Wall clock time and date at job start Tue Mar 31 2020 14:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00349 * 2 1 4 4 H 1.48501 * 109.47533 * 269.99996 * 3 2 1 5 5 H 1.48507 * 109.47107 * 30.00272 * 3 2 1 6 6 H 1.48504 * 109.47219 * 150.00136 * 3 2 1 7 7 C 1.37884 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99716 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00053 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.48220 * 111.00156 * 169.99736 * 10 9 7 12 12 C 1.52563 * 85.73690 * 223.30468 * 11 10 9 13 13 C 1.48229 * 111.00271 * 70.33955 * 10 9 7 14 14 C 1.53860 * 115.91236 * 265.17771 * 12 11 10 15 15 C 1.55154 * 101.48390 * 196.17670 * 14 12 11 16 16 N 1.47963 * 104.97371 * 35.71253 * 15 14 12 17 17 C 1.46897 * 111.00014 * 213.86976 * 16 15 14 18 18 C 1.50701 * 109.46576 * 290.81636 * 17 16 15 19 19 N 1.30113 * 124.95353 * 274.69277 * 18 17 16 20 20 C 1.35784 * 109.64611 * 179.87357 * 19 18 17 21 21 C 1.39734 * 133.60044 * 180.11531 * 20 19 18 22 22 C 1.36602 * 119.88272 * 180.30235 * 21 20 19 23 23 C 1.38776 * 120.67466 * 359.97438 * 22 21 20 24 24 C 1.37860 * 120.44682 * 0.06512 * 23 22 21 25 25 C 1.38831 * 119.69048 * 359.91727 * 24 23 22 26 26 N 1.36041 * 124.94865 * 95.00626 * 18 17 16 27 27 H 0.96998 * 126.34688 * 359.92938 * 26 18 17 28 28 C 1.47786 * 108.54520 * 336.12372 * 16 15 14 29 29 H 0.97003 * 119.99746 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47317 * 59.99785 * 9 7 2 31 31 H 1.09001 * 109.46826 * 300.00298 * 9 7 2 32 32 H 1.09002 * 113.82981 * 109.10410 * 11 10 9 33 33 H 1.08997 * 113.94445 * 337.52162 * 11 10 9 34 34 H 1.08996 * 113.82673 * 22.49288 * 13 10 9 35 35 H 1.08994 * 113.83174 * 250.89637 * 13 10 9 36 36 H 1.09004 * 111.02310 * 314.22610 * 14 12 11 37 37 H 1.09000 * 111.02576 * 78.08594 * 14 12 11 38 38 H 1.08998 * 110.33920 * 276.84214 * 15 14 12 39 39 H 1.08999 * 110.33629 * 154.58280 * 15 14 12 40 40 H 1.08997 * 109.46829 * 50.81547 * 17 16 15 41 41 H 1.08997 * 109.46912 * 170.82050 * 17 16 15 42 42 H 1.08003 * 120.06144 * 0.27645 * 21 20 19 43 43 H 1.08011 * 119.66297 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.77605 * 180.02562 * 23 22 21 45 45 H 1.08003 * 120.14991 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.98836 * 121.28880 * 28 16 15 47 47 H 1.08999 * 109.98674 * 242.55845 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5792 -0.0013 11 6 5.4631 -2.6255 -0.2411 12 6 5.1568 -3.7861 -1.1829 13 6 3.7398 -3.2338 -1.3053 14 6 5.2786 -5.1946 -0.5759 15 6 5.3284 -6.0772 -1.8510 16 7 6.0861 -5.2784 -2.8395 17 6 5.5859 -5.5131 -4.2006 18 6 5.9354 -6.9149 -4.6293 19 7 7.0673 -7.2708 -5.1633 20 6 7.0497 -8.6030 -5.4251 21 6 7.9774 -9.4883 -5.9803 22 6 7.6569 -10.8085 -6.1237 23 6 6.4163 -11.2835 -5.7224 24 6 5.4851 -10.4282 -5.1729 25 6 5.7932 -9.0832 -5.0191 26 7 5.1111 -7.9916 -4.5200 27 1 4.2112 -7.9923 -4.1579 28 6 5.9761 -3.8508 -2.4737 29 1 -0.4850 0.8401 0.0004 30 1 3.8746 -0.6810 0.8904 31 1 3.8752 -0.6797 -0.8894 32 1 6.0443 -2.9115 0.6355 33 1 5.8571 -1.7425 -0.7441 34 1 3.6096 -2.5342 -2.1309 35 1 2.9641 -3.9985 -1.2665 36 1 6.1966 -5.2927 0.0036 37 1 4.4070 -5.4349 0.0328 38 1 4.3201 -6.2735 -2.2155 39 1 5.8464 -7.0136 -1.6436 40 1 4.5033 -5.3875 -4.2165 41 1 6.0446 -4.7990 -4.8844 42 1 8.9459 -9.1294 -6.2960 43 1 8.3765 -11.4896 -6.5537 44 1 6.1784 -12.3301 -5.8421 45 1 4.5209 -10.8029 -4.8626 46 1 6.9683 -3.4314 -2.3067 47 1 5.4682 -3.3011 -3.2662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277938607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:31 Heat of formation + Delta-G solvation = 96.524623 kcal Electronic energy + Delta-G solvation = -26850.960826 eV Core-core repulsion = 23227.323479 eV Total energy + Delta-G solvation = -3623.637347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.12371 -41.72966 -38.79120 -37.90694 -35.04338 -34.14117 -33.27307 -31.18955 -30.91677 -30.31586 -28.91939 -27.23903 -26.98058 -24.83758 -23.46570 -23.06958 -22.65486 -21.97595 -21.45039 -19.58868 -19.02771 -18.76795 -18.15997 -17.18785 -17.02300 -16.69361 -16.34031 -16.04785 -15.65566 -15.52672 -15.26836 -15.07636 -14.93846 -14.73442 -14.46655 -14.41924 -13.82009 -13.56969 -13.33699 -13.17855 -12.98941 -12.76072 -12.72568 -12.59409 -12.48101 -12.43660 -12.26682 -11.89092 -11.82015 -11.69739 -11.41858 -11.33456 -11.17468 -10.95194 -10.83600 -9.63941 -9.36565 -9.28489 -9.09270 -8.32938 -6.37241 -0.01249 0.58365 1.31627 1.34402 1.45158 1.70220 1.90901 2.31022 2.87213 2.99000 3.00622 3.07302 3.20310 3.34743 3.55487 3.65335 3.89165 4.05640 4.14402 4.19405 4.20664 4.28385 4.41080 4.45060 4.50276 4.52181 4.54389 4.59559 4.60764 4.66132 4.73278 4.81768 4.85232 4.89768 4.90083 5.03692 5.06329 5.15278 5.16888 5.27954 5.42786 5.45980 5.58053 5.60683 5.74361 5.82100 5.89539 5.99530 6.02924 6.39367 6.52307 6.68515 6.91634 7.27039 8.83693 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.002173 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.611800 B =12881.234919 C =13109.711457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.033 0.967 9 C 0.140 3.860 10 N -0.493 5.493 11 C 0.014 3.986 12 C -0.092 4.092 13 C 0.033 3.967 14 C -0.092 4.092 15 C 0.048 3.952 16 N -0.524 5.524 17 C 0.127 3.873 18 C 0.296 3.704 19 N -0.513 5.513 20 C 0.010 3.990 21 C -0.087 4.087 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.118 4.118 25 C 0.033 3.967 26 N -0.589 5.589 27 H 0.432 0.568 28 C 0.063 3.937 29 H 0.267 0.733 30 H 0.026 0.974 31 H -0.002 1.002 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.144 0.856 46 H 0.094 0.906 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.418 -20.686 -12.099 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.012 3.988 10 N -0.215 5.215 11 C -0.115 4.115 12 C -0.094 4.094 13 C -0.096 4.096 14 C -0.130 4.130 15 C -0.079 4.079 16 N -0.249 5.249 17 C -0.003 4.003 18 C 0.027 3.973 19 N -0.235 5.235 20 C -0.108 4.108 21 C -0.106 4.106 22 C -0.144 4.144 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.077 4.077 26 N -0.202 5.202 27 H 0.273 0.727 28 C -0.064 4.064 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.016 0.984 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.148 0.852 43 H 0.174 0.826 44 H 0.179 0.821 45 H 0.162 0.838 46 H 0.112 0.888 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.238 -20.456 -11.690 28.614 hybrid contribution -2.045 1.281 -0.172 2.419 sum 14.193 -19.174 -11.862 26.642 Atomic orbital electron populations 1.70053 1.08163 1.28191 1.52351 1.25902 0.95648 1.03296 0.94212 0.85684 0.79406 0.78420 0.79267 1.18939 1.20744 1.17345 1.21191 0.91131 0.93122 1.50300 0.94872 1.20427 0.94522 0.88551 0.95318 1.68450 1.06336 1.15949 1.30760 1.23802 0.91283 0.97291 0.99126 1.22502 0.94575 0.96129 0.96161 1.23526 0.96382 0.97779 0.91916 1.22252 1.02847 0.91280 0.96638 1.23108 0.96139 0.97005 0.91668 1.63675 1.53821 1.06754 1.00668 1.20819 0.99632 0.87976 0.91877 1.23466 0.86060 0.91147 0.96586 1.70359 1.21225 1.12116 1.19755 1.19574 0.95212 0.90900 1.05088 1.20293 0.98471 0.92803 0.99050 1.21027 0.98044 0.94492 1.00865 1.21338 0.92745 1.00694 0.97216 1.20358 1.01894 0.88510 1.03133 1.19208 0.94146 0.90907 1.03456 1.43067 1.17316 1.06607 1.53174 0.72657 1.22655 1.00578 0.88001 0.95196 0.92384 0.95608 0.98442 0.88660 0.90947 0.92275 0.91462 0.89650 0.90852 0.92970 0.90645 0.90737 0.86766 0.85230 0.82615 0.82118 0.83810 0.88811 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.01 0.40 5.47 84.66 0.46 0.86 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.51 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.52 -29.94 9.39 25.60 0.24 -29.70 16 8 H 0.03 2.14 8.04 -2.91 -0.02 2.12 16 9 C 0.14 6.60 3.65 85.56 0.31 6.91 16 10 N -0.49 -19.70 6.25 -935.29 -5.85 -25.55 16 11 C 0.01 0.42 7.29 85.90 0.63 1.04 16 12 C -0.09 -2.40 0.97 -52.11 -0.05 -2.45 16 13 C 0.03 1.14 6.70 85.91 0.58 1.72 16 14 C -0.09 -2.14 6.41 31.62 0.20 -1.94 16 15 C 0.05 0.99 6.20 86.84 0.54 1.52 16 16 N -0.52 -11.20 5.17 -890.99 -4.60 -15.80 16 17 C 0.13 2.44 5.20 85.56 0.44 2.89 16 18 C 0.30 6.63 7.06 137.92 0.97 7.60 16 19 N -0.51 -14.20 11.27 -179.96 -2.03 -16.23 16 20 C 0.01 0.26 7.23 39.45 0.29 0.54 16 21 C -0.09 -1.73 10.05 22.25 0.22 -1.51 16 22 C -0.12 -1.71 9.96 22.02 0.22 -1.49 16 23 C -0.10 -1.22 10.03 22.31 0.22 -1.00 16 24 C -0.12 -1.78 10.07 22.32 0.22 -1.55 16 25 C 0.03 0.69 7.31 38.86 0.28 0.97 16 26 N -0.59 -10.91 6.23 -179.22 -1.12 -12.02 16 27 H 0.43 5.52 8.96 -92.71 -0.83 4.69 16 28 C 0.06 1.38 6.36 86.14 0.55 1.93 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 31 H 0.00 -0.10 7.14 -2.39 -0.02 -0.11 16 32 H 0.10 2.59 8.12 -2.39 -0.02 2.57 16 33 H 0.07 2.05 7.80 -2.39 -0.02 2.03 16 34 H 0.06 2.14 7.65 -2.39 -0.02 2.12 16 35 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 36 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 38 H 0.05 0.98 7.62 -2.39 -0.02 0.96 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.22 7.85 -2.39 -0.02 1.20 16 41 H 0.11 2.13 8.04 -2.39 -0.02 2.11 16 42 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.16 1.17 8.06 -2.90 -0.02 1.15 16 44 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 46 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 47 H 0.07 1.41 7.29 -2.39 -0.02 1.39 16 Total: -1.00 -74.06 377.25 -4.99 -79.05 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.09 Total: 17.38 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 6.33 Total: -13.65 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -13.30 Total: -128.29 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -74.06 -4.99 -79.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.579 kcal (2) G-P(sol) polarization free energy of solvation -74.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds