Wall clock time and date at job start Tue Mar 31 2020 14:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81405 * 103.00181 * 2 1 4 4 C 1.52998 * 109.47531 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47402 * 180.02562 * 4 3 2 6 6 N 1.46894 * 109.47557 * 179.97438 * 5 4 3 7 7 C 1.48731 * 110.99780 * 60.85095 * 6 5 4 8 8 C 1.55003 * 103.35051 * 158.82097 * 7 6 5 9 9 C 1.54795 * 102.94595 * 323.04408 * 8 7 6 10 10 C 1.47082 * 111.00509 * 178.00719 * 6 5 4 11 11 C 1.53875 * 110.67869 * 336.03672 * 10 6 5 12 12 C 1.54801 * 101.51261 * 96.03794 * 11 10 6 13 13 N 1.46854 * 105.42765 * 25.05889 * 12 11 10 14 14 C 1.46499 * 124.36783 * 163.05589 * 13 12 11 15 15 C 1.53001 * 109.46983 * 269.69371 * 14 13 12 16 16 C 1.50697 * 109.47158 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99987 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00122 * 179.72578 * 16 15 14 19 19 N 1.31515 * 120.00238 * 0.27399 * 18 16 15 20 20 Si 1.86802 * 120.00074 * 180.27975 * 18 16 15 21 21 H 1.48496 * 109.47342 * 89.99955 * 20 18 16 22 22 H 1.48498 * 109.46989 * 210.00202 * 20 18 16 23 23 H 1.48500 * 109.46837 * 329.99824 * 20 18 16 24 24 C 1.34671 * 111.25867 * 342.78672 * 13 12 11 25 25 O 1.21287 * 125.07443 * 181.05908 * 24 13 12 26 26 H 1.09004 * 109.46965 * 299.99513 * 1 2 3 27 27 H 1.09001 * 109.47109 * 59.99438 * 1 2 3 28 28 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46756 * 60.00206 * 3 2 1 30 30 H 1.08996 * 109.46939 * 300.00568 * 3 2 1 31 31 H 1.08997 * 109.46861 * 59.99934 * 4 3 2 32 32 H 1.09003 * 109.46887 * 300.00612 * 4 3 2 33 33 H 1.09004 * 109.46930 * 60.00103 * 5 4 3 34 34 H 1.09003 * 109.47490 * 300.00109 * 5 4 3 35 35 H 1.09001 * 110.64465 * 40.35802 * 7 6 5 36 36 H 1.08997 * 110.78651 * 277.35261 * 7 6 5 37 37 H 1.09010 * 110.71804 * 204.68177 * 8 7 6 38 38 H 1.08993 * 110.87249 * 81.48642 * 8 7 6 39 39 H 1.08994 * 110.37464 * 263.05778 * 9 8 7 40 40 H 1.09005 * 110.46486 * 140.77000 * 9 8 7 41 41 H 1.08998 * 111.00238 * 214.29842 * 11 10 6 42 42 H 1.08997 * 111.00410 * 338.15255 * 11 10 6 43 43 H 1.08993 * 110.37510 * 266.02248 * 12 11 10 44 44 H 1.09004 * 110.18249 * 143.98672 * 12 11 10 45 45 H 1.09002 * 109.46906 * 149.69953 * 14 13 12 46 46 H 1.08994 * 109.47300 * 29.69591 * 14 13 12 47 47 H 1.09002 * 109.46825 * 60.00532 * 15 14 13 48 48 H 1.08994 * 109.47282 * 300.00231 * 15 14 13 49 49 H 0.96997 * 120.00384 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0865 3.4308 0.0000 6 7 5.5460 3.5964 0.0000 7 6 6.1518 2.9850 -1.2130 8 6 7.5208 3.7026 -1.3299 9 6 7.1942 5.1477 -0.8813 10 6 5.9151 5.0194 -0.0471 11 6 4.7803 5.8549 -0.6651 12 6 4.0413 6.3556 0.5996 13 7 5.0462 6.3418 1.6704 14 6 4.9098 7.0567 2.9418 15 6 5.5053 8.4594 2.8045 16 6 5.3645 9.1951 4.1122 17 1 4.8973 8.7106 4.9568 18 6 5.8375 10.4846 4.2321 19 7 6.4069 11.0745 3.2038 20 14 5.6699 11.3938 5.8553 21 1 6.8709 11.1401 6.6911 22 1 5.5460 12.8507 5.5961 23 1 4.4596 10.9133 6.5690 24 6 6.1066 5.5823 1.3352 25 8 7.0719 5.3824 2.0418 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8031 2.2371 0.8901 30 1 1.8031 2.2371 -0.8899 31 1 4.1608 1.4705 -0.8908 32 1 4.1616 1.4702 0.8891 33 1 3.6680 3.8999 0.8905 34 1 3.6671 3.9009 -0.8895 35 1 5.5375 3.1839 -2.0912 36 1 6.2905 1.9125 -1.0774 37 1 7.8762 3.6897 -2.3603 38 1 8.2551 3.2488 -0.6645 39 1 7.0192 5.7839 -1.7488 40 1 8.0047 5.5504 -0.2736 41 1 5.1792 6.6878 -1.2442 42 1 4.1262 5.2336 -1.2767 43 1 3.2171 5.6867 0.8473 44 1 3.6715 7.3689 0.4427 45 1 5.4394 6.5121 3.7235 46 1 3.8546 7.1341 3.2038 47 1 4.9758 9.0040 2.0228 48 1 6.5605 8.3821 2.5426 49 1 6.7394 11.9818 3.2880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272459133.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:44 Heat of formation + Delta-G solvation = -48.557700 kcal Electronic energy + Delta-G solvation = -26549.927628 eV Core-core repulsion = 23023.150239 eV Total energy + Delta-G solvation = -3526.777388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39657 -39.25338 -37.41205 -35.71972 -35.48187 -33.49491 -31.91773 -30.75483 -29.77006 -28.98034 -27.08659 -26.49135 -24.74132 -23.63738 -23.19268 -21.89581 -21.02971 -19.85213 -18.70396 -18.05582 -17.35816 -17.12442 -16.65774 -16.60393 -16.40897 -16.07220 -15.66674 -15.24381 -14.92354 -14.74836 -14.59994 -14.49491 -14.35952 -14.17755 -13.95109 -13.88673 -13.58332 -13.50836 -13.34578 -13.07315 -12.89060 -12.58194 -12.41425 -12.33688 -12.22304 -12.17349 -12.00876 -11.91053 -11.82210 -11.59034 -11.44011 -11.36130 -10.91651 -10.82587 -10.62096 -9.58364 -9.32161 -8.67812 -8.25632 -6.38586 0.74477 1.37511 1.40316 1.50710 1.54987 1.70671 2.08320 2.39770 2.94585 3.07785 3.28119 3.36428 3.66474 3.82975 3.89572 3.95710 4.04787 4.14205 4.22383 4.27334 4.30590 4.34076 4.35679 4.38073 4.50886 4.56326 4.60343 4.65195 4.66049 4.69638 4.83406 4.88630 4.90874 4.92497 4.96742 5.04872 5.08102 5.18950 5.21997 5.26769 5.31269 5.43452 5.57560 5.78723 5.84346 6.04737 6.14026 6.30229 6.76490 7.24721 7.31408 8.86565 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.002807 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.314726 B = 9971.859590 C =11363.361841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.322 6.322 3 C -0.069 4.069 4 C -0.091 4.091 5 C 0.042 3.958 6 N -0.514 5.514 7 C 0.041 3.959 8 C -0.116 4.116 9 C -0.118 4.118 10 C 0.074 3.926 11 C -0.151 4.151 12 C 0.093 3.907 13 N -0.619 5.619 14 C 0.143 3.857 15 C 0.026 3.974 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.970 3.030 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.257 1.257 24 C 0.518 3.482 25 O -0.581 6.581 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.003 0.997 48 H -0.029 1.029 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 -19.789 -16.033 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.097 6.097 3 C -0.217 4.217 4 C -0.130 4.130 5 C -0.087 4.087 6 N -0.239 5.239 7 C -0.085 4.085 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.019 4.019 11 C -0.189 4.189 12 C -0.028 4.028 13 N -0.351 5.351 14 C 0.022 3.978 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.794 3.206 21 H -0.203 1.203 22 H -0.203 1.203 23 H -0.181 1.181 24 C 0.306 3.694 25 O -0.460 6.460 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.153 0.847 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.021 0.979 48 H -0.011 1.011 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.230 -20.829 -15.156 28.101 hybrid contribution -0.573 2.306 0.673 2.469 sum -11.803 -18.524 -14.483 26.309 Atomic orbital electron populations 1.23408 0.91202 1.07324 1.05841 1.87173 1.10757 1.13521 1.98225 1.23288 0.99585 0.92823 1.06039 1.21190 0.92818 0.95584 1.03389 1.22629 0.87105 0.96461 1.02523 1.64403 1.11292 1.07787 1.40461 1.23382 0.94577 0.99849 0.90733 1.22528 0.97447 0.92972 1.02492 1.22358 0.94547 0.99819 0.98919 1.21762 0.98062 0.90515 0.91584 1.23421 0.97483 1.00905 0.97084 1.22486 0.91260 1.03234 0.85846 1.48674 1.20317 1.47811 1.18289 1.21337 1.01222 0.92040 0.83245 1.19194 0.93716 0.91931 0.96396 1.21541 1.39356 0.99281 0.98215 0.91621 1.26019 0.94377 0.98628 1.00724 1.70110 1.40360 1.14193 1.32515 0.85374 0.79047 0.77465 0.78724 1.20295 1.20327 1.18076 1.21181 0.81379 0.77699 0.89175 1.90617 1.33554 1.63011 1.58814 0.89907 0.89209 0.87386 0.89799 0.88036 0.90058 0.92441 0.91309 0.90259 0.90496 0.88948 0.87839 0.92410 0.88075 0.93741 0.88726 0.84682 0.88595 0.90094 0.93374 0.89085 0.97887 1.01052 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.76 113.37 1.22 0.20 16 2 S -0.32 -5.09 22.38 -56.49 -1.26 -6.36 16 3 C -0.07 -0.86 5.94 71.98 0.43 -0.43 16 4 C -0.09 -1.37 5.10 30.59 0.16 -1.22 16 5 C 0.04 0.68 3.67 86.30 0.32 1.00 16 6 N -0.51 -11.68 5.02 -839.75 -4.21 -15.89 16 7 C 0.04 0.67 5.44 86.63 0.47 1.14 16 8 C -0.12 -2.22 7.07 31.89 0.23 -2.00 16 9 C -0.12 -2.96 6.19 31.29 0.19 -2.77 16 10 C 0.07 1.99 0.80 3.05 0.00 2.00 16 11 C -0.15 -2.94 5.69 31.50 0.18 -2.77 16 12 C 0.09 2.33 6.66 86.93 0.58 2.91 16 13 N -0.62 -23.24 2.94 -817.83 -2.41 -25.65 16 14 C 0.14 6.38 5.88 86.38 0.51 6.88 16 15 C 0.03 1.42 5.30 29.85 0.16 1.58 16 16 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 20 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.52 20.85 7.05 87.60 0.62 21.46 16 25 O -0.58 -29.75 17.13 -3.05 -0.05 -29.81 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.11 6.98 -2.39 -0.02 1.09 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.34 6.17 -2.38 -0.01 1.33 16 34 H 0.08 0.84 5.44 -2.39 -0.01 0.83 16 35 H 0.08 0.84 7.98 -2.39 -0.02 0.82 16 36 H 0.09 1.41 7.71 -2.39 -0.02 1.39 16 37 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.97 7.38 -2.39 -0.02 1.95 16 40 H 0.04 1.47 7.43 -2.38 -0.02 1.45 16 41 H 0.09 1.80 7.55 -2.39 -0.02 1.79 16 42 H 0.14 1.55 5.29 -2.39 -0.01 1.54 16 43 H 0.10 1.83 6.40 -2.39 -0.02 1.81 16 44 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 46 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 47 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 48 H -0.03 -1.87 8.14 -2.39 -0.02 -1.89 16 49 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -80.73 391.75 1.04 -79.69 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.91 Total: 11.91 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.75 Total: -3.16 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -6.33 Total: -99.30 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -1.26 Total: -6.36 kcal Total: -80.73 1.04 -79.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459133.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.132 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds