Wall clock time and date at job start Tue Mar 31 2020 14:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 103.00076 * 2 1 4 4 C 1.52996 * 109.47096 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47251 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47488 * 179.97438 * 5 4 3 7 7 C 1.47670 * 110.99752 * 69.43300 * 6 5 4 8 8 C 1.54524 * 107.05380 * 123.12393 * 7 6 5 9 9 C 1.54349 * 102.64138 * 22.91937 * 8 7 6 10 10 H 1.09002 * 110.75671 * 80.41016 * 9 8 7 11 11 C 1.48270 * 111.00583 * 189.99911 * 6 5 4 12 12 H 1.08999 * 111.35045 * 91.92444 * 11 6 5 13 13 C 1.53117 * 108.11043 * 329.41875 * 11 6 5 14 14 C 1.52889 * 109.33255 * 182.69783 * 13 11 6 15 15 C 1.50345 * 109.30695 * 52.84664 * 14 13 11 16 16 O 1.21282 * 118.80079 * 158.33966 * 15 14 13 17 17 N 1.33354 * 122.40053 * 338.36552 * 15 14 13 18 18 C 1.46496 * 117.28827 * 179.73212 * 17 15 14 19 19 C 1.52998 * 109.46847 * 90.00442 * 18 17 15 20 20 C 1.50706 * 109.47348 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99758 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00102 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00217 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47057 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47389 * 300.00068 * 24 22 20 27 27 H 1.48504 * 109.47102 * 60.00417 * 24 22 20 28 28 H 1.09000 * 109.47048 * 300.00362 * 1 2 3 29 29 H 1.09008 * 109.46966 * 59.99684 * 1 2 3 30 30 H 1.08994 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46953 * 60.00069 * 3 2 1 32 32 H 1.09003 * 109.46975 * 299.99828 * 3 2 1 33 33 H 1.09006 * 109.47553 * 59.99896 * 4 3 2 34 34 H 1.09003 * 109.47088 * 299.99783 * 4 3 2 35 35 H 1.09007 * 109.47153 * 60.00282 * 5 4 3 36 36 H 1.08994 * 109.47324 * 300.00078 * 5 4 3 37 37 H 1.08993 * 109.91868 * 242.47748 * 7 6 5 38 38 H 1.08996 * 109.91389 * 3.77893 * 7 6 5 39 39 H 1.08997 * 110.78481 * 141.27380 * 8 7 6 40 40 H 1.08996 * 110.78555 * 264.53671 * 8 7 6 41 41 H 1.09004 * 109.49796 * 62.74370 * 13 11 6 42 42 H 1.09004 * 109.51941 * 302.66546 * 13 11 6 43 43 H 1.08999 * 109.50061 * 292.89875 * 14 13 11 44 44 H 1.08993 * 109.50416 * 172.79805 * 14 13 11 45 45 H 1.09000 * 109.47627 * 330.00468 * 18 17 15 46 46 H 1.09002 * 109.46983 * 209.99864 * 18 17 15 47 47 H 1.09001 * 109.47671 * 59.99931 * 19 18 17 48 48 H 1.09006 * 109.47297 * 299.99651 * 19 18 17 49 49 H 0.97001 * 119.99646 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0000 6 7 5.5462 3.5963 0.0012 7 6 6.1277 3.1739 -1.2887 8 6 6.9132 4.3811 -1.8487 9 6 7.2120 5.2076 -0.5799 10 1 8.0670 4.7963 -0.0434 11 6 5.9204 5.0108 0.2410 12 1 6.0725 5.2066 1.3024 13 6 4.8146 5.8998 -0.3346 14 6 5.2044 7.3681 -0.1622 15 6 6.5748 7.5896 -0.7395 16 8 6.8987 8.7133 -1.0612 17 7 7.4471 6.5956 -0.9112 18 6 8.7493 6.9371 -1.4889 19 6 9.7285 7.2888 -0.3672 20 6 11.0683 7.6395 -0.9614 21 1 11.2076 7.6136 -2.0321 22 6 12.1162 7.9933 -0.1382 23 7 11.9467 8.0243 1.1657 24 14 13.7771 8.4273 -0.8747 25 1 14.7271 8.7699 0.2140 26 1 14.2981 7.2659 -1.6397 27 1 13.6263 9.5916 -1.7841 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8032 2.2371 -0.8900 33 1 4.1617 1.4702 -0.8891 34 1 4.1608 1.4704 0.8909 35 1 3.6672 3.9008 0.8896 36 1 3.6681 3.8999 -0.8904 37 1 6.8020 2.3316 -1.1340 38 1 5.3331 2.8948 -1.9806 39 1 7.8375 4.0539 -2.3248 40 1 6.3005 4.9507 -2.5475 41 1 3.8808 5.7071 0.1937 42 1 4.6851 5.6800 -1.3944 43 1 5.2112 7.6207 0.8981 44 1 4.4842 7.9994 -0.6825 45 1 8.6381 7.7923 -2.1555 46 1 9.1319 6.0853 -2.0513 47 1 9.8397 6.4336 0.2995 48 1 9.3459 8.1406 0.1953 49 1 11.0843 7.7986 1.5481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272459455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:51 Heat of formation + Delta-G solvation = -63.248770 kcal Electronic energy + Delta-G solvation = -26321.150153 eV Core-core repulsion = 22793.735712 eV Total energy + Delta-G solvation = -3527.414441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27355 -39.99639 -37.21440 -35.99292 -34.78394 -34.36447 -31.96938 -30.54970 -29.78180 -29.26664 -26.70383 -26.49396 -24.99379 -23.65945 -23.12407 -22.57723 -20.82227 -19.31781 -18.99295 -18.10699 -17.71639 -17.32340 -16.86147 -16.55139 -16.12333 -15.82655 -15.65598 -15.42085 -15.18097 -15.00895 -14.84966 -14.51063 -14.41792 -14.23303 -14.02344 -13.82818 -13.69408 -13.55904 -13.20009 -12.97732 -12.78056 -12.66650 -12.58292 -12.37634 -12.31248 -12.04189 -11.98428 -11.92510 -11.90137 -11.74560 -11.48802 -10.97834 -10.89384 -10.60881 -10.59292 -9.73731 -9.31164 -8.75555 -8.68127 -6.46104 0.75771 1.49755 1.55774 1.59634 1.71482 1.78802 1.93424 2.54745 2.85498 3.10860 3.30754 3.44825 3.57184 3.73555 3.94077 3.98724 4.09389 4.12391 4.14694 4.23024 4.27380 4.31363 4.34743 4.35495 4.38250 4.46760 4.48442 4.62694 4.68715 4.69795 4.73499 4.75043 4.78172 4.82809 4.90288 4.92217 5.00854 5.11042 5.18065 5.21259 5.26587 5.28413 5.41649 5.84155 5.91151 6.07462 6.09933 6.47404 6.51450 7.12367 7.37106 8.64931 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.002304 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.269925 B =12147.539290 C =12788.077071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.328 6.328 3 C -0.067 4.067 4 C -0.093 4.093 5 C 0.055 3.945 6 N -0.526 5.526 7 C 0.050 3.950 8 C -0.147 4.147 9 C 0.131 3.869 10 H 0.076 0.924 11 C 0.074 3.926 12 H 0.102 0.898 13 C -0.135 4.135 14 C -0.122 4.122 15 C 0.497 3.503 16 O -0.606 6.606 17 N -0.587 5.587 18 C 0.132 3.868 19 C 0.013 3.987 20 C -0.619 4.619 21 H 0.055 0.945 22 C -0.040 4.040 23 N -0.934 5.934 24 Si 1.122 2.878 25 H -0.282 1.282 26 H -0.261 1.261 27 H -0.272 1.272 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.081 0.919 47 H -0.007 1.007 48 H -0.029 1.029 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.156 -16.388 -3.684 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.102 6.102 3 C -0.216 4.216 4 C -0.132 4.132 5 C -0.074 4.074 6 N -0.249 5.249 7 C -0.078 4.078 8 C -0.187 4.187 9 C 0.026 3.974 10 H 0.094 0.906 11 C -0.034 4.034 12 H 0.120 0.880 13 C -0.173 4.173 14 C -0.162 4.162 15 C 0.288 3.712 16 O -0.488 6.488 17 N -0.316 5.316 18 C 0.009 3.991 19 C -0.024 4.024 20 C -0.657 4.657 21 H 0.073 0.927 22 C -0.237 4.237 23 N -0.570 5.570 24 Si 0.941 3.059 25 H -0.207 1.207 26 H -0.186 1.186 27 H -0.197 1.197 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.011 0.989 48 H -0.010 1.010 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.679 -16.612 -3.054 29.086 hybrid contribution -2.247 1.263 -0.724 2.677 sum -25.926 -15.348 -3.778 30.364 Atomic orbital electron populations 1.23399 0.91240 1.07265 1.05824 1.87263 1.10737 1.14010 1.98228 1.23295 0.99886 0.92440 1.05980 1.21211 0.92364 0.96317 1.03316 1.22361 0.86764 0.95771 1.02492 1.63807 1.11645 1.17436 1.32061 1.22890 0.98643 0.96722 0.89503 1.23091 1.01689 0.97060 0.96820 1.21685 0.99086 0.79693 0.96928 0.90570 1.22782 0.92433 0.88316 0.99903 0.88025 1.22284 1.00203 0.92046 1.02773 1.21628 0.91044 0.99888 1.03670 1.21190 0.88514 0.83601 0.77940 1.90709 1.79990 1.24719 1.53357 1.47132 1.14947 1.08146 1.61422 1.21283 0.81875 1.00112 0.95805 1.19290 0.94686 0.93694 0.94781 1.22360 0.97401 1.50670 0.95293 0.92654 1.27581 1.07986 0.93418 0.94729 1.70921 1.26431 1.47219 1.12475 0.82902 0.70392 0.77664 0.74893 1.20719 1.18588 1.19745 0.89537 0.89540 0.87545 0.88882 0.88966 0.91524 0.91388 0.89127 0.92576 0.89905 0.90342 0.90343 0.90756 0.86593 0.90722 0.87171 0.86797 0.92719 0.90068 0.98850 1.01022 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.76 113.37 1.22 0.41 16 2 S -0.33 -4.58 22.38 -56.49 -1.26 -5.84 16 3 C -0.07 -0.64 5.94 71.98 0.43 -0.21 16 4 C -0.09 -1.08 5.25 30.59 0.16 -0.92 16 5 C 0.06 0.61 3.34 86.30 0.29 0.90 16 6 N -0.53 -8.81 5.16 -859.54 -4.43 -13.24 16 7 C 0.05 0.83 6.17 86.67 0.53 1.37 16 8 C -0.15 -3.17 5.79 31.57 0.18 -2.99 16 9 C 0.13 3.62 3.11 46.24 0.14 3.76 16 10 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 11 C 0.07 1.51 3.51 45.13 0.16 1.66 16 12 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.13 -2.16 3.87 30.60 0.12 -2.05 16 14 C -0.12 -2.80 6.08 29.70 0.18 -2.62 16 15 C 0.50 18.30 7.47 87.77 0.66 18.95 16 16 O -0.61 -29.10 16.21 -3.04 -0.05 -29.15 16 17 N -0.59 -21.23 2.49 -799.66 -1.99 -23.22 16 18 C 0.13 5.96 5.02 86.38 0.43 6.39 16 19 C 0.01 0.75 4.59 29.85 0.14 0.89 16 20 C -0.62 -37.18 9.11 25.60 0.23 -36.95 16 21 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 22 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 23 N -0.93 -60.53 13.65 21.45 0.29 -60.23 16 24 Si 1.12 51.93 29.90 68.60 2.05 53.99 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.87 7.11 -2.38 -0.02 0.86 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.83 7.30 -2.38 -0.02 0.81 16 36 H 0.06 0.51 6.73 -2.39 -0.02 0.49 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.02 6.90 -2.39 -0.02 1.01 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.58 7.39 -2.39 -0.02 1.56 16 41 H 0.12 1.13 6.38 -2.38 -0.02 1.12 16 42 H 0.07 1.19 6.53 -2.39 -0.02 1.17 16 43 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 2.70 7.14 -2.39 -0.02 2.68 16 46 H 0.08 3.32 7.79 -2.39 -0.02 3.30 16 47 H -0.01 -0.39 8.01 -2.39 -0.02 -0.41 16 48 H -0.03 -1.82 8.01 -2.38 -0.02 -1.84 16 49 H 0.25 16.71 7.22 -92.71 -0.67 16.04 16 Total: -1.00 -79.51 388.52 0.95 -78.56 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.01 Total: 12.51 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 5.34 Total: -13.37 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -6.13 Total: -96.70 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.15 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.99 kcal Atomic # 16 Polarization: -4.58 SS G_CDS: -1.26 Total: -5.84 kcal Total: -79.51 0.95 -78.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.313 kcal (2) G-P(sol) polarization free energy of solvation -79.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds