Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 103.00076 * 2 1 4 4 C 1.52996 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47251 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47488 * 179.97438 * 5 4 3 7 7 C 1.47670 * 110.99752 * 69.43300 * 6 5 4 8 8 C 1.54524 * 107.05380 * 123.12393 * 7 6 5 9 9 C 1.54349 * 102.64138 * 22.91937 * 8 7 6 10 10 H 1.09002 * 110.75671 * 80.41016 * 9 8 7 11 11 C 1.48270 * 111.00583 * 189.99911 * 6 5 4 12 12 H 1.08999 * 111.35045 * 91.92444 * 11 6 5 13 13 C 1.53117 * 108.11043 * 329.41875 * 11 6 5 14 14 C 1.52889 * 109.33255 * 182.69783 * 13 11 6 15 15 C 1.50345 * 109.30695 * 52.84664 * 14 13 11 16 16 O 1.21282 * 118.80079 * 158.33966 * 15 14 13 17 17 N 1.33354 * 122.40053 * 338.36552 * 15 14 13 18 18 C 1.46496 * 117.28827 * 179.73212 * 17 15 14 19 19 C 1.52998 * 109.46847 * 90.00442 * 18 17 15 20 20 C 1.50706 * 109.47348 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99758 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00102 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00217 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47057 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47389 * 300.00068 * 24 22 20 27 27 H 1.48504 * 109.47102 * 60.00417 * 24 22 20 28 28 H 1.09000 * 109.47048 * 300.00362 * 1 2 3 29 29 H 1.09008 * 109.46966 * 59.99684 * 1 2 3 30 30 H 1.08994 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46953 * 60.00069 * 3 2 1 32 32 H 1.09003 * 109.46975 * 299.99828 * 3 2 1 33 33 H 1.09006 * 109.47553 * 59.99896 * 4 3 2 34 34 H 1.09003 * 109.47088 * 299.99783 * 4 3 2 35 35 H 1.09007 * 109.47153 * 60.00282 * 5 4 3 36 36 H 1.08994 * 109.47324 * 300.00078 * 5 4 3 37 37 H 1.08993 * 109.91868 * 242.47748 * 7 6 5 38 38 H 1.08996 * 109.91389 * 3.77893 * 7 6 5 39 39 H 1.08997 * 110.78481 * 141.27380 * 8 7 6 40 40 H 1.08996 * 110.78555 * 264.53671 * 8 7 6 41 41 H 1.09004 * 109.49796 * 62.74370 * 13 11 6 42 42 H 1.09004 * 109.51941 * 302.66546 * 13 11 6 43 43 H 1.08999 * 109.50061 * 292.89875 * 14 13 11 44 44 H 1.08993 * 109.50416 * 172.79805 * 14 13 11 45 45 H 1.09000 * 109.47627 * 330.00468 * 18 17 15 46 46 H 1.09002 * 109.46983 * 209.99864 * 18 17 15 47 47 H 1.09001 * 109.47671 * 59.99931 * 19 18 17 48 48 H 1.09006 * 109.47297 * 299.99651 * 19 18 17 49 49 H 0.97001 * 119.99646 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5462 3.5963 0.0012 7 6 6.1277 3.1739 -1.2887 8 6 6.9132 4.3811 -1.8487 9 6 7.2120 5.2076 -0.5799 10 1 8.0670 4.7963 -0.0434 11 6 5.9204 5.0108 0.2410 12 1 6.0725 5.2066 1.3024 13 6 4.8146 5.8998 -0.3346 14 6 5.2044 7.3681 -0.1622 15 6 6.5748 7.5896 -0.7395 16 8 6.8987 8.7133 -1.0612 17 7 7.4471 6.5956 -0.9112 18 6 8.7493 6.9371 -1.4889 19 6 9.7285 7.2888 -0.3672 20 6 11.0683 7.6395 -0.9614 21 1 11.2076 7.6136 -2.0321 22 6 12.1162 7.9933 -0.1382 23 7 11.9467 8.0243 1.1657 24 14 13.7771 8.4273 -0.8747 25 1 14.7271 8.7699 0.2140 26 1 14.2981 7.2659 -1.6397 27 1 13.6263 9.5916 -1.7841 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1617 1.4702 -0.8891 34 1 4.1608 1.4704 0.8909 35 1 3.6672 3.9008 0.8896 36 1 3.6681 3.8999 -0.8904 37 1 6.8020 2.3316 -1.1340 38 1 5.3331 2.8948 -1.9806 39 1 7.8375 4.0539 -2.3248 40 1 6.3005 4.9507 -2.5475 41 1 3.8808 5.7071 0.1937 42 1 4.6851 5.6800 -1.3944 43 1 5.2112 7.6207 0.8981 44 1 4.4842 7.9994 -0.6825 45 1 8.6381 7.7923 -2.1555 46 1 9.1319 6.0853 -2.0513 47 1 9.8397 6.4336 0.2995 48 1 9.3459 8.1406 0.1953 49 1 11.0843 7.7986 1.5481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272459455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = -41.166017 kcal Electronic energy + Delta-G solvation = -26320.192573 eV Core-core repulsion = 22793.735712 eV Total energy + Delta-G solvation = -3526.456861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13479 -38.78172 -35.85502 -34.59162 -33.43864 -33.05937 -30.73949 -29.43018 -28.93887 -28.27006 -25.88251 -24.80955 -23.61874 -22.53357 -21.85101 -21.28487 -19.96280 -18.11690 -17.10515 -16.80270 -16.60974 -16.28183 -16.00837 -15.69716 -15.00560 -14.75709 -14.64722 -14.10526 -14.01435 -13.94979 -13.70482 -13.60594 -13.39125 -13.15421 -12.91415 -12.70851 -12.48628 -12.40664 -11.91701 -11.78921 -11.75576 -11.69381 -11.49160 -11.29441 -11.14781 -10.86964 -10.79589 -10.74526 -10.40897 -10.27033 -10.03422 -9.99611 -9.31748 -8.62472 -8.57792 -8.29557 -8.13986 -8.12287 -6.34019 -4.02790 1.21257 2.14936 2.98584 3.22196 3.46024 3.49170 3.67177 3.72098 4.24313 4.34845 4.44696 4.57952 4.59170 4.63372 4.65254 4.66420 4.68908 4.83851 4.91260 4.95573 5.06176 5.12740 5.13693 5.16200 5.22625 5.29470 5.35965 5.44449 5.54823 5.60558 5.65711 5.68274 5.74454 5.80549 5.84004 6.00712 6.05606 6.12107 6.43377 6.60540 6.69941 6.74251 6.81174 7.39154 7.51703 7.94109 8.20160 8.47092 8.57803 8.89621 9.69620 11.06910 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.002304 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.269925 B =12147.539290 C =12788.077071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.082 4.082 4 C -0.101 4.101 5 C 0.055 3.945 6 N -0.520 5.520 7 C 0.043 3.957 8 C -0.155 4.155 9 C 0.144 3.856 10 H 0.100 0.900 11 C 0.068 3.932 12 H 0.106 0.894 13 C -0.146 4.146 14 C -0.133 4.133 15 C 0.510 3.490 16 O -0.546 6.546 17 N -0.590 5.590 18 C 0.116 3.884 19 C 0.003 3.997 20 C -0.600 4.600 21 H 0.049 0.951 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 1.070 2.930 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.288 1.288 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.006 0.994 48 H 0.012 0.988 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.092 -15.236 -2.800 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.231 4.231 4 C -0.140 4.140 5 C -0.075 4.075 6 N -0.243 5.243 7 C -0.085 4.085 8 C -0.195 4.195 9 C 0.038 3.962 10 H 0.118 0.882 11 C -0.041 4.041 12 H 0.124 0.876 13 C -0.185 4.185 14 C -0.174 4.174 15 C 0.297 3.703 16 O -0.424 6.424 17 N -0.321 5.321 18 C -0.005 4.005 19 C -0.035 4.035 20 C -0.639 4.639 21 H 0.068 0.932 22 C -0.188 4.188 23 N -0.547 5.547 24 Si 0.898 3.102 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.214 1.214 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.024 0.976 48 H 0.031 0.969 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.562 -15.398 -2.173 26.585 hybrid contribution -2.859 0.938 -1.033 3.182 sum -24.422 -14.460 -3.206 28.562 Atomic orbital electron populations 1.23378 0.94295 1.06539 1.04877 1.87034 1.07203 1.11543 1.98070 1.23361 1.00721 0.94148 1.04895 1.21319 0.91659 0.96661 1.04328 1.22280 0.88420 0.95521 1.01254 1.63808 1.09831 1.18774 1.31887 1.22926 0.98344 0.97972 0.89294 1.23162 1.01429 0.96731 0.98136 1.21456 0.98011 0.81881 0.94836 0.88234 1.22899 0.93655 0.86877 1.00651 0.87596 1.22289 0.99486 0.94749 1.01994 1.21605 0.94971 0.97388 1.03422 1.20007 0.86531 0.84682 0.79065 1.90743 1.78458 1.22378 1.50801 1.47121 1.16650 1.06295 1.62059 1.21774 0.80532 1.00327 0.97838 1.19461 0.94079 0.95997 0.93970 1.21908 0.96223 1.50970 0.94783 0.93246 1.25852 1.03641 0.94303 0.95049 1.70775 1.27262 1.45401 1.11258 0.83531 0.75048 0.76443 0.75146 1.20769 1.21430 1.21419 0.90487 0.90555 0.88085 0.89944 0.90208 0.90879 0.89905 0.90368 0.94011 0.89797 0.92338 0.89830 0.91081 0.90287 0.91253 0.88416 0.88502 0.90495 0.91826 0.97620 0.96931 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.76 101.05 1.09 0.49 16 2 S -0.26 -2.04 22.38 -107.50 -2.41 -4.45 16 3 C -0.08 -0.51 5.94 37.16 0.22 -0.29 16 4 C -0.10 -0.72 5.25 -26.73 -0.14 -0.86 16 5 C 0.06 0.41 3.34 -3.83 -0.01 0.40 16 6 N -0.52 -5.01 5.16 -223.03 -1.15 -6.16 16 7 C 0.04 0.40 6.17 -2.60 -0.02 0.38 16 8 C -0.16 -1.77 5.79 -25.22 -0.15 -1.92 16 9 C 0.14 2.00 3.11 -67.54 -0.21 1.79 16 10 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 11 C 0.07 0.75 3.51 -66.22 -0.23 0.52 16 12 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 13 C -0.15 -1.43 3.87 -26.73 -0.10 -1.54 16 14 C -0.13 -1.66 6.08 -28.11 -0.17 -1.83 16 15 C 0.51 9.24 7.47 -11.79 -0.09 9.15 16 16 O -0.55 -12.58 16.21 5.56 0.09 -12.49 16 17 N -0.59 -10.42 2.49 -166.44 -0.41 -10.84 16 18 C 0.12 2.52 5.02 -4.04 -0.02 2.49 16 19 C 0.00 0.07 4.59 -27.88 -0.13 -0.05 16 20 C -0.60 -17.53 9.11 -34.44 -0.31 -17.84 16 21 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 22 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 23 N -0.91 -28.65 13.65 55.43 0.76 -27.89 16 24 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 29 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.57 7.11 -51.93 -0.37 0.20 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.54 7.30 -51.93 -0.38 0.16 16 36 H 0.04 0.30 6.73 -51.93 -0.35 -0.05 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.48 6.90 -51.93 -0.36 0.12 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.83 7.39 -51.93 -0.38 0.44 16 41 H 0.08 0.60 6.38 -51.93 -0.33 0.27 16 42 H 0.07 0.69 6.53 -51.93 -0.34 0.36 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.08 1.81 7.14 -51.93 -0.37 1.44 16 46 H 0.06 1.27 7.79 -51.93 -0.40 0.86 16 47 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 48 H 0.01 0.37 8.01 -51.93 -0.42 -0.05 16 49 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -34.42 388.52 -11.41 -45.83 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.69 Total: -1.91 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.37 Total: -8.74 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.81 Total: -44.89 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.41 Total: -4.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.42 -11.41 -45.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.666 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds