Wall clock time and date at job start Tue Mar 31 2020 14:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46735 * 179.97438 * 5 4 3 7 7 C 1.42899 * 113.99785 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47170 * 179.97438 * 7 6 5 9 9 C 1.38237 * 120.00524 * 269.73391 * 8 7 6 10 10 C 1.38231 * 119.99889 * 179.76324 * 9 8 7 11 11 C 1.38237 * 120.00201 * 0.51005 * 10 9 8 12 12 C 1.38225 * 120.00048 * 359.74045 * 11 10 9 13 13 C 1.38238 * 119.99741 * 90.00241 * 8 7 6 14 14 C 1.38819 * 120.00050 * 180.02562 * 2 1 3 15 15 C 1.39799 * 119.58408 * 184.72465 * 14 2 1 16 16 C 1.38596 * 119.49263 * 179.78316 * 15 14 2 17 17 C 1.38399 * 118.67787 * 0.47881 * 16 15 14 18 18 C 1.40549 * 119.14779 * 359.74658 * 17 16 15 19 19 C 1.41321 * 119.78524 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99462 * 0.02562 * 19 18 17 21 21 C 1.40016 * 120.00245 * 180.02562 * 19 18 17 22 22 N 1.30745 * 120.00202 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47441 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47156 * 120.00260 * 23 21 19 26 26 H 1.48500 * 109.47237 * 239.99820 * 23 21 19 27 27 N 1.31956 * 119.58829 * 4.98913 * 14 2 1 28 28 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 29 29 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 30 30 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 31 31 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 32 32 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 37 37 H 1.08997 * 109.47516 * 300.00458 * 7 6 5 38 38 H 1.09005 * 109.46944 * 60.00925 * 7 6 5 39 39 H 1.07994 * 119.99856 * 359.97438 * 9 8 7 40 40 H 1.08002 * 119.99903 * 180.22427 * 10 9 8 41 41 H 1.07999 * 119.99922 * 179.72446 * 11 10 9 42 42 H 1.08004 * 120.00691 * 179.97438 * 12 11 10 43 43 H 1.08001 * 119.99937 * 0.02562 * 13 8 7 44 44 H 1.08001 * 120.25555 * 359.97438 * 15 14 2 45 45 H 1.07994 * 120.66449 * 180.22380 * 16 15 14 46 46 H 1.07990 * 120.42198 * 179.76550 * 17 16 15 47 47 H 0.96998 * 119.99842 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2169 3.0358 -1.4425 6 8 3.4555 3.4481 -2.7898 7 6 4.1668 4.6823 -2.9026 8 6 4.3622 5.0182 -4.3586 9 6 5.4918 4.5793 -5.0237 10 6 5.6686 4.8834 -6.3605 11 6 4.7210 5.6352 -7.0296 12 6 3.5940 6.0785 -6.3633 13 6 3.4146 5.7700 -5.0277 14 6 2.1591 -1.2022 -0.0005 15 6 3.5535 -1.1942 0.0996 16 6 4.2443 -2.3957 0.1034 17 6 3.5270 -3.5745 -0.0029 18 6 2.1264 -3.5167 -0.1055 19 6 1.3806 -4.7121 -0.2152 20 1 1.8871 -5.6660 -0.2196 21 6 -0.0147 -4.6598 -0.3182 22 7 -0.6278 -3.5050 -0.3134 23 14 -1.0005 -6.2400 -0.4625 24 1 -0.0772 -7.4029 -0.4437 25 1 -1.9452 -6.3400 0.6788 26 1 -1.7628 -6.2332 -1.7369 27 7 1.4949 -2.3380 -0.1008 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.0414 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 2.6275 3.7952 -0.9288 36 1 4.1693 2.9059 -0.9286 37 1 3.5965 5.4758 -2.4196 38 1 5.1388 4.5870 -2.4185 39 1 6.2345 3.9961 -4.4997 40 1 6.5494 4.5374 -6.8811 41 1 4.8613 5.8765 -8.0729 42 1 2.8537 6.6662 -6.8858 43 1 2.5343 6.1169 -4.5069 44 1 4.0882 -0.2589 0.1765 45 1 5.3211 -2.4117 0.1836 46 1 4.0368 -4.5264 -0.0066 47 1 -1.5945 -3.4688 -0.3851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256503552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:06 Heat of formation + Delta-G solvation = 21.800223 kcal Electronic energy + Delta-G solvation = -26075.257273 eV Core-core repulsion = 22416.086882 eV Total energy + Delta-G solvation = -3659.170391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.58784 -38.52578 -37.78429 -35.91683 -33.40973 -32.73528 -31.45450 -31.13428 -30.18270 -29.15447 -27.00165 -26.07042 -25.01007 -23.75448 -22.81772 -21.79850 -21.38541 -21.08593 -19.64788 -17.45527 -17.13706 -16.55842 -16.44081 -15.93733 -15.64444 -15.09923 -14.84458 -14.69624 -14.32406 -14.07853 -13.73187 -13.68171 -13.51826 -13.17367 -12.94580 -12.77543 -12.48385 -12.14510 -11.90658 -11.71407 -11.70660 -11.27423 -11.24944 -11.18766 -11.04261 -11.01180 -10.87005 -10.67914 -10.47969 -10.26813 -9.86370 -9.67783 -9.41367 -9.14837 -9.07283 -8.65239 -7.87037 -7.45073 -6.38487 -6.30221 -4.44012 1.03224 1.17399 2.88115 3.13337 3.17608 3.24297 3.29970 3.35748 3.82683 4.00486 4.14326 4.57452 4.63066 4.77370 4.86204 4.88395 4.99881 5.09167 5.12425 5.23986 5.34732 5.40814 5.45741 5.51750 5.67469 5.72943 5.80214 5.84209 5.96180 6.09163 6.19958 6.20471 6.26351 6.30489 6.36689 6.46709 6.54985 6.66333 6.74447 6.78558 6.86640 6.93342 7.13009 7.15233 7.25277 7.62815 7.86159 7.98163 8.05210 8.40378 8.57232 8.83556 9.14000 10.26758 10.42652 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.002114 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.854132 B =13241.068806 C =13372.597295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.621 5.621 3 C 0.142 3.858 4 C -0.137 4.137 5 C 0.067 3.933 6 O -0.380 6.380 7 C 0.102 3.898 8 C -0.088 4.088 9 C -0.098 4.098 10 C -0.124 4.124 11 C -0.117 4.117 12 C -0.125 4.125 13 C -0.099 4.099 14 C 0.410 3.590 15 C -0.365 4.365 16 C -0.032 4.032 17 C -0.317 4.317 18 C 0.291 3.709 19 C -0.433 4.433 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.715 5.715 23 Si 0.904 3.096 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.525 5.525 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 18.574 -6.256 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.338 5.338 3 C 0.016 3.984 4 C -0.177 4.177 5 C -0.010 4.010 6 O -0.299 6.299 7 C 0.025 3.975 8 C -0.088 4.088 9 C -0.116 4.116 10 C -0.142 4.142 11 C -0.135 4.135 12 C -0.143 4.143 13 C -0.117 4.117 14 C 0.172 3.828 15 C -0.391 4.391 16 C -0.057 4.057 17 C -0.340 4.340 18 C 0.164 3.836 19 C -0.465 4.465 20 H 0.101 0.899 21 C -0.153 4.153 22 N -0.337 5.337 23 Si 0.729 3.271 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.246 5.246 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.671 18.649 -6.468 20.284 hybrid contribution 0.572 -0.482 0.057 0.750 sum 5.243 18.167 -6.412 19.966 Atomic orbital electron populations 1.21338 0.79880 1.01516 1.00185 1.45906 1.04704 1.01884 1.81318 1.21043 0.97362 0.85556 0.94392 1.22045 1.00875 0.95269 0.99475 1.22488 0.98954 0.96558 0.83044 1.88006 1.76457 1.38474 1.27007 1.21281 0.96339 0.87180 0.92675 1.19653 0.95246 0.98663 0.95281 1.21107 0.97421 0.98446 0.94670 1.21165 0.99542 0.98889 0.94586 1.21197 0.94442 0.97997 0.99863 1.21150 0.97932 1.00572 0.94620 1.21083 0.98173 0.97842 0.94649 1.18492 0.87321 0.86882 0.90096 1.20627 0.93296 0.96978 1.28163 1.20589 0.97011 0.92743 0.95312 1.21529 0.95652 0.96422 1.20369 1.18230 0.88304 0.90500 0.86591 1.19597 0.91145 0.92769 1.43027 0.89945 1.26027 0.98590 0.97052 0.93614 1.70144 1.09164 1.25018 1.29370 0.86336 0.79865 0.82532 0.78411 1.18519 1.19999 1.19992 1.68235 1.36391 0.95438 1.24572 0.95094 0.89118 0.94571 0.90808 0.91868 0.90573 0.91320 0.93477 0.93241 0.92589 0.92505 0.85844 0.85891 0.86064 0.85949 0.85951 0.89034 0.88988 0.88789 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.24 10.46 59.85 0.63 2.87 16 2 N -0.62 -12.82 2.98 -181.68 -0.54 -13.36 16 3 C 0.14 2.24 5.28 -4.04 -0.02 2.22 16 4 C -0.14 -2.09 5.91 -26.73 -0.16 -2.25 16 5 C 0.07 0.82 5.94 37.16 0.22 1.04 16 6 O -0.38 -5.19 10.33 -35.23 -0.36 -5.56 16 7 C 0.10 1.06 6.06 36.00 0.22 1.28 16 8 C -0.09 -0.96 5.51 -104.62 -0.58 -1.53 16 9 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 10 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 11 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16 12 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 13 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 14 C 0.41 10.15 7.37 -155.33 -1.14 9.01 16 15 C -0.36 -8.47 9.29 -38.87 -0.36 -8.84 16 16 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 17 C -0.32 -8.11 9.83 -38.65 -0.38 -8.49 16 18 C 0.29 8.15 6.55 -85.00 -0.56 7.60 16 19 C -0.43 -11.79 9.14 -37.74 -0.34 -12.14 16 20 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 21 C 0.07 1.84 5.50 -17.35 -0.10 1.75 16 22 N -0.72 -18.77 11.46 55.55 0.64 -18.13 16 23 Si 0.90 18.82 29.56 -169.99 -5.02 13.79 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 N -0.53 -14.53 6.64 -10.33 -0.07 -14.60 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.05 7.45 -51.93 -0.39 1.67 16 30 H 0.04 0.58 7.89 -51.93 -0.41 0.17 16 31 H 0.07 1.15 5.97 -51.93 -0.31 0.84 16 32 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.09 1.88 6.01 -52.49 -0.32 1.56 16 45 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 47 H 0.27 6.38 8.29 -40.82 -0.34 6.04 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -31.20 393.44 -11.66 -42.86 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.29 Total: 4.91 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -4.93 Total: -15.84 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.03 Total: -46.09 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.36 Total: -5.56 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.20 -11.66 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256503552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.661 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds