Wall clock time and date at job start Tue Mar 31 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81396 * 103.00363 * 2 1 4 4 C 1.53000 * 109.47419 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47013 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.46989 * 180.02562 * 5 4 3 7 7 C 1.48645 * 110.99887 * 290.12791 * 6 5 4 8 8 C 1.54644 * 104.63447 * 201.48807 * 7 6 5 9 9 C 1.53254 * 104.67052 * 23.68296 * 8 7 6 10 10 C 1.53604 * 111.08651 * 120.48178 * 9 8 7 11 11 C 1.54708 * 101.51049 * 144.99163 * 10 9 8 12 12 N 1.46881 * 105.51907 * 335.48046 * 11 10 9 13 13 C 1.46500 * 124.37036 * 196.78572 * 12 11 10 14 14 C 1.52997 * 109.47473 * 89.99839 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 C 1.34751 * 111.25765 * 17.04800 * 12 11 10 24 24 O 1.21272 * 125.13544 * 178.76061 * 23 12 11 25 25 C 1.48804 * 110.99856 * 174.51069 * 6 5 4 26 26 H 1.09000 * 109.46518 * 60.00230 * 1 2 3 27 27 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47021 * 300.00575 * 1 2 3 29 29 H 1.09002 * 109.47147 * 59.99372 * 3 2 1 30 30 H 1.08999 * 109.46838 * 300.00077 * 3 2 1 31 31 H 1.09004 * 109.46643 * 60.00329 * 4 3 2 32 32 H 1.08997 * 109.46839 * 299.99915 * 4 3 2 33 33 H 1.09000 * 109.46648 * 60.00081 * 5 4 3 34 34 H 1.08999 * 109.47281 * 300.00305 * 5 4 3 35 35 H 1.09004 * 110.40676 * 82.70536 * 7 6 5 36 36 H 1.08996 * 110.41017 * 320.28040 * 7 6 5 37 37 H 1.08992 * 110.39990 * 264.88012 * 8 7 6 38 38 H 1.09002 * 110.39536 * 142.47386 * 8 7 6 39 39 H 1.09005 * 111.02209 * 26.93487 * 10 9 8 40 40 H 1.09000 * 111.01834 * 263.04469 * 10 9 8 41 41 H 1.09001 * 110.23638 * 216.46681 * 11 10 9 42 42 H 1.09000 * 110.23730 * 94.49184 * 11 10 9 43 43 H 1.09002 * 109.47129 * 329.99581 * 13 12 11 44 44 H 1.08998 * 109.46845 * 210.00388 * 13 12 11 45 45 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 46 46 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 47 47 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 48 48 H 1.08998 * 110.45750 * 39.48196 * 25 6 5 49 49 H 1.08995 * 110.45452 * 276.91488 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0000 6 7 5.5463 3.5962 0.0000 7 6 6.1293 3.1823 1.3032 8 6 7.4967 3.9018 1.3656 9 6 7.3451 5.1055 0.4292 10 6 7.5703 6.4244 1.1836 11 6 8.2623 7.2854 0.1003 12 7 8.8868 6.3285 -0.8225 13 6 9.9313 6.6738 -1.7901 14 6 11.3056 6.5020 -1.1402 15 6 12.3800 6.8566 -2.1357 16 1 12.1096 7.1733 -3.1322 17 6 13.7082 6.7778 -1.7740 18 7 14.6456 7.0878 -2.6427 19 14 14.1758 6.2308 -0.0502 20 1 14.3387 4.7549 -0.0264 21 1 15.4538 6.8762 0.3442 22 1 13.1070 6.6263 0.9017 23 6 8.3711 5.0932 -0.6683 24 8 8.6890 4.1183 -1.3157 25 6 5.9203 5.0303 -0.1335 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8032 2.2371 0.8899 30 1 1.8033 2.2370 -0.8900 31 1 4.1617 1.4702 -0.8892 32 1 4.1609 1.4704 0.8909 33 1 3.6672 3.9007 0.8896 34 1 3.6681 3.8999 -0.8904 35 1 6.2671 2.1014 1.3318 36 1 5.4913 3.5068 2.1252 37 1 8.2893 3.2427 1.0117 38 1 7.7044 4.2354 2.3823 39 1 8.2249 6.2767 2.0426 40 1 6.6222 6.8674 1.4882 41 1 9.0216 7.9227 0.5535 42 1 7.5257 7.8917 -0.4268 43 1 9.8057 7.7094 -2.1062 44 1 9.8547 6.0176 -2.6570 45 1 11.4312 5.4664 -0.8241 46 1 11.3821 7.1583 -0.2733 47 1 15.5801 7.0320 -2.3884 48 1 5.2461 5.6559 0.4515 49 1 5.9080 5.3312 -1.1810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272459510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:39 Heat of formation + Delta-G solvation = -35.563117 kcal Electronic energy + Delta-G solvation = -25780.066801 eV Core-core repulsion = 22253.852899 eV Total energy + Delta-G solvation = -3526.213901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99982 -38.30666 -36.06239 -35.10707 -33.51428 -32.15500 -30.59666 -29.41345 -29.31502 -28.16957 -26.20163 -25.14240 -23.23559 -22.53195 -21.66378 -20.94507 -20.12551 -18.66235 -16.99894 -16.79712 -16.30983 -16.02558 -15.78788 -15.43107 -15.31592 -14.79887 -14.37453 -14.27776 -14.13942 -13.94168 -13.84419 -13.44236 -13.30631 -12.92445 -12.82103 -12.76709 -12.55782 -12.48287 -12.37316 -12.03540 -11.73598 -11.54954 -11.44663 -11.37100 -11.09137 -10.99668 -10.84919 -10.72264 -10.42321 -10.38205 -10.10789 -9.82521 -9.33952 -9.14844 -8.67256 -8.54926 -8.12999 -8.09976 -6.05999 -4.04832 1.23270 2.17230 2.94830 3.31668 3.38299 3.41232 3.46483 3.64047 4.27791 4.31804 4.35598 4.44612 4.47231 4.64675 4.66428 4.68572 4.75137 4.88708 4.91095 5.00340 5.02328 5.12692 5.20675 5.23237 5.26980 5.28302 5.33168 5.41541 5.55780 5.62291 5.64981 5.70547 5.72156 5.83870 5.87830 5.92121 5.98780 6.10199 6.33771 6.57729 6.61637 6.78898 6.86130 7.20094 7.34402 7.66136 7.76082 8.48160 8.64955 8.97224 9.56002 11.07109 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.002122 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.558963 B =13192.144100 C =13389.855163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.082 4.082 4 C -0.100 4.100 5 C 0.051 3.949 6 N -0.504 5.504 7 C 0.036 3.964 8 C -0.105 4.105 9 C -0.101 4.101 10 C -0.123 4.123 11 C 0.101 3.899 12 N -0.618 5.618 13 C 0.137 3.863 14 C -0.024 4.024 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.528 3.472 24 O -0.515 6.515 25 C 0.062 3.938 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.264 0.736 48 H 0.054 0.946 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.416 -5.610 11.636 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.231 4.231 4 C -0.138 4.138 5 C -0.079 4.079 6 N -0.228 5.228 7 C -0.091 4.091 8 C -0.144 4.144 9 C -0.105 4.105 10 C -0.161 4.161 11 C -0.023 4.023 12 N -0.352 5.352 13 C 0.017 3.983 14 C -0.062 4.062 15 C -0.560 4.560 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.192 1.192 23 C 0.314 3.686 24 O -0.389 6.389 25 C -0.066 4.066 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.134 -7.292 10.735 30.983 hybrid contribution -0.800 1.379 1.527 2.208 sum -28.934 -5.913 12.262 31.977 Atomic orbital electron populations 1.23377 0.94366 1.06537 1.04827 1.87077 1.07101 1.11496 1.98061 1.23364 1.00717 0.94189 1.04829 1.21266 0.91656 0.96470 1.04455 1.22228 0.88612 0.96000 1.01040 1.65419 1.09482 1.16534 1.31322 1.23190 0.94939 1.01090 0.89931 1.22224 0.98277 0.95536 0.98321 1.21413 0.95829 0.96975 0.96320 1.22721 1.01676 0.93903 0.97814 1.22067 0.97242 0.92378 0.90597 1.48684 1.39027 1.09105 1.38371 1.21566 0.86154 1.00302 0.90298 1.19885 0.92413 0.96841 0.97049 1.20970 0.89727 1.45770 0.99495 0.90797 1.24975 0.96455 0.94608 0.97148 1.69907 1.00288 1.48937 1.34798 0.86762 0.77779 0.79261 0.85375 1.20185 1.21346 1.19211 1.20084 0.81607 0.83024 0.83922 1.90715 1.62994 1.35723 1.49500 1.22845 0.92693 0.89374 1.01673 0.90496 0.88078 0.90593 0.90246 0.89948 0.89770 0.90865 0.94523 0.90515 0.89762 0.93745 0.89695 0.90474 0.89660 0.89510 0.90170 0.91483 0.91066 0.90541 0.96613 0.96556 0.92658 0.92740 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.76 101.05 1.09 0.46 16 2 S -0.26 -2.18 22.38 -107.50 -2.41 -4.58 16 3 C -0.08 -0.55 5.94 37.16 0.22 -0.33 16 4 C -0.10 -0.81 5.28 -26.73 -0.14 -0.95 16 5 C 0.05 0.42 4.81 -3.82 -0.02 0.40 16 6 N -0.50 -5.59 5.37 -230.16 -1.24 -6.82 16 7 C 0.04 0.36 5.76 -1.99 -0.01 0.35 16 8 C -0.11 -1.23 6.28 -25.74 -0.16 -1.39 16 9 C -0.10 -1.27 0.83 -155.24 -0.13 -1.40 16 10 C -0.12 -1.21 6.20 -25.52 -0.16 -1.37 16 11 C 0.10 1.23 7.36 -2.94 -0.02 1.21 16 12 N -0.62 -10.66 2.94 -172.52 -0.51 -11.17 16 13 C 0.14 2.81 5.89 -4.04 -0.02 2.79 16 14 C -0.02 -0.58 4.36 -27.88 -0.12 -0.70 16 15 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 19 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 23 C 0.53 9.44 6.60 -11.22 -0.07 9.37 16 24 O -0.51 -11.53 17.17 5.56 0.10 -11.43 16 25 C 0.06 0.67 5.66 -2.57 -0.01 0.66 16 26 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.63 7.27 -51.93 -0.38 0.25 16 33 H 0.04 0.26 7.88 -51.93 -0.41 -0.15 16 34 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 36 H 0.04 0.36 7.81 -51.93 -0.41 -0.04 16 37 H 0.08 1.23 7.48 -51.93 -0.39 0.84 16 38 H 0.08 0.73 7.43 -51.93 -0.39 0.34 16 39 H 0.08 0.81 7.60 -51.93 -0.39 0.41 16 40 H 0.09 0.61 7.46 -51.93 -0.39 0.22 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.70 7.93 -51.93 -0.41 1.28 16 45 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.05 0.45 7.32 -51.93 -0.38 0.07 16 49 H 0.08 1.02 7.84 -51.93 -0.41 0.61 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -34.72 397.19 -10.89 -45.61 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.93 Total: -3.64 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 0.00 Total: -4.31 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.97 Total: -45.22 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.10 Total: -11.43 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.41 Total: -4.58 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.72 -10.89 -45.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272459510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.050 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds