Wall clock time and date at job start Tue Mar 31 2020 14:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00349 * 2 1 4 4 H 1.48501 * 109.47533 * 269.99996 * 3 2 1 5 5 H 1.48507 * 109.47107 * 30.00272 * 3 2 1 6 6 H 1.48504 * 109.47219 * 150.00136 * 3 2 1 7 7 C 1.37884 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99716 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00053 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.48220 * 111.00156 * 169.99736 * 10 9 7 12 12 C 1.52563 * 85.73690 * 223.30468 * 11 10 9 13 13 C 1.48229 * 111.00271 * 70.33955 * 10 9 7 14 14 C 1.53860 * 115.91236 * 265.17771 * 12 11 10 15 15 C 1.55154 * 101.48390 * 196.17670 * 14 12 11 16 16 N 1.47963 * 104.97371 * 35.71253 * 15 14 12 17 17 C 1.46897 * 111.00014 * 213.86976 * 16 15 14 18 18 C 1.50701 * 109.46576 * 290.81636 * 17 16 15 19 19 N 1.30113 * 124.95353 * 274.69277 * 18 17 16 20 20 C 1.35784 * 109.64611 * 179.87357 * 19 18 17 21 21 C 1.39734 * 133.60044 * 180.11531 * 20 19 18 22 22 C 1.36602 * 119.88272 * 180.30235 * 21 20 19 23 23 C 1.38776 * 120.67466 * 359.97438 * 22 21 20 24 24 C 1.37860 * 120.44682 * 0.06512 * 23 22 21 25 25 C 1.38831 * 119.69048 * 359.91727 * 24 23 22 26 26 N 1.36041 * 124.94865 * 95.00626 * 18 17 16 27 27 H 0.96998 * 126.34688 * 359.92938 * 26 18 17 28 28 C 1.47786 * 108.54520 * 336.12372 * 16 15 14 29 29 H 0.97003 * 119.99746 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47317 * 59.99785 * 9 7 2 31 31 H 1.09001 * 109.46826 * 300.00298 * 9 7 2 32 32 H 1.09002 * 113.82981 * 109.10410 * 11 10 9 33 33 H 1.08997 * 113.94445 * 337.52162 * 11 10 9 34 34 H 1.08996 * 113.82673 * 22.49288 * 13 10 9 35 35 H 1.08994 * 113.83174 * 250.89637 * 13 10 9 36 36 H 1.09004 * 111.02310 * 314.22610 * 14 12 11 37 37 H 1.09000 * 111.02576 * 78.08594 * 14 12 11 38 38 H 1.08998 * 110.33920 * 276.84214 * 15 14 12 39 39 H 1.08999 * 110.33629 * 154.58280 * 15 14 12 40 40 H 1.08997 * 109.46829 * 50.81547 * 17 16 15 41 41 H 1.08997 * 109.46912 * 170.82050 * 17 16 15 42 42 H 1.08003 * 120.06144 * 0.27645 * 21 20 19 43 43 H 1.08011 * 119.66297 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.77605 * 180.02562 * 23 22 21 45 45 H 1.08003 * 120.14991 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.98836 * 121.28880 * 28 16 15 47 47 H 1.08999 * 109.98674 * 242.55845 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 -0.0013 11 6 5.4631 -2.6255 -0.2411 12 6 5.1568 -3.7861 -1.1829 13 6 3.7398 -3.2338 -1.3053 14 6 5.2786 -5.1946 -0.5759 15 6 5.3284 -6.0772 -1.8510 16 7 6.0861 -5.2784 -2.8395 17 6 5.5859 -5.5131 -4.2006 18 6 5.9354 -6.9149 -4.6293 19 7 7.0673 -7.2708 -5.1633 20 6 7.0497 -8.6030 -5.4251 21 6 7.9774 -9.4883 -5.9803 22 6 7.6569 -10.8085 -6.1237 23 6 6.4163 -11.2835 -5.7224 24 6 5.4851 -10.4282 -5.1729 25 6 5.7932 -9.0832 -5.0191 26 7 5.1111 -7.9916 -4.5200 27 1 4.2112 -7.9923 -4.1579 28 6 5.9761 -3.8508 -2.4737 29 1 -0.4850 0.8401 0.0004 30 1 3.8746 -0.6810 0.8904 31 1 3.8752 -0.6797 -0.8894 32 1 6.0443 -2.9115 0.6355 33 1 5.8571 -1.7425 -0.7441 34 1 3.6096 -2.5342 -2.1309 35 1 2.9641 -3.9985 -1.2665 36 1 6.1966 -5.2927 0.0036 37 1 4.4070 -5.4349 0.0328 38 1 4.3201 -6.2735 -2.2155 39 1 5.8464 -7.0136 -1.6436 40 1 4.5033 -5.3875 -4.2165 41 1 6.0446 -4.7990 -4.8844 42 1 8.9459 -9.1294 -6.2960 43 1 8.3765 -11.4896 -6.5537 44 1 6.1784 -12.3301 -5.8421 45 1 4.5209 -10.8029 -4.8626 46 1 6.9683 -3.4314 -2.3067 47 1 5.4682 -3.3011 -3.2662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:31 Heat of formation + Delta-G solvation = 120.978634 kcal Electronic energy + Delta-G solvation = -26849.900421 eV Core-core repulsion = 23227.323479 eV Total energy + Delta-G solvation = -3622.576942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36677 -40.51170 -37.89452 -36.99090 -33.37792 -33.09524 -31.97816 -30.23329 -29.78879 -29.43818 -27.67384 -25.94711 -25.77356 -23.29766 -22.74437 -22.32606 -21.68346 -20.78504 -20.25272 -18.45585 -18.02850 -17.45657 -16.90102 -16.18210 -16.11058 -15.36816 -15.24157 -14.82580 -14.59822 -14.49077 -14.25576 -14.09599 -13.74688 -13.64420 -13.49786 -12.62353 -12.42015 -12.36187 -12.25323 -12.12052 -12.00896 -11.78228 -11.77548 -11.67616 -11.32617 -11.00173 -10.90679 -10.88888 -10.59017 -10.15925 -10.13466 -9.88620 -9.73345 -9.32953 -8.68016 -8.65504 -8.53575 -8.35236 -7.93664 -6.12641 -4.10950 0.68913 1.26832 2.47959 2.62422 3.22259 3.30846 3.32852 3.61087 3.79250 3.93540 4.30928 4.35380 4.39089 4.54595 4.66899 4.73161 4.80761 4.85959 4.95273 5.07715 5.16371 5.18628 5.19498 5.21932 5.30800 5.36861 5.46359 5.50946 5.70820 5.79944 5.82436 5.89183 5.93078 6.03609 6.08194 6.12499 6.23648 6.24839 6.27597 6.28129 6.40529 6.45654 6.61490 6.72405 6.76768 6.78252 7.06832 7.25142 7.69244 7.70707 7.80006 8.53600 8.94624 9.48786 11.00502 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.002173 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.611800 B =12881.234919 C =13109.711457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.129 3.871 10 N -0.465 5.465 11 C 0.012 3.988 12 C -0.113 4.113 13 C 0.036 3.964 14 C -0.095 4.095 15 C 0.040 3.960 16 N -0.518 5.518 17 C 0.124 3.876 18 C 0.302 3.698 19 N -0.476 5.476 20 C 0.047 3.953 21 C -0.064 4.064 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.111 4.111 25 C 0.047 3.953 26 N -0.598 5.598 27 H 0.422 0.578 28 C 0.057 3.943 29 H 0.264 0.736 30 H 0.031 0.969 31 H -0.010 1.010 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.085 0.915 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -19.728 -11.398 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.550 4.550 8 H 0.096 0.904 9 C 0.002 3.998 10 N -0.187 5.187 11 C -0.118 4.118 12 C -0.114 4.114 13 C -0.093 4.093 14 C -0.133 4.133 15 C -0.087 4.087 16 N -0.243 5.243 17 C -0.006 4.006 18 C 0.034 3.966 19 N -0.196 5.196 20 C -0.071 4.071 21 C -0.083 4.083 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.064 4.064 26 N -0.209 5.209 27 H 0.260 0.740 28 C -0.071 4.071 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.008 0.992 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.104 0.896 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.454 -19.470 -10.990 26.622 hybrid contribution -1.453 1.172 -0.371 1.903 sum 13.001 -18.298 -11.361 25.157 Atomic orbital electron populations 1.69895 1.06159 1.26929 1.50819 1.24930 0.94767 0.98964 0.94699 0.86838 0.80403 0.83899 0.78491 1.20310 1.21061 1.19120 1.20953 0.88626 0.94715 1.50731 0.90429 1.20665 0.97602 0.86086 0.95466 1.68524 1.03205 1.18163 1.28818 1.23700 0.94039 0.96120 0.97935 1.22735 0.97218 0.96098 0.95381 1.23544 0.94140 0.98177 0.93440 1.22272 1.02932 0.91994 0.96092 1.23182 0.95663 0.97407 0.92448 1.63678 1.53395 1.07134 1.00053 1.20784 0.98829 0.88349 0.92590 1.23388 0.86092 0.90552 0.96539 1.70443 1.19805 1.10965 1.18409 1.19155 0.93644 0.90851 1.03482 1.20041 0.98338 0.91856 0.98110 1.20641 0.97245 0.95085 1.02156 1.20874 0.93430 0.99264 0.98904 1.19975 1.00576 0.89345 1.03338 1.18899 0.94445 0.89915 1.03110 1.43144 1.17026 1.07186 1.53553 0.73968 1.22718 1.00607 0.87489 0.96261 0.92605 0.95129 0.99222 0.90014 0.91869 0.91412 0.90415 0.90504 0.89788 0.93812 0.90673 0.92146 0.87054 0.85390 0.85441 0.85369 0.86025 0.89647 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.51 -14.39 9.39 -34.44 -0.32 -14.71 16 8 H 0.08 2.38 8.04 -52.49 -0.42 1.96 16 9 C 0.13 3.07 3.65 -4.98 -0.02 3.05 16 10 N -0.46 -9.35 6.25 -246.98 -1.54 -10.90 16 11 C 0.01 0.18 7.29 -3.32 -0.02 0.16 16 12 C -0.11 -1.55 0.97 -154.65 -0.15 -1.70 16 13 C 0.04 0.62 6.70 -3.31 -0.02 0.60 16 14 C -0.09 -1.17 6.41 -25.14 -0.16 -1.33 16 15 C 0.04 0.44 6.20 -2.10 -0.01 0.43 16 16 N -0.52 -5.92 5.17 -232.97 -1.20 -7.12 16 17 C 0.12 1.27 5.20 -4.98 -0.03 1.24 16 18 C 0.30 3.46 7.06 -154.82 -1.09 2.36 16 19 N -0.48 -6.53 11.27 -8.23 -0.09 -6.62 16 20 C 0.05 0.59 7.23 -84.70 -0.61 -0.02 16 21 C -0.06 -0.65 10.05 -39.61 -0.40 -1.05 16 22 C -0.13 -1.04 9.96 -39.97 -0.40 -1.44 16 23 C -0.11 -0.79 10.03 -39.52 -0.40 -1.19 16 24 C -0.11 -0.95 10.07 -39.50 -0.40 -1.35 16 25 C 0.05 0.50 7.31 -83.99 -0.61 -0.11 16 26 N -0.60 -5.76 6.23 -8.00 -0.05 -5.81 16 27 H 0.42 2.91 8.96 -40.82 -0.37 2.55 16 28 C 0.06 0.67 6.36 -3.32 -0.02 0.65 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 30 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 31 H -0.01 -0.23 7.14 -51.93 -0.37 -0.60 16 32 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 33 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 34 H 0.07 1.22 7.65 -51.93 -0.40 0.83 16 35 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 38 H 0.04 0.44 7.62 -51.93 -0.40 0.04 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.53 7.85 -51.93 -0.41 0.13 16 41 H 0.11 1.09 8.04 -51.93 -0.42 0.67 16 42 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 47 H 0.06 0.70 7.29 -51.93 -0.38 0.32 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -33.14 377.25 -13.19 -46.33 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.32 Total: 0.89 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -4.77 Total: -12.54 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -2.12 Total: -56.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.14 -13.19 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.307 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds