Wall clock time and date at job start Tue Mar 31 2020 14:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00092 * 2 1 4 4 C 1.53004 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46786 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46734 * 179.97438 * 5 4 3 7 7 C 1.48144 * 110.99978 * 69.87601 * 6 5 4 8 8 C 1.54077 * 107.15191 * 144.30313 * 7 6 5 9 9 C 1.54809 * 105.20333 * 358.93342 * 8 7 6 10 10 C 1.47663 * 110.96101 * 187.22352 * 6 5 4 11 11 C 1.53439 * 111.70644 * 81.78387 * 10 6 5 12 12 C 1.54748 * 101.46362 * 214.04305 * 11 10 6 13 13 N 1.46904 * 105.52471 * 24.38188 * 12 11 10 14 14 C 1.46495 * 124.37943 * 163.21281 * 13 12 11 15 15 C 1.52998 * 109.47460 * 89.97413 * 14 13 12 16 16 C 1.50701 * 109.47351 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99550 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46982 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47056 * 119.99708 * 20 18 16 23 23 H 1.48496 * 109.47151 * 240.00330 * 20 18 16 24 24 C 1.34818 * 111.24650 * 343.20762 * 13 12 11 25 25 O 1.21280 * 125.16703 * 181.11810 * 24 13 12 26 26 H 1.09002 * 109.46927 * 300.00166 * 1 2 3 27 27 H 1.09002 * 109.47436 * 59.99879 * 1 2 3 28 28 H 1.09001 * 109.47726 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46783 * 60.00156 * 3 2 1 30 30 H 1.09001 * 109.46980 * 300.00099 * 3 2 1 31 31 H 1.08997 * 109.47176 * 59.99869 * 4 3 2 32 32 H 1.09001 * 109.47106 * 299.99704 * 4 3 2 33 33 H 1.08996 * 109.46943 * 59.99833 * 5 4 3 34 34 H 1.09001 * 109.46973 * 299.99683 * 5 4 3 35 35 H 1.08998 * 109.90075 * 24.91596 * 7 6 5 36 36 H 1.09001 * 109.90150 * 263.67988 * 7 6 5 37 37 H 1.09007 * 110.29519 * 240.00303 * 8 7 6 38 38 H 1.09000 * 110.30035 * 117.86816 * 8 7 6 39 39 H 1.09002 * 110.74934 * 97.54423 * 9 8 7 40 40 H 1.09002 * 110.75152 * 220.71796 * 9 8 7 41 41 H 1.09005 * 111.02782 * 332.08166 * 11 10 6 42 42 H 1.08993 * 111.02858 * 95.95812 * 11 10 6 43 43 H 1.08998 * 110.23887 * 143.39863 * 12 11 10 44 44 H 1.08999 * 110.23481 * 265.37111 * 12 11 10 45 45 H 1.08998 * 109.47391 * 209.97395 * 14 13 12 46 46 H 1.09007 * 109.47027 * 329.97526 * 14 13 12 47 47 H 1.09004 * 109.47200 * 300.00185 * 15 14 13 48 48 H 1.08998 * 109.46883 * 60.00141 * 15 14 13 49 49 H 0.96997 * 120.00006 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5462 3.5962 0.0000 7 6 6.1272 3.1838 -1.2988 8 6 7.3071 4.1309 -1.5900 9 6 7.3407 5.1164 -0.3966 10 6 5.9170 5.0149 0.1740 11 6 5.8824 5.4336 1.6497 12 6 5.4113 6.9037 1.5414 13 7 4.6856 6.9911 0.2671 14 6 3.7730 8.0793 -0.0922 15 6 4.5560 9.1911 -0.7933 16 6 3.6173 10.3108 -1.1623 17 1 2.5673 10.2369 -0.9205 18 6 4.0990 11.4295 -1.8085 19 7 5.3777 11.5196 -2.1024 20 14 2.9355 12.8177 -2.2652 21 1 1.5589 12.4743 -1.8267 22 1 3.3712 14.0693 -1.5953 23 1 2.9513 13.0127 -3.7373 24 6 4.9681 5.9404 -0.5291 25 8 4.5231 5.7695 -1.6443 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8032 2.2370 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 4.1609 1.4703 -0.8908 32 1 4.1617 1.4702 0.8891 33 1 3.6680 3.8998 0.8904 34 1 3.6672 3.9008 -0.8896 35 1 5.3777 3.2719 -2.0853 36 1 6.4836 2.1556 -1.2361 37 1 7.1375 4.6709 -2.5216 38 1 8.2394 3.5686 -1.6424 39 1 8.0767 4.8019 0.3434 40 1 7.5481 6.1303 -0.7387 41 1 5.1652 4.8335 2.2099 42 1 6.8743 5.3721 2.0971 43 1 4.7480 7.1492 2.3707 44 1 6.2700 7.5750 1.5330 45 1 3.0015 7.7002 -0.7623 46 1 3.3076 8.4760 0.8102 47 1 5.3276 9.5703 -0.1231 48 1 5.0213 8.7944 -1.6955 49 1 5.7165 12.3064 -2.5574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272459134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:48 Heat of formation + Delta-G solvation = -39.099188 kcal Electronic energy + Delta-G solvation = -26665.244852 eV Core-core repulsion = 23138.877615 eV Total energy + Delta-G solvation = -3526.367237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19761 -37.68206 -36.12836 -34.80993 -33.59680 -31.85445 -31.05678 -29.25656 -29.11796 -27.69085 -25.76981 -25.11461 -23.50563 -22.21201 -21.90407 -20.48591 -20.29328 -18.60752 -16.82411 -16.58685 -16.05821 -15.95876 -15.65298 -15.41600 -15.08052 -14.80376 -14.52421 -14.17423 -14.02597 -13.79556 -13.53225 -13.43945 -12.98231 -12.80736 -12.74783 -12.64787 -12.43905 -12.20491 -11.98477 -11.67397 -11.59650 -11.36780 -11.25754 -11.18782 -10.99684 -10.94135 -10.71872 -10.63781 -10.58500 -10.25357 -10.05705 -9.89466 -9.74978 -9.24489 -8.42000 -8.30383 -8.03362 -7.95880 -6.06395 -4.10038 1.38998 2.31692 2.86794 3.27536 3.34542 3.38052 3.48363 3.80648 4.39159 4.42095 4.47271 4.65303 4.66626 4.80564 4.82382 4.84438 4.91081 5.05553 5.10884 5.18449 5.20184 5.27435 5.29939 5.36787 5.42087 5.57598 5.62518 5.66396 5.72782 5.81975 5.85108 5.90768 5.95561 5.99910 6.00431 6.05281 6.12294 6.23206 6.39524 6.75039 6.78788 6.88163 6.96703 7.44658 7.61877 7.79261 7.92978 8.29034 8.59082 8.96764 9.54306 11.05063 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.002937 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.334886 B = 9529.666564 C =10795.572649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.082 4.082 4 C -0.093 4.093 5 C 0.037 3.963 6 N -0.485 5.485 7 C 0.037 3.963 8 C -0.129 4.129 9 C -0.101 4.101 10 C 0.058 3.942 11 C -0.112 4.112 12 C 0.099 3.901 13 N -0.609 5.609 14 C 0.128 3.872 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.503 3.497 25 O -0.528 6.528 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -20.656 8.624 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.042 6.042 3 C -0.230 4.230 4 C -0.132 4.132 5 C -0.093 4.093 6 N -0.208 5.208 7 C -0.091 4.091 8 C -0.167 4.167 9 C -0.139 4.139 10 C -0.036 4.036 11 C -0.150 4.150 12 C -0.025 4.025 13 N -0.342 5.342 14 C 0.008 3.992 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.288 3.712 25 O -0.404 6.404 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.135 -21.773 8.364 23.324 hybrid contribution -1.831 2.531 -0.926 3.258 sum -1.966 -19.241 7.438 20.722 Atomic orbital electron populations 1.23370 0.94233 1.06398 1.05007 1.86860 1.07324 1.11926 1.98102 1.23374 1.00762 0.93733 1.05169 1.21206 0.91733 0.96372 1.03848 1.22434 0.88509 0.95914 1.02464 1.64851 1.10284 1.14156 1.31483 1.22930 0.96684 0.99183 0.90313 1.22429 0.98302 0.97064 0.98867 1.22249 0.93338 1.00525 0.97787 1.22201 0.96182 0.88621 0.96556 1.22468 1.03371 0.94876 0.94287 1.22171 0.97049 0.96618 0.86681 1.48692 1.44960 1.23427 1.17138 1.21809 0.91503 0.86427 0.99486 1.19398 0.95712 0.91675 0.95750 1.21116 0.94696 1.02082 1.38225 0.92471 1.25004 0.95124 0.98493 0.95652 1.69979 1.12899 1.29078 1.41153 0.86498 0.81086 0.81952 0.78249 1.19662 1.20933 1.20929 1.20890 0.82035 0.82775 0.85543 1.90677 1.55607 1.76013 1.18114 0.90502 0.90459 0.88163 0.89983 0.89963 0.90953 0.90265 0.90948 0.92135 0.92590 0.90377 0.90962 0.90924 0.89715 0.90372 0.89733 0.88897 0.90499 0.90836 0.91341 0.91635 0.96446 0.96177 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.76 101.05 1.09 0.22 16 2 S -0.27 -2.66 22.38 -107.50 -2.41 -5.06 16 3 C -0.08 -0.79 5.94 37.16 0.22 -0.57 16 4 C -0.09 -0.97 5.28 -26.73 -0.14 -1.11 16 5 C 0.04 0.46 3.83 -3.82 -0.01 0.44 16 6 N -0.48 -6.08 4.99 -217.66 -1.09 -7.17 16 7 C 0.04 0.45 5.29 -2.58 -0.01 0.44 16 8 C -0.13 -1.57 6.86 -25.22 -0.17 -1.75 16 9 C -0.10 -1.27 5.97 -25.41 -0.15 -1.42 16 10 C 0.06 0.79 0.55 -132.05 -0.07 0.71 16 11 C -0.11 -1.23 6.34 -25.58 -0.16 -1.39 16 12 C 0.10 1.31 7.37 -2.90 -0.02 1.28 16 13 N -0.61 -10.86 2.95 -172.54 -0.51 -11.36 16 14 C 0.13 2.68 5.88 -4.05 -0.02 2.66 16 15 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.50 9.08 5.56 -11.28 -0.06 9.01 16 25 O -0.53 -11.47 15.43 5.56 0.09 -11.38 16 26 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.89 7.36 -51.93 -0.38 0.51 16 34 H 0.06 0.93 5.87 -51.93 -0.30 0.63 16 35 H 0.06 0.79 7.42 -51.93 -0.39 0.41 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.87 7.77 -51.93 -0.40 0.46 16 40 H 0.08 1.11 8.01 -51.93 -0.42 0.70 16 41 H 0.08 0.86 7.43 -51.93 -0.39 0.47 16 42 H 0.09 0.82 7.63 -51.93 -0.40 0.43 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.52 7.95 -51.93 -0.41 1.10 16 46 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -32.76 396.39 -11.25 -44.01 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.94 Total: -0.66 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.09 Total: -4.76 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.86 Total: -44.73 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.41 Total: -5.06 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.76 -11.25 -44.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds