Wall clock time and date at job start Tue Mar 31 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38303 * 120.08177 * 2 1 4 4 C 1.37828 * 120.22706 * 179.97438 * 3 2 1 5 5 C 1.39674 * 120.28160 * 359.95143 * 4 3 2 6 6 C 1.38613 * 119.03222 * 0.02562 * 5 4 3 7 7 C 1.38165 * 120.46531 * 0.02562 * 6 5 4 8 8 C 1.51213 * 108.54235 * 179.97438 * 6 5 4 9 9 C 1.53744 * 104.55512 * 359.74800 * 8 6 5 10 10 N 1.39663 * 129.33648 * 179.97438 * 5 4 3 11 11 C 1.38665 * 124.96033 * 0.02899 * 10 5 4 12 12 N 1.31225 * 126.47557 * 4.54359 * 11 10 5 13 13 N 1.28532 * 109.85181 * 179.74879 * 12 11 10 14 14 C 1.30315 * 110.05467 * 0.38959 * 13 12 11 15 15 C 1.50699 * 126.34199 * 179.88567 * 14 13 12 16 16 C 1.53005 * 109.46858 * 245.84883 * 15 14 13 17 17 C 1.53003 * 109.47214 * 125.85127 * 15 14 13 18 18 C 1.50701 * 109.47384 * 5.84661 * 15 14 13 19 19 H 1.07994 * 120.00307 * 245.10815 * 18 15 14 20 20 C 1.37875 * 119.99688 * 65.10835 * 18 15 14 21 21 N 1.31523 * 120.00095 * 178.79211 * 20 18 15 22 22 Si 1.86800 * 120.00190 * 359.06535 * 20 18 15 23 23 H 1.48500 * 109.47016 * 94.73781 * 22 20 18 24 24 H 1.48502 * 109.47265 * 214.73955 * 22 20 18 25 25 H 1.48505 * 109.47195 * 334.73974 * 22 20 18 26 26 N 1.36490 * 126.47783 * 184.52277 * 11 10 5 27 27 C 1.46502 * 127.12914 * 0.02562 * 26 11 10 28 28 H 1.09001 * 109.46945 * 90.00321 * 1 2 3 29 29 H 1.09001 * 109.47683 * 210.00370 * 1 2 3 30 30 H 1.09007 * 109.47104 * 330.00770 * 1 2 3 31 31 H 1.08000 * 119.88868 * 359.96919 * 3 2 1 32 32 H 1.07998 * 119.85765 * 179.97438 * 4 3 2 33 33 H 1.08011 * 119.91851 * 179.97438 * 7 6 5 34 34 H 1.08993 * 110.42028 * 118.77061 * 8 6 5 35 35 H 1.09009 * 110.41633 * 241.22713 * 8 6 5 36 36 H 1.09003 * 110.41746 * 241.39290 * 9 8 6 37 37 H 1.09006 * 110.17607 * 119.25740 * 9 8 6 38 38 H 1.08999 * 109.47013 * 174.59199 * 16 15 14 39 39 H 1.08995 * 109.46937 * 294.58866 * 16 15 14 40 40 H 1.09003 * 109.46933 * 54.59159 * 16 15 14 41 41 H 1.09002 * 109.46856 * 306.62149 * 17 15 14 42 42 H 1.08997 * 109.46931 * 66.62260 * 17 15 14 43 43 H 1.08998 * 109.46793 * 186.62715 * 17 15 14 44 44 H 0.96998 * 119.99733 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47180 * 275.84365 * 27 26 11 46 46 H 1.09000 * 109.47178 * 35.85090 * 27 26 11 47 47 H 1.09006 * 109.46655 * 155.84151 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1968 0.0000 4 6 3.5785 1.2002 0.0005 5 6 4.2859 -0.0041 0.0021 6 6 3.5815 -1.1980 0.0026 7 6 2.1999 -1.1961 0.0010 8 6 4.5719 -2.3406 0.0037 9 6 5.9494 -1.6579 -0.0028 10 7 5.6657 -0.2204 0.0024 11 6 6.6266 0.7792 0.0017 12 7 6.4089 2.0707 0.0842 13 7 7.5270 2.7042 0.0599 14 6 8.5157 1.8619 -0.0470 15 6 9.9809 2.2082 -0.1107 16 6 10.5350 1.8300 -1.4859 17 6 10.7353 1.4355 0.9732 18 6 10.1576 3.6882 0.1123 19 1 10.5426 4.3116 -0.6810 20 6 9.8277 4.2461 1.3292 21 7 10.0041 5.5336 1.5318 22 14 9.1372 3.1721 2.6927 23 1 10.2405 2.7357 3.5858 24 1 8.1422 3.9466 3.4772 25 1 8.4800 1.9800 2.0991 26 7 7.9777 0.6059 -0.0846 27 6 8.7012 -0.6632 -0.1949 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6598 2.1318 -0.0005 32 1 4.1138 2.1382 0.0001 33 1 1.6599 -2.1316 0.0009 34 1 4.4491 -2.9494 0.8993 35 1 4.4497 -2.9506 -0.8915 36 1 6.5047 -1.9305 -0.9003 37 1 6.5110 -1.9359 0.8892 38 1 11.5684 2.1672 -1.5665 39 1 10.4953 0.7477 -1.6084 40 1 9.9359 2.3058 -2.2623 41 1 10.2653 1.6139 1.9403 42 1 10.7064 0.3698 0.7463 43 1 11.7714 1.7724 1.0051 44 1 9.7723 5.9260 2.3881 45 1 8.8479 -1.0854 0.7992 46 1 8.1238 -1.3589 -0.8037 47 1 9.6705 -0.4894 -0.6625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262885587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:36 Heat of formation + Delta-G solvation = 144.292019 kcal Electronic energy + Delta-G solvation = -28626.457907 eV Core-core repulsion = 25004.891909 eV Total energy + Delta-G solvation = -3621.565997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38129 -40.46613 -37.17436 -36.08474 -34.29413 -32.78481 -31.80914 -31.45001 -29.47564 -28.17827 -27.26881 -26.77255 -26.51298 -24.99925 -23.02255 -22.60919 -21.98727 -20.71294 -20.09563 -19.20861 -17.54833 -16.64137 -16.41657 -16.15473 -15.56824 -15.47917 -14.91109 -14.77091 -14.27729 -13.91083 -13.73446 -13.59090 -13.45532 -13.43208 -12.91881 -12.88172 -12.62526 -12.51222 -12.32593 -12.16073 -12.10315 -11.88403 -11.53473 -11.51252 -11.19427 -10.90277 -10.72168 -10.50608 -10.33465 -10.21712 -10.10748 -9.61350 -9.51415 -9.26570 -9.12888 -8.73936 -8.53915 -8.28582 -6.92796 -6.07343 -4.10212 1.38094 1.48112 2.27843 2.63181 3.20216 3.33416 3.41161 3.51573 3.76332 3.87707 4.26156 4.36852 4.47246 4.60957 4.82135 4.95504 4.97724 5.01579 5.07481 5.15503 5.17914 5.28132 5.36466 5.45426 5.47502 5.52988 5.57827 5.61082 5.65725 5.83815 5.83916 5.95518 5.99653 6.03536 6.18982 6.22222 6.33268 6.38778 6.46686 6.50714 6.60210 6.61720 6.69379 6.86340 6.94268 7.07544 7.21989 7.39687 7.62229 7.81663 8.45994 8.93841 9.56267 9.69462 11.04759 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.004043 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.155948 B = 6923.929479 C = 7773.425806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.083 4.083 4 C -0.139 4.139 5 C 0.189 3.811 6 C -0.159 4.159 7 C -0.073 4.073 8 C -0.078 4.078 9 C 0.114 3.886 10 N -0.528 5.528 11 C 0.397 3.603 12 N -0.328 5.328 13 N -0.260 5.260 14 C 0.229 3.771 15 C 0.116 3.884 16 C -0.121 4.121 17 C -0.148 4.148 18 C -0.499 4.499 19 H 0.084 0.916 20 C 0.098 3.902 21 N -0.885 5.885 22 Si 0.902 3.098 23 H -0.296 1.296 24 H -0.300 1.300 25 H -0.268 1.268 26 N -0.504 5.504 27 C 0.068 3.932 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.051 0.949 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.265 0.735 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -19.876 -3.666 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.132 4.132 3 C -0.102 4.102 4 C -0.161 4.161 5 C 0.091 3.909 6 C -0.163 4.163 7 C -0.091 4.091 8 C -0.115 4.115 9 C -0.009 4.009 10 N -0.238 5.238 11 C 0.044 3.956 12 N -0.173 5.173 13 N -0.096 5.096 14 C -0.038 4.038 15 C 0.112 3.888 16 C -0.180 4.180 17 C -0.206 4.206 18 C -0.536 4.536 19 H 0.102 0.898 20 C -0.106 4.106 21 N -0.521 5.521 22 Si 0.736 3.264 23 H -0.225 1.225 24 H -0.228 1.228 25 H -0.194 1.194 26 N -0.203 5.203 27 C -0.076 4.076 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.584 -18.370 -3.422 21.986 hybrid contribution 0.311 -1.824 0.870 2.045 sum -11.272 -20.194 -2.552 23.268 Atomic orbital electron populations 1.20648 0.91259 1.02314 1.01819 1.19643 0.95781 0.92832 1.04923 1.20766 0.93019 0.97612 0.98777 1.20986 0.93803 0.97632 1.03684 1.18064 0.81093 0.94794 0.96961 1.19732 0.93654 0.93393 1.09552 1.20057 0.91257 0.97568 1.00231 1.21000 0.90729 0.96275 1.03489 1.22181 0.98407 0.78306 1.01993 1.42650 1.01269 1.03024 1.76880 1.20664 0.79503 0.89741 1.05709 1.74561 1.20513 0.97893 1.24383 1.74203 0.93088 1.24326 1.17938 1.26427 1.00102 0.77024 1.00215 1.17291 0.80302 0.98077 0.93127 1.21752 1.01554 0.97806 0.96843 1.22379 1.01846 0.97370 0.99015 1.20516 1.44401 0.88579 1.00127 0.89845 1.24865 0.93017 0.94564 0.98199 1.69863 1.46792 1.10998 1.24421 0.86825 0.77677 0.80456 0.81449 1.22476 1.22796 1.19436 1.46364 1.04741 1.09221 1.59937 1.22295 0.98656 0.83739 1.02863 0.91734 0.92050 0.91805 0.85724 0.83668 0.86247 0.89335 0.89361 0.90627 0.90789 0.91609 0.95139 0.93012 0.93991 0.94857 0.91061 0.92499 0.91114 0.90380 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.02 36.01 0.36 -0.51 16 2 C -0.13 -1.51 5.88 -104.60 -0.62 -2.12 16 3 C -0.08 -1.12 9.68 -39.71 -0.38 -1.50 16 4 C -0.14 -2.31 9.62 -39.20 -0.38 -2.69 16 5 C 0.19 3.04 6.65 -83.62 -0.56 2.49 16 6 C -0.16 -2.01 6.23 -104.26 -0.65 -2.66 16 7 C -0.07 -0.82 9.69 -39.61 -0.38 -1.20 16 8 C -0.08 -0.72 6.94 -27.24 -0.19 -0.91 16 9 C 0.11 1.27 5.74 -3.64 -0.02 1.25 16 10 N -0.53 -8.71 3.24 -114.25 -0.37 -9.08 16 11 C 0.40 8.09 8.56 -318.69 -2.73 5.37 16 12 N -0.33 -7.94 10.21 30.34 0.31 -7.63 16 13 N -0.26 -6.86 9.54 32.98 0.31 -6.55 16 14 C 0.23 5.28 3.61 -154.05 -0.56 4.73 16 15 C 0.12 2.58 0.48 -156.81 -0.08 2.51 16 16 C -0.12 -2.24 8.29 37.16 0.31 -1.93 16 17 C -0.15 -2.97 7.49 37.16 0.28 -2.69 16 18 C -0.50 -13.74 8.26 -34.44 -0.28 -14.02 16 19 H 0.08 2.47 7.99 -52.49 -0.42 2.05 16 20 C 0.10 2.87 5.23 -17.82 -0.09 2.78 16 21 N -0.88 -27.44 13.96 55.43 0.77 -26.67 16 22 Si 0.90 24.06 22.46 -169.99 -3.82 20.24 16 23 H -0.30 -7.55 7.09 56.52 0.40 -7.15 16 24 H -0.30 -8.45 7.11 56.52 0.40 -8.05 16 25 H -0.27 -6.98 4.52 56.52 0.26 -6.73 16 26 N -0.50 -9.66 3.21 -121.43 -0.39 -10.05 16 27 C 0.07 0.88 8.64 59.85 0.52 1.40 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.09 -51.92 -0.42 0.08 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.15 2.78 6.43 -52.49 -0.34 2.44 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.08 0.71 6.37 -51.93 -0.33 0.38 16 37 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.03 0.45 5.86 -51.93 -0.30 0.15 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.93 2.96 -51.93 -0.15 0.78 16 42 H 0.03 0.53 5.77 -51.93 -0.30 0.23 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.78 5.40 -51.93 -0.28 0.50 16 47 H 0.10 1.21 4.46 -51.93 -0.23 0.97 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -35.84 353.13 -10.00 -45.84 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.70 Total: -1.71 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -5.45 Total: -9.72 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.64 Total: -59.98 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -3.82 Total: 20.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.84 -10.00 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262885587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.136 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds