 1.34084 1.25465 1.09855 1.22321 0.90968 0.94743 0.94721 0.94357 1.22480 0.99918 0.92955 0.98954 1.23262 0.99011 0.99257 0.84950 1.62358 1.28359 1.06906 1.20997 1.20747 0.88200 0.88367 0.89547 1.68426 0.99709 1.32417 1.29507 1.25168 0.96696 0.89314 0.87414 1.68816 1.28972 1.11084 1.15855 1.19381 0.87611 0.95763 0.95841 1.20983 1.00689 0.95680 0.96943 1.21519 0.90911 0.98005 0.97707 1.21465 1.00251 0.96554 0.95685 1.21186 0.96568 0.94650 0.96426 1.19347 0.97035 1.00396 0.99925 1.23013 1.00564 0.86495 0.97724 0.93038 0.94530 0.92843 0.94633 0.91522 0.93268 0.85221 0.90346 0.91538 0.93040 0.87722 0.76537 0.83052 0.81135 0.82011 0.83863 0.90965 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.78 71.98 0.63 -4.51 16 2 C -0.14 -6.56 5.07 30.59 0.16 -6.40 16 3 C 0.23 11.08 2.07 44.17 0.09 11.17 16 4 H 0.00 -0.05 7.53 -2.38 -0.02 -0.07 16 5 C -0.50 -27.49 8.84 25.60 0.23 -27.27 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.45 5.30 84.66 0.45 0.90 16 8 N -0.92 -52.68 11.30 21.45 0.24 -52.44 16 9 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.67 -27.01 5.81 -468.82 -2.72 -29.73 16 14 C 0.08 2.87 2.23 45.80 0.10 2.97 16 15 H 0.04 1.41 6.33 -2.39 -0.02 1.39 16 16 C -0.10 -3.36 6.64 31.80 0.21 -3.15 16 17 C 0.06 1.61 6.49 86.65 0.56 2.17 16 18 N -0.46 -12.81 4.54 -687.72 -3.12 -15.93 16 19 C 0.38 10.40 5.59 134.00 0.75 11.15 16 20 N -0.58 -15.93 8.78 -196.77 -1.73 -17.66 16 21 C 0.30 7.29 12.22 180.90 2.21 9.50 16 22 N -0.53 -13.35 10.45 -193.95 -2.03 -15.37 16 23 C 0.14 3.36 6.61 40.10 0.27 3.63 16 24 C -0.12 -2.11 10.01 22.29 0.22 -1.89 16 25 C -0.06 -0.71 9.95 22.06 0.22 -0.49 16 26 C -0.12 -1.63 9.96 22.07 0.22 -1.41 16 27 C -0.07 -1.34 9.59 22.25 0.21 -1.12 16 28 C -0.16 -3.97 5.75 -21.20 -0.12 -4.09 16 29 C 0.05 1.47 6.29 86.45 0.54 2.02 16 30 H 0.05 1.75 6.34 -2.39 -0.02 1.73 16 31 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.07 3.55 5.98 -2.39 -0.01 3.53 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.33 12.54 7.31 -89.69 -0.66 11.88 16 37 H 0.08 2.79 8.06 -2.39 -0.02 2.77 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.38 7.99 -2.39 -0.02 1.36 16 40 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.22 3.67 8.06 -2.91 -0.02 3.65 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 44 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 45 H 0.14 2.83 7.66 -2.91 -0.02 2.80 16 46 H 0.07 2.18 6.59 -2.39 -0.02 2.17 16 47 H 0.08 2.53 7.54 -2.39 -0.02 2.51 16 Total: -1.00 -64.60 373.42 -0.05 -64.66 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.32 Total: 27.38 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.95 Total: -6.83 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -9.36 Total: -131.13 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.60 -0.05 -64.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.411 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds