Wall clock time and date at job start Tue Mar 31 2020 15:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46956 * 2 1 4 4 C 1.38305 * 120.08633 * 90.00197 * 3 2 1 5 5 C 1.37823 * 120.23566 * 180.02562 * 4 3 2 6 6 C 1.39685 * 120.27925 * 359.97319 * 5 4 3 7 7 C 1.38601 * 119.02709 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.47443 * 359.97438 * 7 6 5 9 9 C 1.51215 * 108.54463 * 179.97438 * 7 6 5 10 10 C 1.53751 * 104.55348 * 0.02562 * 9 7 6 11 11 N 1.39655 * 129.33507 * 179.72134 * 6 5 4 12 12 C 1.38668 * 124.96408 * 359.96884 * 11 6 5 13 13 N 1.31225 * 126.47361 * 359.67921 * 12 11 6 14 14 N 1.28534 * 109.85165 * 179.85859 * 13 12 11 15 15 C 1.30313 * 110.05214 * 0.42550 * 14 13 12 16 16 C 1.50704 * 126.34057 * 179.71533 * 15 14 13 17 17 C 1.53006 * 109.46582 * 270.03607 * 16 15 14 18 18 C 1.50704 * 109.46582 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00302 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99349 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00432 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99497 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47423 * 60.00124 * 22 20 18 24 24 H 1.48502 * 109.46865 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47494 * 300.00172 * 22 20 18 26 26 N 1.36482 * 126.47928 * 180.02562 * 12 11 6 27 27 C 1.46503 * 127.13064 * 359.97139 * 26 12 11 28 28 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47313 * 299.99971 * 1 2 3 30 30 H 1.08998 * 109.47450 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.47313 * 240.00029 * 2 1 3 32 32 H 1.09006 * 109.47198 * 119.99937 * 2 1 3 33 33 H 1.08004 * 119.88249 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.86325 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.92247 * 179.97438 * 8 7 6 36 36 H 1.09000 * 110.42101 * 118.76675 * 9 7 6 37 37 H 1.09000 * 110.42466 * 241.22947 * 9 7 6 38 38 H 1.08990 * 110.30489 * 118.92774 * 10 9 7 39 39 H 1.09006 * 110.29790 * 240.97606 * 10 9 7 40 40 H 1.09000 * 109.47105 * 30.02895 * 16 15 14 41 41 H 1.08995 * 109.47360 * 150.03728 * 16 15 14 42 42 H 1.09000 * 109.46819 * 299.99463 * 17 16 15 43 43 H 1.08995 * 109.47175 * 60.00007 * 17 16 15 44 44 H 0.96997 * 120.00391 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.47171 * 90.00618 * 27 26 12 46 46 H 1.09001 * 109.47186 * 209.99908 * 27 26 12 47 47 H 1.09002 * 109.47539 * 330.00529 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2634 2.0745 1.1967 5 6 2.7223 3.3741 1.2003 6 6 2.9580 4.0411 -0.0041 7 6 2.7233 3.3770 -1.1978 8 6 2.2632 2.0741 -1.1961 9 6 3.0527 4.3109 -2.3406 10 6 3.5122 5.6096 -1.6580 11 7 3.4125 5.3438 -0.2204 12 6 3.7256 6.2524 0.7793 13 7 3.6437 6.0479 2.0729 14 7 4.0144 7.1032 2.7060 15 6 4.3434 8.0389 1.8607 16 6 4.8241 9.4250 2.2054 17 6 3.6241 10.3677 2.3171 18 6 4.1049 11.7540 2.6611 19 1 5.1605 11.9437 2.7870 20 6 3.1968 12.7802 2.8141 21 7 1.9114 12.5493 2.6603 22 14 3.7927 14.4987 3.2398 23 1 4.7064 14.9839 2.1745 24 1 2.6280 15.4136 3.3483 25 1 4.5173 14.4646 4.5356 26 7 4.1708 7.5305 0.6037 27 6 4.4136 8.2155 -0.6684 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0829 1.5650 2.1318 34 1 2.9003 3.8789 2.1383 35 1 2.0829 1.5652 -2.1316 36 1 3.8561 3.8973 -2.9502 37 1 2.1675 4.4936 -2.9498 38 1 4.5416 5.8380 -1.9336 39 1 2.8555 6.4347 -1.9341 40 1 5.3556 9.3992 3.1567 41 1 5.4949 9.7818 1.4239 42 1 3.0926 10.3935 1.3658 43 1 2.9534 10.0110 3.0986 44 1 1.2726 13.2712 2.7683 45 1 3.5032 8.7231 -0.9873 46 1 5.2116 8.9470 -0.5406 47 1 4.7066 7.4862 -1.4237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262902649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:52 Heat of formation + Delta-G solvation = 106.590835 kcal Electronic energy + Delta-G solvation = -26939.545335 eV Core-core repulsion = 23316.344491 eV Total energy + Delta-G solvation = -3623.200843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.63664 -40.62853 -37.53669 -34.96009 -34.18177 -33.24469 -33.00837 -31.56472 -29.62179 -28.89261 -28.09649 -27.38907 -25.33084 -24.24660 -23.09064 -22.48651 -21.93724 -20.92158 -20.29333 -19.78912 -17.60752 -16.78465 -16.43377 -16.33857 -15.93700 -15.49665 -15.37814 -14.77037 -14.51941 -13.93116 -13.75207 -13.66972 -13.59145 -13.42498 -13.12533 -13.01728 -12.90578 -12.70448 -12.67269 -12.27578 -12.15478 -11.95225 -11.39923 -11.34394 -11.23214 -11.09862 -10.98515 -10.78776 -10.69631 -10.56504 -10.19824 -9.93452 -9.82082 -9.66919 -9.25633 -8.84503 -8.63962 -8.42529 -7.19679 -6.06721 -4.11252 1.24749 1.35974 2.02693 2.32800 3.01101 3.29410 3.31334 3.34725 3.37080 3.69854 4.13420 4.25094 4.39601 4.50899 4.68496 4.71799 4.83118 4.88826 4.92419 5.01510 5.12355 5.16690 5.20076 5.24815 5.29015 5.32562 5.42573 5.43293 5.48636 5.49172 5.57834 5.68876 5.77103 5.84816 5.92049 6.00843 6.19375 6.29982 6.33218 6.39685 6.44185 6.58313 6.67203 6.71089 6.96514 7.12654 7.49284 7.53873 7.68015 7.90497 8.27775 8.94790 9.20243 9.53348 11.04293 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024095 B = 0.002362 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.797359 B =11853.709682 C =12241.622451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.081 4.081 5 C -0.138 4.138 6 C 0.185 3.815 7 C -0.154 4.154 8 C -0.070 4.070 9 C -0.079 4.079 10 C 0.112 3.888 11 N -0.527 5.527 12 C 0.417 3.583 13 N -0.325 5.325 14 N -0.288 5.288 15 C 0.211 3.789 16 C -0.029 4.029 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.275 1.275 26 N -0.496 5.496 27 C 0.069 3.931 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.026 0.974 44 H 0.262 0.738 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -21.803 -13.980 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.100 4.100 5 C -0.160 4.160 6 C 0.088 3.912 7 C -0.159 4.159 8 C -0.088 4.088 9 C -0.116 4.116 10 C -0.011 4.011 11 N -0.237 5.237 12 C 0.063 3.937 13 N -0.170 5.170 14 N -0.124 5.124 15 C -0.056 4.056 16 C -0.069 4.069 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.200 1.200 26 N -0.194 5.194 27 C -0.074 4.074 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.470 -22.238 -12.669 25.636 hybrid contribution 0.403 1.887 -1.136 2.239 sum 1.873 -20.352 -13.806 24.664 Atomic orbital electron populations 1.21769 0.95051 1.01370 1.02305 1.20413 0.95896 0.92553 1.02481 1.19642 1.03228 0.96617 0.92808 1.20748 0.97978 0.93617 0.97643 1.20949 1.02745 0.94896 0.97437 1.18046 0.95652 0.82641 0.94906 1.19741 1.07361 0.95369 0.93382 1.20071 0.98868 0.92210 0.97664 1.21026 1.02311 0.91989 0.96293 1.22249 1.01744 0.99198 0.77879 1.42666 1.68581 1.09399 1.03095 1.20514 1.01613 0.82014 0.89581 1.74462 1.24448 1.20144 0.97966 1.74042 1.16550 0.96531 1.25325 1.25413 1.02326 0.99365 0.78529 1.20438 1.00894 0.83630 1.01895 1.19068 0.91405 0.92472 0.97673 1.21101 0.93360 0.93310 1.48555 0.92323 1.25018 0.94836 0.99201 0.95233 1.69957 1.01013 1.32791 1.49321 0.86609 0.78149 0.83853 0.79101 1.20228 1.21287 1.20049 1.46005 1.53734 1.10534 1.09148 1.22273 1.04201 0.98311 0.82657 0.92700 0.92482 0.92670 0.91415 0.91219 0.85715 0.83769 0.86149 0.89182 0.89108 0.90424 0.90305 0.89187 0.91296 0.96856 0.95592 0.92788 0.89966 0.88410 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.08 -0.57 6.07 -27.89 -0.17 -0.74 16 3 C -0.12 -1.22 5.14 -104.60 -0.54 -1.75 16 4 C -0.08 -0.94 9.68 -39.71 -0.38 -1.33 16 5 C -0.14 -1.99 9.62 -39.19 -0.38 -2.37 16 6 C 0.19 2.61 6.65 -83.62 -0.56 2.06 16 7 C -0.15 -1.71 6.23 -104.26 -0.65 -2.36 16 8 C -0.07 -0.68 9.70 -39.61 -0.38 -1.07 16 9 C -0.08 -0.63 6.94 -27.24 -0.19 -0.82 16 10 C 0.11 1.08 5.56 -3.63 -0.02 1.06 16 11 N -0.53 -7.61 3.24 -114.25 -0.37 -7.98 16 12 C 0.42 7.44 8.57 -318.70 -2.73 4.71 16 13 N -0.33 -6.74 10.19 30.34 0.31 -6.43 16 14 N -0.29 -6.39 12.18 32.99 0.40 -5.99 16 15 C 0.21 4.26 7.32 -154.05 -1.13 3.14 16 16 C -0.03 -0.58 5.53 -27.88 -0.15 -0.74 16 17 C 0.03 0.81 4.96 -27.88 -0.14 0.68 16 18 C -0.53 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.54 13.28 55.43 0.74 -25.81 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 N -0.50 -8.46 3.21 -121.42 -0.39 -8.85 16 27 C 0.07 0.82 10.10 59.85 0.60 1.42 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.14 2.37 6.42 -52.49 -0.34 2.03 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.61 6.67 -51.93 -0.35 0.27 16 39 H 0.08 0.70 7.74 -51.93 -0.40 0.29 16 40 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 41 H 0.07 1.23 7.27 -51.93 -0.38 0.85 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.10 1.08 7.25 -51.93 -0.38 0.70 16 47 H 0.08 0.73 4.99 -51.93 -0.26 0.47 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -34.29 381.43 -12.57 -46.87 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.13 Total: -1.84 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -6.86 Total: -11.83 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.69 Total: -55.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.29 -12.57 -46.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.456 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds