Wall clock time and date at job start Tue Mar 31 2020 14:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38303 * 120.08177 * 2 1 4 4 C 1.37828 * 120.22706 * 179.97438 * 3 2 1 5 5 C 1.39674 * 120.28160 * 359.95143 * 4 3 2 6 6 C 1.38613 * 119.03222 * 0.02562 * 5 4 3 7 7 C 1.38165 * 120.46531 * 0.02562 * 6 5 4 8 8 C 1.51213 * 108.54235 * 179.97438 * 6 5 4 9 9 C 1.53744 * 104.55512 * 359.74800 * 8 6 5 10 10 N 1.39663 * 129.33648 * 179.97438 * 5 4 3 11 11 C 1.38665 * 124.96033 * 0.02899 * 10 5 4 12 12 N 1.31225 * 126.47557 * 4.54359 * 11 10 5 13 13 N 1.28532 * 109.85181 * 179.74879 * 12 11 10 14 14 C 1.30315 * 110.05467 * 0.38959 * 13 12 11 15 15 C 1.50699 * 126.34199 * 179.88567 * 14 13 12 16 16 C 1.53005 * 109.46858 * 245.84883 * 15 14 13 17 17 C 1.53003 * 109.47214 * 125.85127 * 15 14 13 18 18 C 1.50701 * 109.47384 * 5.84661 * 15 14 13 19 19 H 1.07994 * 120.00307 * 245.10815 * 18 15 14 20 20 C 1.37875 * 119.99688 * 65.10835 * 18 15 14 21 21 N 1.31523 * 120.00095 * 178.79211 * 20 18 15 22 22 Si 1.86800 * 120.00190 * 359.06535 * 20 18 15 23 23 H 1.48500 * 109.47016 * 94.73781 * 22 20 18 24 24 H 1.48502 * 109.47265 * 214.73955 * 22 20 18 25 25 H 1.48505 * 109.47195 * 334.73974 * 22 20 18 26 26 N 1.36490 * 126.47783 * 184.52277 * 11 10 5 27 27 C 1.46502 * 127.12914 * 0.02562 * 26 11 10 28 28 H 1.09001 * 109.46945 * 90.00321 * 1 2 3 29 29 H 1.09001 * 109.47683 * 210.00370 * 1 2 3 30 30 H 1.09007 * 109.47104 * 330.00770 * 1 2 3 31 31 H 1.08000 * 119.88868 * 359.96919 * 3 2 1 32 32 H 1.07998 * 119.85765 * 179.97438 * 4 3 2 33 33 H 1.08011 * 119.91851 * 179.97438 * 7 6 5 34 34 H 1.08993 * 110.42028 * 118.77061 * 8 6 5 35 35 H 1.09009 * 110.41633 * 241.22713 * 8 6 5 36 36 H 1.09003 * 110.41746 * 241.39290 * 9 8 6 37 37 H 1.09006 * 110.17607 * 119.25740 * 9 8 6 38 38 H 1.08999 * 109.47013 * 174.59199 * 16 15 14 39 39 H 1.08995 * 109.46937 * 294.58866 * 16 15 14 40 40 H 1.09003 * 109.46933 * 54.59159 * 16 15 14 41 41 H 1.09002 * 109.46856 * 306.62149 * 17 15 14 42 42 H 1.08997 * 109.46931 * 66.62260 * 17 15 14 43 43 H 1.08998 * 109.46793 * 186.62715 * 17 15 14 44 44 H 0.96998 * 119.99733 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47180 * 275.84365 * 27 26 11 46 46 H 1.09000 * 109.47178 * 35.85090 * 27 26 11 47 47 H 1.09006 * 109.46655 * 155.84151 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1968 0.0000 4 6 3.5785 1.2002 0.0005 5 6 4.2859 -0.0041 0.0021 6 6 3.5815 -1.1980 0.0026 7 6 2.1999 -1.1961 0.0010 8 6 4.5719 -2.3406 0.0037 9 6 5.9494 -1.6579 -0.0028 10 7 5.6657 -0.2204 0.0024 11 6 6.6266 0.7792 0.0017 12 7 6.4089 2.0707 0.0842 13 7 7.5270 2.7042 0.0599 14 6 8.5157 1.8619 -0.0470 15 6 9.9809 2.2082 -0.1107 16 6 10.5350 1.8300 -1.4859 17 6 10.7353 1.4355 0.9732 18 6 10.1576 3.6882 0.1123 19 1 10.5426 4.3116 -0.6810 20 6 9.8277 4.2461 1.3292 21 7 10.0041 5.5336 1.5318 22 14 9.1372 3.1721 2.6927 23 1 10.2405 2.7357 3.5858 24 1 8.1422 3.9466 3.4772 25 1 8.4800 1.9800 2.0991 26 7 7.9777 0.6059 -0.0846 27 6 8.7012 -0.6632 -0.1949 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6598 2.1318 -0.0005 32 1 4.1138 2.1382 0.0001 33 1 1.6599 -2.1316 0.0009 34 1 4.4491 -2.9494 0.8993 35 1 4.4497 -2.9506 -0.8915 36 1 6.5047 -1.9305 -0.9003 37 1 6.5110 -1.9359 0.8892 38 1 11.5684 2.1672 -1.5665 39 1 10.4953 0.7477 -1.6084 40 1 9.9359 2.3058 -2.2623 41 1 10.2653 1.6139 1.9403 42 1 10.7064 0.3698 0.7463 43 1 11.7714 1.7724 1.0051 44 1 9.7723 5.9260 2.3881 45 1 8.8479 -1.0854 0.7992 46 1 8.1238 -1.3589 -0.8037 47 1 9.6705 -0.4894 -0.6625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262885587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:35 Heat of formation + Delta-G solvation = 122.936411 kcal Electronic energy + Delta-G solvation = -28627.383955 eV Core-core repulsion = 25004.891909 eV Total energy + Delta-G solvation = -3622.492046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.94669 -41.49174 -38.23246 -37.75914 -35.74118 -34.04887 -33.60686 -32.53142 -30.57481 -29.53241 -28.43494 -28.32527 -27.47997 -26.96063 -24.03896 -23.79151 -23.49831 -21.82344 -21.30880 -20.88905 -19.06002 -18.19104 -17.85271 -17.37450 -16.91453 -16.81437 -16.33613 -15.88896 -15.59766 -15.36343 -15.04559 -14.76108 -14.62183 -14.53272 -14.40023 -14.14352 -13.80557 -13.77810 -13.46895 -13.15114 -13.06059 -12.97501 -12.87007 -12.71311 -12.54403 -12.35808 -12.29284 -12.08782 -12.03045 -11.68626 -11.58635 -11.34489 -11.20090 -10.88870 -10.82168 -10.74006 -9.73242 -9.70777 -8.34250 -8.19814 -6.36098 0.32497 0.44542 0.96320 1.09916 1.14309 1.30476 1.38642 2.06054 2.11657 2.30242 2.81400 3.08040 3.40335 3.48312 3.65319 3.76819 3.99107 4.04589 4.09085 4.13777 4.20600 4.23000 4.30654 4.36500 4.40731 4.50272 4.52745 4.60634 4.69641 4.75210 4.78410 4.87040 4.90928 4.92617 4.95563 5.00148 5.02821 5.07340 5.21877 5.23961 5.39494 5.42006 5.47425 5.49883 5.63307 5.73322 5.80082 5.87481 6.20983 6.25972 6.43653 6.70826 7.33631 8.06226 8.82699 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.004043 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.155948 B = 6923.929479 C = 7773.425806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.122 4.122 3 C -0.098 4.098 4 C -0.173 4.173 5 C 0.146 3.854 6 C -0.146 4.146 7 C -0.071 4.071 8 C -0.069 4.069 9 C 0.101 3.899 10 N -0.532 5.532 11 C 0.413 3.587 12 N -0.381 5.381 13 N -0.324 5.324 14 C 0.221 3.779 15 C 0.110 3.890 16 C -0.116 4.116 17 C -0.145 4.145 18 C -0.490 4.490 19 H 0.047 0.953 20 C 0.050 3.950 21 N -0.938 5.938 22 Si 0.955 3.045 23 H -0.276 1.276 24 H -0.334 1.334 25 H -0.258 1.258 26 N -0.498 5.498 27 C 0.051 3.949 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.019 0.981 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.261 0.739 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 -26.482 -4.115 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.195 4.195 5 C 0.049 3.951 6 C -0.151 4.151 7 C -0.089 4.089 8 C -0.105 4.105 9 C -0.019 4.019 10 N -0.244 5.244 11 C 0.058 3.942 12 N -0.227 5.227 13 N -0.159 5.159 14 C -0.049 4.049 15 C 0.106 3.894 16 C -0.173 4.173 17 C -0.202 4.202 18 C -0.528 4.528 19 H 0.065 0.935 20 C -0.149 4.149 21 N -0.578 5.578 22 Si 0.789 3.211 23 H -0.203 1.203 24 H -0.265 1.265 25 H -0.183 1.183 26 N -0.197 5.197 27 C -0.090 4.090 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.177 0.823 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.131 0.869 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.653 -25.069 -3.889 28.350 hybrid contribution 0.453 0.138 0.873 0.993 sum -12.200 -24.931 -3.016 27.920 Atomic orbital electron populations 1.20723 0.88662 1.03551 1.02968 1.20080 0.97629 0.92151 1.02530 1.20922 0.92025 0.99264 0.99444 1.20914 0.95227 0.96862 1.06504 1.18420 0.81443 0.95810 0.99413 1.20213 0.94503 0.93289 1.07075 1.20547 0.90957 0.98862 0.98544 1.21156 0.88025 0.95120 1.06234 1.22663 1.00316 0.75142 1.03794 1.43074 1.00692 1.04088 1.76592 1.20856 0.80771 0.89748 1.02874 1.74434 1.20293 1.00390 1.27542 1.74070 0.94619 1.27096 1.20132 1.25997 0.99588 0.78532 1.00739 1.17354 0.80731 0.94952 0.96363 1.21701 1.01254 1.00686 0.93704 1.22288 1.01278 1.00177 0.96503 1.20847 1.41957 0.91693 0.98268 0.93475 1.25466 0.93796 0.95173 1.00478 1.69995 1.49985 1.12857 1.24930 0.86009 0.76721 0.79141 0.79190 1.20298 1.26511 1.18301 1.46357 1.04261 1.09844 1.59204 1.22843 0.99317 0.81614 1.05192 0.90482 0.89883 0.91590 0.85204 0.87888 0.82270 0.86711 0.86271 0.88337 0.89361 0.90774 0.90529 0.94932 0.96201 0.89755 0.90400 0.92961 0.88950 0.86913 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.02 71.24 0.71 -0.67 16 2 C -0.12 -2.55 5.88 -19.85 -0.12 -2.67 16 3 C -0.10 -2.70 9.68 22.19 0.21 -2.49 16 4 C -0.17 -6.09 9.62 22.52 0.22 -5.87 16 5 C 0.15 4.61 6.65 38.33 0.25 4.86 16 6 C -0.15 -3.19 6.23 -19.63 -0.12 -3.31 16 7 C -0.07 -1.30 9.69 22.25 0.22 -1.09 16 8 C -0.07 -0.89 6.94 30.26 0.21 -0.68 16 9 C 0.10 1.78 5.74 86.62 0.50 2.28 16 10 N -0.53 -16.69 3.24 -515.38 -1.67 -18.36 16 11 C 0.41 16.76 8.56 260.05 2.23 18.98 16 12 N -0.38 -19.45 10.21 -57.92 -0.59 -20.04 16 13 N -0.32 -17.89 9.54 -49.56 -0.47 -18.37 16 14 C 0.22 10.17 3.61 137.65 0.50 10.66 16 15 C 0.11 4.82 0.48 -53.67 -0.03 4.79 16 16 C -0.12 -4.04 8.29 71.98 0.60 -3.44 16 17 C -0.15 -5.39 7.49 71.98 0.54 -4.85 16 18 C -0.49 -28.06 8.26 25.60 0.21 -27.84 16 19 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 20 C 0.05 3.06 5.23 84.65 0.44 3.51 16 21 N -0.94 -61.89 13.96 21.45 0.30 -61.59 16 22 Si 0.96 51.98 22.46 68.60 1.54 53.52 16 23 H -0.28 -13.73 7.09 99.48 0.70 -13.03 16 24 H -0.33 -19.82 7.11 99.48 0.71 -19.12 16 25 H -0.26 -13.43 4.52 99.48 0.45 -12.98 16 26 N -0.50 -18.09 3.21 -538.08 -1.73 -19.82 16 27 C 0.05 1.06 8.64 127.77 1.10 2.16 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.07 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.10 4.45 6.43 -2.91 -0.02 4.43 16 33 H 0.16 1.69 8.06 -2.90 -0.02 1.67 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.10 1.26 6.37 -2.39 -0.02 1.24 16 37 H 0.09 1.31 7.96 -2.38 -0.02 1.29 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.08 1.94 5.86 -2.39 -0.01 1.93 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.02 0.83 2.96 -2.39 -0.01 0.82 16 42 H 0.08 2.25 5.77 -2.39 -0.01 2.23 16 43 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.26 16.53 8.31 -92.71 -0.77 15.76 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.11 1.58 5.40 -2.39 -0.01 1.56 16 47 H 0.11 2.05 4.46 -2.38 -0.01 2.04 16 Total: -1.00 -89.78 353.13 5.79 -83.99 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.74 Total: 6.33 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 7.67 Total: -5.67 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -4.16 Total: -138.17 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 1.54 Total: 53.52 kcal Total: -89.78 5.79 -83.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262885587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.926 kcal (2) G-P(sol) polarization free energy of solvation -89.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds