Wall clock time and date at job start Tue Mar 31 2020 14:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81405 * 103.00181 * 2 1 4 4 C 1.52998 * 109.47531 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47402 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.47557 * 179.97438 * 5 4 3 7 7 C 1.48731 * 110.99780 * 60.85095 * 6 5 4 8 8 C 1.55003 * 103.35051 * 158.82097 * 7 6 5 9 9 C 1.54795 * 102.94595 * 323.04408 * 8 7 6 10 10 C 1.47082 * 111.00509 * 178.00719 * 6 5 4 11 11 C 1.53875 * 110.67869 * 336.03672 * 10 6 5 12 12 C 1.54801 * 101.51261 * 96.03794 * 11 10 6 13 13 N 1.46854 * 105.42765 * 25.05889 * 12 11 10 14 14 C 1.46499 * 124.36783 * 163.05589 * 13 12 11 15 15 C 1.53001 * 109.46983 * 269.69371 * 14 13 12 16 16 C 1.50697 * 109.47158 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99987 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00122 * 179.72578 * 16 15 14 19 19 N 1.31515 * 120.00238 * 0.27399 * 18 16 15 20 20 Si 1.86802 * 120.00074 * 180.27975 * 18 16 15 21 21 H 1.48496 * 109.47342 * 89.99955 * 20 18 16 22 22 H 1.48498 * 109.46989 * 210.00202 * 20 18 16 23 23 H 1.48500 * 109.46837 * 329.99824 * 20 18 16 24 24 C 1.34671 * 111.25867 * 342.78672 * 13 12 11 25 25 O 1.21287 * 125.07443 * 181.05908 * 24 13 12 26 26 H 1.09004 * 109.46965 * 299.99513 * 1 2 3 27 27 H 1.09001 * 109.47109 * 59.99438 * 1 2 3 28 28 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46756 * 60.00206 * 3 2 1 30 30 H 1.08996 * 109.46939 * 300.00568 * 3 2 1 31 31 H 1.08997 * 109.46861 * 59.99934 * 4 3 2 32 32 H 1.09003 * 109.46887 * 300.00612 * 4 3 2 33 33 H 1.09004 * 109.46930 * 60.00103 * 5 4 3 34 34 H 1.09003 * 109.47490 * 300.00109 * 5 4 3 35 35 H 1.09001 * 110.64465 * 40.35802 * 7 6 5 36 36 H 1.08997 * 110.78651 * 277.35261 * 7 6 5 37 37 H 1.09010 * 110.71804 * 204.68177 * 8 7 6 38 38 H 1.08993 * 110.87249 * 81.48642 * 8 7 6 39 39 H 1.08994 * 110.37464 * 263.05778 * 9 8 7 40 40 H 1.09005 * 110.46486 * 140.77000 * 9 8 7 41 41 H 1.08998 * 111.00238 * 214.29842 * 11 10 6 42 42 H 1.08997 * 111.00410 * 338.15255 * 11 10 6 43 43 H 1.08993 * 110.37510 * 266.02248 * 12 11 10 44 44 H 1.09004 * 110.18249 * 143.98672 * 12 11 10 45 45 H 1.09002 * 109.46906 * 149.69953 * 14 13 12 46 46 H 1.08994 * 109.47300 * 29.69591 * 14 13 12 47 47 H 1.09002 * 109.46825 * 60.00532 * 15 14 13 48 48 H 1.08994 * 109.47282 * 300.00231 * 15 14 13 49 49 H 0.96997 * 120.00384 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0865 3.4308 0.0000 6 7 5.5460 3.5964 0.0000 7 6 6.1518 2.9850 -1.2130 8 6 7.5208 3.7026 -1.3299 9 6 7.1942 5.1477 -0.8813 10 6 5.9151 5.0194 -0.0471 11 6 4.7803 5.8549 -0.6651 12 6 4.0413 6.3556 0.5996 13 7 5.0462 6.3418 1.6704 14 6 4.9098 7.0567 2.9418 15 6 5.5053 8.4594 2.8045 16 6 5.3645 9.1951 4.1122 17 1 4.8973 8.7106 4.9568 18 6 5.8375 10.4846 4.2321 19 7 6.4069 11.0745 3.2038 20 14 5.6699 11.3938 5.8553 21 1 6.8709 11.1401 6.6911 22 1 5.5460 12.8507 5.5961 23 1 4.4596 10.9133 6.5690 24 6 6.1066 5.5823 1.3352 25 8 7.0719 5.3824 2.0418 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8031 2.2371 0.8901 30 1 1.8031 2.2371 -0.8899 31 1 4.1608 1.4705 -0.8908 32 1 4.1616 1.4702 0.8891 33 1 3.6680 3.8999 0.8905 34 1 3.6671 3.9009 -0.8895 35 1 5.5375 3.1839 -2.0912 36 1 6.2905 1.9125 -1.0774 37 1 7.8762 3.6897 -2.3603 38 1 8.2551 3.2488 -0.6645 39 1 7.0192 5.7839 -1.7488 40 1 8.0047 5.5504 -0.2736 41 1 5.1792 6.6878 -1.2442 42 1 4.1262 5.2336 -1.2767 43 1 3.2171 5.6867 0.8473 44 1 3.6715 7.3689 0.4427 45 1 5.4394 6.5121 3.7235 46 1 3.8546 7.1341 3.2038 47 1 4.9758 9.0040 2.0228 48 1 6.5605 8.3821 2.5426 49 1 6.7394 11.9818 3.2880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272459133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:45 Heat of formation + Delta-G solvation = -26.136960 kcal Electronic energy + Delta-G solvation = -26548.955392 eV Core-core repulsion = 23023.150239 eV Total energy + Delta-G solvation = -3525.805152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25377 -38.00251 -35.89281 -34.88441 -33.57981 -31.85787 -31.07660 -29.32936 -29.09742 -27.87478 -25.92375 -24.97502 -23.67690 -22.42974 -21.87330 -20.68382 -19.99323 -18.52993 -17.03422 -16.66126 -16.45568 -15.92308 -15.82301 -15.33547 -15.05586 -14.53812 -14.42104 -14.30346 -14.04079 -13.90922 -13.69368 -13.51342 -13.00669 -12.90737 -12.81936 -12.64690 -12.46667 -12.39722 -12.08983 -11.65444 -11.58143 -11.47342 -11.34182 -11.24294 -11.03168 -10.93907 -10.70731 -10.64042 -10.53629 -10.33113 -10.00083 -9.86705 -9.49333 -9.18000 -8.41914 -8.37005 -8.04026 -7.98761 -6.02752 -4.06171 1.29635 2.23138 2.92897 3.31740 3.37223 3.39488 3.49673 3.92457 4.30409 4.39485 4.45217 4.50205 4.57189 4.70491 4.73783 4.74637 4.80454 4.85475 4.93523 5.04889 5.06763 5.19457 5.22045 5.30978 5.33448 5.35265 5.40729 5.53908 5.61304 5.71840 5.77631 5.79653 5.80917 5.92060 5.94792 6.02409 6.07265 6.21713 6.48125 6.70122 6.80348 6.82322 7.05056 7.52113 7.67327 7.86307 7.97332 8.33755 8.74808 9.00681 9.57926 11.08675 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.002807 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.314726 B = 9971.859590 C =11363.361841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.266 6.266 3 C -0.082 4.082 4 C -0.101 4.101 5 C 0.039 3.961 6 N -0.488 5.488 7 C 0.035 3.965 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.066 3.934 11 C -0.165 4.165 12 C 0.102 3.898 13 N -0.612 5.612 14 C 0.129 3.871 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.537 3.463 25 O -0.519 6.519 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.016 0.984 48 H 0.021 0.979 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.855 -19.195 -14.340 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.040 6.040 3 C -0.231 4.231 4 C -0.139 4.139 5 C -0.090 4.090 6 N -0.213 5.213 7 C -0.092 4.092 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.028 4.028 11 C -0.204 4.204 12 C -0.022 4.022 13 N -0.345 5.345 14 C 0.009 3.991 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.322 3.678 25 O -0.393 6.393 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.035 0.965 48 H 0.039 0.961 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.435 -20.216 -13.426 25.692 hybrid contribution -1.447 2.149 0.137 2.594 sum -9.881 -18.066 -13.289 24.508 Atomic orbital electron populations 1.23375 0.94219 1.06490 1.04955 1.86968 1.07299 1.11648 1.98084 1.23359 1.00555 0.94075 1.05075 1.21310 0.91971 0.96448 1.04202 1.22611 0.88605 0.95818 1.02005 1.64520 1.09411 1.09025 1.38299 1.23321 0.95147 0.99868 0.90857 1.22522 0.97081 0.94930 1.01368 1.22305 0.96209 0.97738 0.98901 1.21942 0.96417 0.89051 0.95365 1.23372 0.98336 1.00741 0.97910 1.22108 0.91487 1.02146 0.86436 1.48561 1.18981 1.48790 1.18208 1.21787 1.00665 0.94929 0.81702 1.19401 0.96710 0.89070 0.97380 1.21090 1.39099 0.98600 0.97273 0.92481 1.25001 0.95058 0.97601 0.96616 1.69972 1.39558 1.13657 1.30008 0.86552 0.78572 0.78808 0.83825 1.20547 1.21215 1.19815 1.20000 0.82415 0.78143 0.87234 1.90675 1.31276 1.60890 1.56455 0.90410 0.90541 0.88128 0.89786 0.90097 0.90852 0.89947 0.89849 0.93097 0.93483 0.89638 0.90856 0.90325 0.90625 0.89662 0.89216 0.88753 0.91707 0.90106 0.91095 0.91743 0.96537 0.96100 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.76 101.05 1.09 0.38 16 2 S -0.27 -2.31 22.38 -107.50 -2.41 -4.72 16 3 C -0.08 -0.62 5.94 37.16 0.22 -0.40 16 4 C -0.10 -0.87 5.10 -26.74 -0.14 -1.01 16 5 C 0.04 0.38 3.67 -3.83 -0.01 0.37 16 6 N -0.49 -5.95 5.02 -216.78 -1.09 -7.04 16 7 C 0.04 0.34 5.44 -1.75 -0.01 0.33 16 8 C -0.12 -1.25 7.07 -24.73 -0.17 -1.42 16 9 C -0.11 -1.44 6.19 -25.66 -0.16 -1.60 16 10 C 0.07 0.91 0.80 -132.18 -0.11 0.80 16 11 C -0.16 -1.86 5.69 -25.33 -0.14 -2.01 16 12 C 0.10 1.37 6.66 -2.90 -0.02 1.35 16 13 N -0.61 -11.26 2.94 -172.41 -0.51 -11.77 16 14 C 0.13 2.77 5.88 -4.04 -0.02 2.75 16 15 C 0.01 0.32 5.30 -27.88 -0.15 0.18 16 16 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.54 10.34 7.05 -11.14 -0.08 10.26 16 25 O -0.52 -12.27 17.13 5.55 0.10 -12.17 16 26 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.10 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.61 6.98 -51.93 -0.36 0.25 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 34 H 0.05 0.41 5.44 -51.93 -0.28 0.13 16 35 H 0.05 0.38 7.98 -51.93 -0.41 -0.03 16 36 H 0.09 0.77 7.71 -51.93 -0.40 0.36 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.81 7.38 -51.93 -0.38 0.43 16 40 H 0.08 1.31 7.43 -51.93 -0.39 0.93 16 41 H 0.09 0.99 7.55 -51.93 -0.39 0.60 16 42 H 0.09 0.81 5.29 -51.93 -0.27 0.54 16 43 H 0.06 0.73 6.40 -51.93 -0.33 0.39 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 1.62 7.93 -51.93 -0.41 1.21 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -34.12 391.75 -10.98 -45.10 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -8.57 Total: -2.12 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.12 Total: -3.61 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.86 Total: -45.17 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.10 Total: -12.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.41 Total: -4.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.12 -10.98 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.958 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds