Wall clock time and date at job start Tue Mar 31 2020 14:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00092 * 2 1 4 4 C 1.53004 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46786 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46734 * 179.97438 * 5 4 3 7 7 C 1.48144 * 110.99978 * 69.87601 * 6 5 4 8 8 C 1.54077 * 107.15191 * 144.30313 * 7 6 5 9 9 C 1.54809 * 105.20333 * 358.93342 * 8 7 6 10 10 C 1.47663 * 110.96101 * 187.22352 * 6 5 4 11 11 C 1.53439 * 111.70644 * 81.78387 * 10 6 5 12 12 C 1.54748 * 101.46362 * 214.04305 * 11 10 6 13 13 N 1.46904 * 105.52471 * 24.38188 * 12 11 10 14 14 C 1.46495 * 124.37943 * 163.21281 * 13 12 11 15 15 C 1.52998 * 109.47460 * 89.97413 * 14 13 12 16 16 C 1.50701 * 109.47351 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99550 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99886 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99973 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46982 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47056 * 119.99708 * 20 18 16 23 23 H 1.48496 * 109.47151 * 240.00330 * 20 18 16 24 24 C 1.34818 * 111.24650 * 343.20762 * 13 12 11 25 25 O 1.21280 * 125.16703 * 181.11810 * 24 13 12 26 26 H 1.09002 * 109.46927 * 300.00166 * 1 2 3 27 27 H 1.09002 * 109.47436 * 59.99879 * 1 2 3 28 28 H 1.09001 * 109.47726 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46783 * 60.00156 * 3 2 1 30 30 H 1.09001 * 109.46980 * 300.00099 * 3 2 1 31 31 H 1.08997 * 109.47176 * 59.99869 * 4 3 2 32 32 H 1.09001 * 109.47106 * 299.99704 * 4 3 2 33 33 H 1.08996 * 109.46943 * 59.99833 * 5 4 3 34 34 H 1.09001 * 109.46973 * 299.99683 * 5 4 3 35 35 H 1.08998 * 109.90075 * 24.91596 * 7 6 5 36 36 H 1.09001 * 109.90150 * 263.67988 * 7 6 5 37 37 H 1.09007 * 110.29519 * 240.00303 * 8 7 6 38 38 H 1.09000 * 110.30035 * 117.86816 * 8 7 6 39 39 H 1.09002 * 110.74934 * 97.54423 * 9 8 7 40 40 H 1.09002 * 110.75152 * 220.71796 * 9 8 7 41 41 H 1.09005 * 111.02782 * 332.08166 * 11 10 6 42 42 H 1.08993 * 111.02858 * 95.95812 * 11 10 6 43 43 H 1.08998 * 110.23887 * 143.39863 * 12 11 10 44 44 H 1.08999 * 110.23481 * 265.37111 * 12 11 10 45 45 H 1.08998 * 109.47391 * 209.97395 * 14 13 12 46 46 H 1.09007 * 109.47027 * 329.97526 * 14 13 12 47 47 H 1.09004 * 109.47200 * 300.00185 * 15 14 13 48 48 H 1.08998 * 109.46883 * 60.00141 * 15 14 13 49 49 H 0.96997 * 120.00006 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5462 3.5962 0.0000 7 6 6.1272 3.1838 -1.2988 8 6 7.3071 4.1309 -1.5900 9 6 7.3407 5.1164 -0.3966 10 6 5.9170 5.0149 0.1740 11 6 5.8824 5.4336 1.6497 12 6 5.4113 6.9037 1.5414 13 7 4.6856 6.9911 0.2671 14 6 3.7730 8.0793 -0.0922 15 6 4.5560 9.1911 -0.7933 16 6 3.6173 10.3108 -1.1623 17 1 2.5673 10.2369 -0.9205 18 6 4.0990 11.4295 -1.8085 19 7 5.3777 11.5196 -2.1024 20 14 2.9355 12.8177 -2.2652 21 1 1.5589 12.4743 -1.8267 22 1 3.3712 14.0693 -1.5953 23 1 2.9513 13.0127 -3.7373 24 6 4.9681 5.9404 -0.5291 25 8 4.5231 5.7695 -1.6443 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8032 2.2370 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 4.1609 1.4703 -0.8908 32 1 4.1617 1.4702 0.8891 33 1 3.6680 3.8998 0.8904 34 1 3.6672 3.9008 -0.8896 35 1 5.3777 3.2719 -2.0853 36 1 6.4836 2.1556 -1.2361 37 1 7.1375 4.6709 -2.5216 38 1 8.2394 3.5686 -1.6424 39 1 8.0767 4.8019 0.3434 40 1 7.5481 6.1303 -0.7387 41 1 5.1652 4.8335 2.2099 42 1 6.8743 5.3721 2.0971 43 1 4.7480 7.1492 2.3707 44 1 6.2700 7.5750 1.5330 45 1 3.0015 7.7002 -0.7623 46 1 3.3076 8.4760 0.8102 47 1 5.3276 9.5703 -0.1231 48 1 5.0213 8.7944 -1.6955 49 1 5.7165 12.3064 -2.5574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272459134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:48 Heat of formation + Delta-G solvation = -59.641867 kcal Electronic energy + Delta-G solvation = -26666.135649 eV Core-core repulsion = 23138.877615 eV Total energy + Delta-G solvation = -3527.258034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40834 -38.91869 -37.57567 -35.93938 -35.40683 -33.52215 -32.00548 -30.80035 -29.82399 -28.82811 -27.05221 -26.66452 -24.70553 -23.60881 -23.15685 -21.77922 -21.41369 -19.94272 -18.72426 -17.79918 -17.24288 -17.00210 -16.88489 -16.67643 -16.48613 -16.08784 -15.91560 -15.11559 -15.00396 -14.85910 -14.63973 -14.52989 -14.36041 -14.27206 -13.98576 -13.78005 -13.61330 -13.40703 -13.19299 -13.06838 -12.91360 -12.67062 -12.54679 -12.50333 -12.24992 -12.22350 -12.00310 -11.92452 -11.87473 -11.63193 -11.52384 -11.42638 -11.03172 -10.98133 -10.64828 -9.67010 -9.40153 -8.72926 -8.27671 -6.40774 0.67190 1.36057 1.37550 1.47461 1.51018 1.62156 2.08277 2.38071 2.75678 3.05946 3.32942 3.43411 3.60464 3.78913 3.88717 3.97138 4.08808 4.11444 4.19589 4.24601 4.26830 4.29157 4.32761 4.34945 4.49281 4.56240 4.62182 4.63272 4.68480 4.74826 4.79831 4.82433 4.85614 4.94469 4.98851 5.02419 5.06514 5.13433 5.16944 5.25209 5.28708 5.41297 5.55416 5.72782 5.77699 5.84998 6.11054 6.24071 6.74789 7.15842 7.29428 8.84760 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.002937 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.334886 B = 9529.666564 C =10795.572649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.302 6.302 3 C -0.075 4.075 4 C -0.080 4.080 5 C 0.043 3.957 6 N -0.469 5.469 7 C 0.037 3.963 8 C -0.129 4.129 9 C -0.100 4.100 10 C 0.059 3.941 11 C -0.096 4.096 12 C 0.091 3.909 13 N -0.618 5.618 14 C 0.143 3.857 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.970 3.030 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.282 1.282 24 C 0.489 3.511 25 O -0.577 6.577 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.028 0.972 36 H 0.104 0.896 37 H 0.041 0.959 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.001 0.999 48 H -0.030 1.030 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -21.606 11.114 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.076 6.076 3 C -0.223 4.223 4 C -0.119 4.119 5 C -0.087 4.087 6 N -0.192 5.192 7 C -0.091 4.091 8 C -0.167 4.167 9 C -0.139 4.139 10 C -0.035 4.035 11 C -0.133 4.133 12 C -0.032 4.032 13 N -0.350 5.350 14 C 0.021 3.979 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.794 3.206 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.208 1.208 24 C 0.276 3.724 25 O -0.457 6.457 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.019 0.981 48 H -0.011 1.011 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.467 -22.740 10.896 25.220 hybrid contribution -1.727 2.810 -1.756 3.737 sum -2.195 -19.929 9.140 22.035 Atomic orbital electron populations 1.23439 0.91465 1.07554 1.05679 1.86934 1.10478 1.12034 1.98178 1.23286 1.00263 0.93663 1.05131 1.21079 0.92273 0.94638 1.03884 1.22365 0.88310 0.97112 1.00953 1.64991 1.10170 1.12920 1.31093 1.22975 0.96008 1.00569 0.89548 1.22451 0.99674 0.97094 0.97484 1.22341 0.93505 0.99318 0.98701 1.22316 0.95268 0.88029 0.97890 1.22542 1.05717 0.92813 0.92256 1.22512 0.97108 0.98543 0.84996 1.48803 1.44765 1.22353 1.19076 1.21350 0.90958 0.85912 0.99639 1.19192 0.95389 0.92976 0.93686 1.21568 0.95420 1.02852 1.38469 0.91577 1.26028 0.96901 1.01509 0.95355 1.70118 1.15071 1.30141 1.41908 0.85322 0.79142 0.78333 0.77798 1.18216 1.19737 1.20777 1.21871 0.82037 0.83441 0.85027 1.90639 1.57426 1.77208 1.20450 0.89472 0.90153 0.86759 0.89035 0.90968 0.91638 0.89308 0.90381 0.95728 0.95394 0.87828 0.94039 0.87794 0.85936 0.92857 0.88073 0.85482 0.88014 0.90972 0.93265 0.89033 0.98081 1.01149 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.76 113.37 1.22 -0.21 16 2 S -0.30 -5.70 22.38 -56.49 -1.26 -6.96 16 3 C -0.07 -1.41 5.94 71.98 0.43 -0.99 16 4 C -0.08 -1.60 5.28 30.60 0.16 -1.44 16 5 C 0.04 1.05 3.83 86.30 0.33 1.38 16 6 N -0.47 -11.18 4.99 -842.55 -4.20 -15.38 16 7 C 0.04 0.90 5.29 86.43 0.46 1.36 16 8 C -0.13 -3.13 6.86 31.58 0.22 -2.91 16 9 C -0.10 -2.42 5.97 31.45 0.19 -2.23 16 10 C 0.06 1.53 0.55 2.82 0.00 1.54 16 11 C -0.10 -1.79 6.34 31.34 0.20 -1.59 16 12 C 0.09 2.23 7.37 86.90 0.64 2.87 16 13 N -0.62 -22.37 2.95 -818.17 -2.41 -24.78 16 14 C 0.14 6.18 5.88 86.38 0.51 6.69 16 15 C 0.03 1.40 5.30 29.85 0.16 1.56 16 16 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 18 C 0.00 0.01 5.46 84.66 0.46 0.47 16 19 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 20 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 C 0.49 18.33 5.56 87.45 0.49 18.81 16 25 O -0.58 -27.03 15.43 -3.03 -0.05 -27.08 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.41 7.52 -2.39 -0.02 1.39 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.82 7.36 -2.39 -0.02 1.80 16 34 H 0.02 0.80 5.87 -2.39 -0.01 0.79 16 35 H 0.03 0.84 7.42 -2.39 -0.02 0.82 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 2.05 7.77 -2.39 -0.02 2.03 16 40 H 0.05 1.55 8.01 -2.39 -0.02 1.53 16 41 H 0.10 1.63 7.43 -2.38 -0.02 1.61 16 42 H 0.13 1.61 7.63 -2.39 -0.02 1.59 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 2.29 7.95 -2.39 -0.02 2.27 16 46 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 47 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 48 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.08 396.39 0.97 -75.10 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.90 Total: 16.00 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.69 Total: -5.97 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -6.33 Total: -97.80 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -5.70 SS G_CDS: -1.26 Total: -6.96 kcal Total: -76.08 0.97 -75.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.462 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds