Wall clock time and date at job start Tue Mar 31 2020 14:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46735 * 179.97438 * 5 4 3 7 7 C 1.42899 * 113.99785 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47170 * 179.97438 * 7 6 5 9 9 C 1.38237 * 120.00524 * 269.73391 * 8 7 6 10 10 C 1.38231 * 119.99889 * 179.76324 * 9 8 7 11 11 C 1.38237 * 120.00201 * 0.51005 * 10 9 8 12 12 C 1.38225 * 120.00048 * 359.74045 * 11 10 9 13 13 C 1.38238 * 119.99741 * 90.00241 * 8 7 6 14 14 C 1.38819 * 120.00050 * 180.02562 * 2 1 3 15 15 C 1.39799 * 119.58408 * 184.72465 * 14 2 1 16 16 C 1.38596 * 119.49263 * 179.78316 * 15 14 2 17 17 C 1.38399 * 118.67787 * 0.47881 * 16 15 14 18 18 C 1.40549 * 119.14779 * 359.74658 * 17 16 15 19 19 C 1.41321 * 119.78524 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99462 * 0.02562 * 19 18 17 21 21 C 1.40016 * 120.00245 * 180.02562 * 19 18 17 22 22 N 1.30745 * 120.00202 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47441 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47156 * 120.00260 * 23 21 19 26 26 H 1.48500 * 109.47237 * 239.99820 * 23 21 19 27 27 N 1.31956 * 119.58829 * 4.98913 * 14 2 1 28 28 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 29 29 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 30 30 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 31 31 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 32 32 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 35 35 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 36 36 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 37 37 H 1.08997 * 109.47516 * 300.00458 * 7 6 5 38 38 H 1.09005 * 109.46944 * 60.00925 * 7 6 5 39 39 H 1.07994 * 119.99856 * 359.97438 * 9 8 7 40 40 H 1.08002 * 119.99903 * 180.22427 * 10 9 8 41 41 H 1.07999 * 119.99922 * 179.72446 * 11 10 9 42 42 H 1.08004 * 120.00691 * 179.97438 * 12 11 10 43 43 H 1.08001 * 119.99937 * 0.02562 * 13 8 7 44 44 H 1.08001 * 120.25555 * 359.97438 * 15 14 2 45 45 H 1.07994 * 120.66449 * 180.22380 * 16 15 14 46 46 H 1.07990 * 120.42198 * 179.76550 * 17 16 15 47 47 H 0.96998 * 119.99842 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2169 3.0358 -1.4425 6 8 3.4555 3.4481 -2.7898 7 6 4.1668 4.6823 -2.9026 8 6 4.3622 5.0182 -4.3586 9 6 5.4918 4.5793 -5.0237 10 6 5.6686 4.8834 -6.3605 11 6 4.7210 5.6352 -7.0296 12 6 3.5940 6.0785 -6.3633 13 6 3.4146 5.7700 -5.0277 14 6 2.1591 -1.2022 -0.0005 15 6 3.5535 -1.1942 0.0996 16 6 4.2443 -2.3957 0.1034 17 6 3.5270 -3.5745 -0.0029 18 6 2.1264 -3.5167 -0.1055 19 6 1.3806 -4.7121 -0.2152 20 1 1.8871 -5.6660 -0.2196 21 6 -0.0147 -4.6598 -0.3182 22 7 -0.6278 -3.5050 -0.3134 23 14 -1.0005 -6.2400 -0.4625 24 1 -0.0772 -7.4029 -0.4437 25 1 -1.9452 -6.3400 0.6788 26 1 -1.7628 -6.2332 -1.7369 27 7 1.4949 -2.3380 -0.1008 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 3.1500 1.1384 0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.0414 0.9508 -1.9564 34 1 1.5000 1.8408 -1.9563 35 1 2.6275 3.7952 -0.9288 36 1 4.1693 2.9059 -0.9286 37 1 3.5965 5.4758 -2.4196 38 1 5.1388 4.5870 -2.4185 39 1 6.2345 3.9961 -4.4997 40 1 6.5494 4.5374 -6.8811 41 1 4.8613 5.8765 -8.0729 42 1 2.8537 6.6662 -6.8858 43 1 2.5343 6.1169 -4.5069 44 1 4.0882 -0.2589 0.1765 45 1 5.3211 -2.4117 0.1836 46 1 4.0368 -4.5264 -0.0066 47 1 -1.5945 -3.4688 -0.3851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256503552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:05 Heat of formation + Delta-G solvation = 7.169104 kcal Electronic energy + Delta-G solvation = -26075.891726 eV Core-core repulsion = 22416.086882 eV Total energy + Delta-G solvation = -3659.804844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.36735 -40.22697 -38.78800 -37.48716 -35.27437 -33.85919 -32.58702 -31.95774 -31.81098 -30.96512 -28.44973 -27.29083 -26.43629 -25.27009 -23.50108 -23.13246 -22.83889 -22.20273 -21.31366 -19.31284 -17.95736 -17.84346 -17.46881 -17.13881 -16.59231 -16.50478 -16.30255 -15.99727 -15.83939 -15.52250 -15.02043 -14.90046 -14.66690 -14.36024 -14.22835 -13.81081 -13.75314 -13.63477 -13.31284 -13.09050 -12.87822 -12.85432 -12.73977 -12.56119 -12.53612 -12.29363 -12.05062 -11.93102 -11.83676 -11.71374 -11.64422 -11.25454 -10.57393 -10.46896 -9.84519 -9.80991 -9.77093 -9.38554 -8.21375 -8.14965 -6.44925 0.32020 0.47698 1.06296 1.35759 1.41868 1.56361 1.57252 2.25786 2.34483 2.66524 2.93615 3.15703 3.85527 3.89765 3.93084 4.06485 4.13178 4.20091 4.27353 4.30525 4.35221 4.37874 4.40780 4.47906 4.56036 4.59713 4.61507 4.64687 4.74852 4.79375 4.91719 4.95838 5.01729 5.06113 5.10898 5.11927 5.13699 5.30485 5.36155 5.37415 5.52746 5.58726 5.65039 5.75414 5.98792 6.07735 6.12898 6.17891 6.26417 6.62271 6.69556 6.91975 7.21258 8.35778 8.52850 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.002114 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.854132 B =13241.068806 C =13372.597295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.623 5.623 3 C 0.139 3.861 4 C -0.126 4.126 5 C 0.072 3.928 6 O -0.409 6.409 7 C 0.100 3.900 8 C -0.110 4.110 9 C -0.117 4.117 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.132 4.132 13 C -0.114 4.114 14 C 0.390 3.610 15 C -0.363 4.363 16 C -0.032 4.032 17 C -0.346 4.346 18 C 0.256 3.744 19 C -0.470 4.470 20 H 0.083 0.917 21 C 0.027 3.973 22 N -0.745 5.745 23 Si 0.984 3.016 24 H -0.258 1.258 25 H -0.266 1.266 26 H -0.268 1.268 27 N -0.555 5.555 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.100 0.900 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 20.350 -6.329 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.340 5.340 3 C 0.016 3.984 4 C -0.166 4.166 5 C -0.004 4.004 6 O -0.330 6.330 7 C 0.024 3.976 8 C -0.110 4.110 9 C -0.135 4.135 10 C -0.151 4.151 11 C -0.140 4.140 12 C -0.150 4.150 13 C -0.132 4.132 14 C 0.151 3.849 15 C -0.389 4.389 16 C -0.056 4.056 17 C -0.369 4.369 18 C 0.129 3.871 19 C -0.502 4.502 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.367 5.367 23 Si 0.805 3.195 24 H -0.181 1.181 25 H -0.191 1.191 26 H -0.193 1.193 27 N -0.277 5.277 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.118 0.882 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.890 20.479 -6.538 22.047 hybrid contribution 0.577 -0.870 0.035 1.044 sum 5.467 19.610 -6.503 21.371 Atomic orbital electron populations 1.21257 0.79643 1.01894 0.99553 1.46201 1.05214 1.02189 1.80361 1.21320 0.97845 0.84171 0.95065 1.21862 1.00111 0.96159 0.98452 1.22424 0.99587 0.95381 0.83049 1.87956 1.77146 1.40112 1.27751 1.21430 0.96849 0.86366 0.92907 1.19867 0.95866 0.99487 0.95812 1.21321 0.97718 0.98985 0.95456 1.21471 1.00413 0.98821 0.94395 1.21553 0.94073 0.97355 1.01042 1.21484 0.98533 1.00498 0.94458 1.21328 0.98462 0.98029 0.95361 1.18994 0.88528 0.87605 0.89777 1.20986 0.93006 0.98232 1.26646 1.21003 0.98835 0.92024 0.93724 1.21680 0.95239 0.97741 1.22206 1.18716 0.89714 0.91266 0.87447 1.19911 0.92543 0.92831 1.44903 0.89862 1.26903 0.99048 1.00793 0.92790 1.70240 1.09780 1.27178 1.29511 0.85135 0.77973 0.77766 0.78619 1.18142 1.19073 1.19341 1.68213 1.37486 0.96203 1.25796 0.96237 0.92543 0.90258 0.90191 0.88238 0.94117 0.92552 0.90808 0.91903 0.90871 0.91427 0.85485 0.84135 0.83754 0.83877 0.85022 0.86066 0.85419 0.88219 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.69 10.46 127.77 1.34 6.02 16 2 N -0.62 -25.36 2.98 -728.72 -2.17 -27.53 16 3 C 0.14 4.09 5.28 86.38 0.46 4.54 16 4 C -0.13 -3.70 5.91 30.60 0.18 -3.52 16 5 C 0.07 1.60 5.94 71.98 0.43 2.03 16 6 O -0.41 -10.67 10.33 -148.98 -1.54 -12.21 16 7 C 0.10 1.94 6.06 71.24 0.43 2.37 16 8 C -0.11 -2.29 5.51 -19.87 -0.11 -2.40 16 9 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 10 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 11 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 12 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 13 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 14 C 0.39 19.50 7.37 133.42 0.98 20.48 16 15 C -0.36 -16.61 9.29 22.73 0.21 -16.40 16 16 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 17 C -0.35 -18.15 9.83 22.87 0.22 -17.93 16 18 C 0.26 14.90 6.55 40.18 0.26 15.17 16 19 C -0.47 -26.60 9.14 23.46 0.21 -26.39 16 20 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 21 C 0.03 1.39 5.50 85.29 0.47 1.86 16 22 N -0.75 -40.38 11.46 21.83 0.25 -40.13 16 23 Si 0.98 39.36 29.56 68.60 2.03 41.39 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 27 N -0.55 -31.73 6.64 -186.59 -1.24 -32.96 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 2.61 7.45 -2.39 -0.02 2.60 16 30 H 0.08 2.36 7.89 -2.39 -0.02 2.35 16 31 H 0.08 2.27 5.97 -2.39 -0.01 2.25 16 32 H 0.10 2.24 7.89 -2.39 -0.02 2.23 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 38 H 0.07 1.12 8.08 -2.38 -0.02 1.10 16 39 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.12 4.70 6.01 -2.91 -0.02 4.69 16 45 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 46 H 0.10 4.91 8.06 -2.92 -0.02 4.89 16 47 H 0.28 13.45 8.29 -92.71 -0.77 12.68 16 Total: -1.00 -70.97 393.44 4.69 -66.29 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.94 Total: 30.24 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 6.42 Total: -25.08 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -3.16 Total: -100.63 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.54 Total: -12.21 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -70.97 4.69 -66.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256503552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.454 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds