Wall clock time and date at job start Tue Mar 31 2020 15:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46956 * 2 1 4 4 C 1.38305 * 120.08633 * 90.00197 * 3 2 1 5 5 C 1.37823 * 120.23566 * 180.02562 * 4 3 2 6 6 C 1.39685 * 120.27925 * 359.97319 * 5 4 3 7 7 C 1.38601 * 119.02709 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.47443 * 359.97438 * 7 6 5 9 9 C 1.51215 * 108.54463 * 179.97438 * 7 6 5 10 10 C 1.53751 * 104.55348 * 0.02562 * 9 7 6 11 11 N 1.39655 * 129.33507 * 179.72134 * 6 5 4 12 12 C 1.38668 * 124.96408 * 359.96884 * 11 6 5 13 13 N 1.31225 * 126.47361 * 359.67921 * 12 11 6 14 14 N 1.28534 * 109.85165 * 179.85859 * 13 12 11 15 15 C 1.30313 * 110.05214 * 0.42550 * 14 13 12 16 16 C 1.50704 * 126.34057 * 179.71533 * 15 14 13 17 17 C 1.53006 * 109.46582 * 270.03607 * 16 15 14 18 18 C 1.50704 * 109.46582 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00302 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99349 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00432 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99497 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47423 * 60.00124 * 22 20 18 24 24 H 1.48502 * 109.46865 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47494 * 300.00172 * 22 20 18 26 26 N 1.36482 * 126.47928 * 180.02562 * 12 11 6 27 27 C 1.46503 * 127.13064 * 359.97139 * 26 12 11 28 28 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47313 * 299.99971 * 1 2 3 30 30 H 1.08998 * 109.47450 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.47313 * 240.00029 * 2 1 3 32 32 H 1.09006 * 109.47198 * 119.99937 * 2 1 3 33 33 H 1.08004 * 119.88249 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.86325 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.92247 * 179.97438 * 8 7 6 36 36 H 1.09000 * 110.42101 * 118.76675 * 9 7 6 37 37 H 1.09000 * 110.42466 * 241.22947 * 9 7 6 38 38 H 1.08990 * 110.30489 * 118.92774 * 10 9 7 39 39 H 1.09006 * 110.29790 * 240.97606 * 10 9 7 40 40 H 1.09000 * 109.47105 * 30.02895 * 16 15 14 41 41 H 1.08995 * 109.47360 * 150.03728 * 16 15 14 42 42 H 1.09000 * 109.46819 * 299.99463 * 17 16 15 43 43 H 1.08995 * 109.47175 * 60.00007 * 17 16 15 44 44 H 0.96997 * 120.00391 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.47171 * 90.00618 * 27 26 12 46 46 H 1.09001 * 109.47186 * 209.99908 * 27 26 12 47 47 H 1.09002 * 109.47539 * 330.00529 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2634 2.0745 1.1967 5 6 2.7223 3.3741 1.2003 6 6 2.9580 4.0411 -0.0041 7 6 2.7233 3.3770 -1.1978 8 6 2.2632 2.0741 -1.1961 9 6 3.0527 4.3109 -2.3406 10 6 3.5122 5.6096 -1.6580 11 7 3.4125 5.3438 -0.2204 12 6 3.7256 6.2524 0.7793 13 7 3.6437 6.0479 2.0729 14 7 4.0144 7.1032 2.7060 15 6 4.3434 8.0389 1.8607 16 6 4.8241 9.4250 2.2054 17 6 3.6241 10.3677 2.3171 18 6 4.1049 11.7540 2.6611 19 1 5.1605 11.9437 2.7870 20 6 3.1968 12.7802 2.8141 21 7 1.9114 12.5493 2.6603 22 14 3.7927 14.4987 3.2398 23 1 4.7064 14.9839 2.1745 24 1 2.6280 15.4136 3.3483 25 1 4.5173 14.4646 4.5356 26 7 4.1708 7.5305 0.6037 27 6 4.4136 8.2155 -0.6684 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0829 1.5650 2.1318 34 1 2.9003 3.8789 2.1383 35 1 2.0829 1.5652 -2.1316 36 1 3.8561 3.8973 -2.9502 37 1 2.1675 4.4936 -2.9498 38 1 4.5416 5.8380 -1.9336 39 1 2.8555 6.4347 -1.9341 40 1 5.3556 9.3992 3.1567 41 1 5.4949 9.7818 1.4239 42 1 3.0926 10.3935 1.3658 43 1 2.9534 10.0110 3.0986 44 1 1.2726 13.2712 2.7683 45 1 3.5032 8.7231 -0.9873 46 1 5.2116 8.9470 -0.5406 47 1 4.7066 7.4862 -1.4237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262902649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:51 Heat of formation + Delta-G solvation = 91.131133 kcal Electronic energy + Delta-G solvation = -26940.215718 eV Core-core repulsion = 23316.344491 eV Total energy + Delta-G solvation = -3623.871226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.03870 -41.53653 -38.41213 -36.45036 -35.76919 -34.41919 -33.93728 -33.20503 -30.73816 -29.85462 -29.33967 -28.46106 -27.18620 -25.04164 -24.08462 -23.78401 -23.29934 -22.04130 -21.52135 -20.92936 -18.80413 -18.48896 -17.80707 -17.51784 -17.00348 -16.60637 -16.36575 -16.17507 -15.65569 -15.28598 -14.94588 -14.63878 -14.57033 -14.43383 -14.29821 -14.24763 -13.96683 -13.78680 -13.54367 -13.48201 -13.19266 -12.84084 -12.83683 -12.70480 -12.67533 -12.50035 -12.03336 -12.01967 -11.86045 -11.81542 -11.59281 -11.53441 -11.36683 -11.25682 -11.01395 -10.57577 -9.93334 -9.70908 -8.30428 -8.20132 -6.33836 0.27501 0.45481 0.83025 1.00960 1.42677 1.46372 1.53832 1.83432 1.92376 2.41678 2.81162 3.13090 3.32798 3.41512 3.55576 3.63668 3.89507 3.94851 4.01023 4.09809 4.12003 4.20761 4.27096 4.37988 4.45823 4.53116 4.53781 4.62493 4.65911 4.69274 4.72445 4.83808 4.87385 4.91442 4.93869 5.02701 5.12510 5.16071 5.18182 5.37194 5.42895 5.44346 5.48021 5.57772 5.64392 5.73641 5.77274 5.79673 6.14415 6.17268 6.31087 6.82239 7.36344 7.73597 8.90941 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024095 B = 0.002362 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.797359 B =11853.709682 C =12241.622451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.092 4.092 5 C -0.167 4.167 6 C 0.144 3.856 7 C -0.145 4.145 8 C -0.069 4.069 9 C -0.070 4.070 10 C 0.098 3.902 11 N -0.530 5.530 12 C 0.427 3.573 13 N -0.367 5.367 14 N -0.327 5.327 15 C 0.195 3.805 16 C -0.011 4.011 17 C 0.043 3.957 18 C -0.539 4.539 19 H 0.074 0.926 20 C -0.001 4.001 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.288 1.288 25 H -0.268 1.268 26 N -0.493 5.493 27 C 0.058 3.942 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.100 0.900 42 H -0.006 1.006 43 H -0.021 1.021 44 H 0.263 0.737 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 -22.707 -17.508 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.189 4.189 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.087 4.087 9 C -0.107 4.107 10 C -0.022 4.022 11 N -0.242 5.242 12 C 0.072 3.928 13 N -0.213 5.213 14 N -0.164 5.164 15 C -0.074 4.074 16 C -0.051 4.051 17 C 0.005 3.995 18 C -0.577 4.577 19 H 0.093 0.907 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.794 3.206 23 H -0.183 1.183 24 H -0.214 1.214 25 H -0.193 1.193 26 N -0.191 5.191 27 C -0.083 4.083 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.174 0.826 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.013 0.987 43 H -0.002 1.002 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.568 -23.172 -16.245 28.415 hybrid contribution -0.021 1.973 -0.104 1.976 sum 2.548 -21.199 -16.349 26.892 Atomic orbital electron populations 1.21759 0.94681 1.02265 1.01689 1.20481 0.96060 0.90817 1.03784 1.20019 1.01501 0.97786 0.92236 1.20900 0.98186 0.92825 0.99153 1.20912 1.04972 0.96308 0.96758 1.18402 0.97780 0.83084 0.95969 1.20175 1.05599 0.95837 0.93299 1.20505 0.97532 0.91771 0.98875 1.21162 1.04243 0.90023 0.95276 1.22691 1.03530 1.00782 0.75179 1.43085 1.68151 1.08955 1.04010 1.20777 0.99631 0.82690 0.89747 1.74366 1.26757 1.20230 0.99929 1.73912 1.17586 0.97650 1.27287 1.25204 1.03252 0.99048 0.79896 1.20146 0.98971 0.82889 1.03101 1.18832 0.92417 0.93363 0.94881 1.21569 0.94205 0.93977 1.47906 0.90745 1.26031 0.94839 1.04006 0.95020 1.70119 1.02532 1.34216 1.50737 0.85427 0.77716 0.78076 0.79385 1.18338 1.21395 1.19295 1.46128 1.53092 1.10212 1.09636 1.22690 1.04778 0.99490 0.81306 0.91086 0.93835 0.92583 0.89337 0.90754 0.84964 0.87214 0.82640 0.86204 0.86865 0.88201 0.89404 0.89325 0.88147 0.98748 1.00243 0.92810 0.89880 0.87228 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 71.98 0.71 -1.03 16 2 C -0.07 -0.91 6.07 29.85 0.18 -0.73 16 3 C -0.11 -2.09 5.14 -19.85 -0.10 -2.19 16 4 C -0.09 -2.20 9.68 22.19 0.21 -1.98 16 5 C -0.17 -5.16 9.62 22.52 0.22 -4.95 16 6 C 0.14 4.09 6.65 38.33 0.25 4.34 16 7 C -0.14 -2.86 6.23 -19.63 -0.12 -2.99 16 8 C -0.07 -1.13 9.70 22.25 0.22 -0.91 16 9 C -0.07 -0.84 6.94 30.26 0.21 -0.63 16 10 C 0.10 1.63 5.56 86.62 0.48 2.11 16 11 N -0.53 -15.17 3.24 -515.37 -1.67 -16.84 16 12 C 0.43 15.77 8.57 260.05 2.23 18.00 16 13 N -0.37 -16.38 10.19 -57.93 -0.59 -16.97 16 14 N -0.33 -15.57 12.18 -49.55 -0.60 -16.17 16 15 C 0.20 8.22 7.32 137.65 1.01 9.22 16 16 C -0.01 -0.48 5.53 29.85 0.16 -0.31 16 17 C 0.04 2.30 4.96 29.85 0.15 2.45 16 18 C -0.54 -29.64 9.11 25.60 0.23 -29.40 16 19 H 0.07 3.78 7.74 -2.92 -0.02 3.75 16 20 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 21 N -0.94 -57.26 13.28 21.45 0.28 -56.98 16 22 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 N -0.49 -16.98 3.21 -538.07 -1.73 -18.70 16 27 C 0.06 1.30 10.10 127.77 1.29 2.59 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 33 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.11 4.09 6.42 -2.91 -0.02 4.07 16 35 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.19 6.67 -2.39 -0.02 1.17 16 39 H 0.09 1.30 7.74 -2.38 -0.02 1.28 16 40 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 41 H 0.10 3.48 7.27 -2.39 -0.02 3.47 16 42 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 46 H 0.11 2.19 7.25 -2.39 -0.02 2.18 16 47 H 0.12 1.73 4.99 -2.39 -0.01 1.72 16 Total: -1.00 -80.64 381.43 6.48 -74.16 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.97 Total: 12.18 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 7.80 Total: -6.02 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -4.31 Total: -125.66 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -80.64 6.48 -74.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.290 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds