Wall clock time and date at job start Tue Mar 31 2020 14:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99632 * 2 1 4 4 H 1.48489 * 109.47120 * 270.00363 * 3 2 1 5 5 H 1.48500 * 109.47008 * 30.00291 * 3 2 1 6 6 H 1.48497 * 109.46777 * 150.00083 * 3 2 1 7 7 C 1.37871 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99994 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.46951 * 110.99770 * 294.81089 * 10 9 7 12 12 C 1.55315 * 108.85897 * 179.97438 * 11 10 9 13 13 H 1.08999 * 112.42064 * 187.28768 * 12 11 10 14 14 C 1.54695 * 108.29012 * 312.80821 * 12 11 10 15 15 C 1.54323 * 104.72490 * 86.66414 * 14 12 11 16 16 C 1.54691 * 104.72198 * 359.97438 * 15 14 12 17 17 H 1.09010 * 112.41933 * 147.83645 * 16 15 14 18 18 C 1.46952 * 111.00417 * 169.99846 * 10 9 7 19 19 N 1.48863 * 106.15109 * 63.96232 * 12 11 10 20 20 C 1.46899 * 111.00208 * 169.81835 * 19 12 11 21 21 C 1.50703 * 109.47107 * 283.88526 * 20 19 12 22 22 N 1.30112 * 124.94997 * 274.69292 * 21 20 19 23 23 C 1.35784 * 109.64431 * 179.89329 * 22 21 20 24 24 C 1.39739 * 133.60005 * 180.13351 * 23 22 21 25 25 C 1.36601 * 119.88248 * 180.29805 * 24 23 22 26 26 C 1.38773 * 120.67229 * 359.95124 * 25 24 23 27 27 C 1.37855 * 120.45061 * 0.02699 * 26 25 24 28 28 C 1.38829 * 119.69029 * 359.97438 * 27 26 25 29 29 N 1.36034 * 124.95020 * 95.00110 * 21 20 19 30 30 H 0.96998 * 126.34944 * 359.97438 * 29 21 20 31 31 H 0.97000 * 120.00495 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47490 * 59.99823 * 9 7 2 33 33 H 1.09004 * 109.46881 * 300.00018 * 9 7 2 34 34 H 1.09008 * 109.55276 * 300.06954 * 11 10 9 35 35 H 1.09003 * 109.56389 * 60.27356 * 11 10 9 36 36 H 1.09004 * 110.38999 * 205.47492 * 14 12 11 37 37 H 1.08996 * 110.38992 * 327.73506 * 14 12 11 38 38 H 1.09000 * 110.38761 * 241.19068 * 15 14 12 39 39 H 1.08995 * 110.38933 * 118.81049 * 15 14 12 40 40 H 1.09004 * 109.55316 * 59.92287 * 18 10 9 41 41 H 1.08997 * 109.55268 * 299.61747 * 18 10 9 42 42 H 1.09002 * 109.47043 * 43.88505 * 20 19 12 43 43 H 1.09001 * 109.47354 * 163.88567 * 20 19 12 44 44 H 1.07999 * 120.06041 * 0.27995 * 24 23 22 45 45 H 1.08005 * 119.66362 * 179.97438 * 25 24 23 46 46 H 1.08005 * 119.77714 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.15543 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0014 -2.5789 -0.0022 11 6 3.6347 -3.2681 1.2427 12 6 4.1745 -4.7234 1.1887 13 1 3.8274 -5.3270 2.0273 14 6 3.8025 -5.3285 -0.1856 15 6 4.9543 -4.9097 -1.1234 16 6 5.9129 -4.0907 -0.2271 17 1 6.9556 -4.1987 -0.5262 18 6 5.4506 -2.6248 -0.2411 19 7 5.6584 -4.6132 1.1436 20 6 6.2898 -5.9260 1.3328 21 6 6.2238 -6.3101 2.7886 22 7 7.0863 -5.9507 3.6941 23 6 6.7268 -6.4672 4.8974 24 6 7.2782 -6.3976 6.1794 25 6 6.6720 -7.0469 7.2172 26 6 5.5097 -7.7772 7.0132 27 6 4.9477 -7.8593 5.7571 28 6 5.5497 -7.2060 4.6903 29 7 5.2571 -7.0879 3.3463 30 1 4.5021 -7.4856 2.8852 31 1 -0.4851 0.8400 0.0004 32 1 3.8753 -0.6802 0.8888 33 1 3.8745 -0.6798 -0.8912 34 1 4.0714 -2.7433 2.0925 35 1 2.5495 -3.2864 1.3438 36 1 3.7432 -6.4148 -0.1187 37 1 2.8559 -4.9183 -0.5373 38 1 4.5755 -4.2919 -1.9375 39 1 5.4618 -5.7899 -1.5179 40 1 5.9674 -2.0717 0.5432 41 1 5.6748 -2.1808 -1.2110 42 1 5.7640 -6.6715 0.7362 43 1 7.3319 -5.8770 1.0169 44 1 8.1822 -5.8317 6.3495 45 1 7.1015 -6.9911 8.2066 46 1 5.0423 -8.2846 7.8441 47 1 4.0432 -8.4293 5.6037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:42 Heat of formation + Delta-G solvation = 99.807994 kcal Electronic energy + Delta-G solvation = -27882.689645 eV Core-core repulsion = 24259.194676 eV Total energy + Delta-G solvation = -3623.494969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.26667 -40.35756 -37.49885 -35.46215 -33.26836 -32.57705 -31.71482 -30.94413 -30.10320 -29.31737 -28.33202 -26.38105 -24.24401 -23.85929 -22.54488 -22.08741 -21.12188 -20.75048 -20.20369 -18.57230 -17.93781 -17.32950 -16.86450 -16.49063 -15.70414 -15.28817 -15.12176 -14.54162 -14.44468 -14.15256 -14.06762 -14.03201 -13.57511 -13.48279 -12.95740 -12.75155 -12.46393 -12.28796 -12.17683 -12.04730 -11.96087 -11.67738 -11.57652 -11.15794 -10.98568 -10.80554 -10.69107 -10.58573 -10.41354 -10.14209 -10.04922 -10.02656 -9.84424 -9.27825 -8.60691 -8.57138 -8.47661 -8.23691 -7.33478 -6.06601 -4.03898 0.80424 1.37873 2.58972 2.74811 3.28405 3.36199 3.39292 3.72528 3.93338 4.06780 4.41696 4.42793 4.71170 4.81529 4.83110 4.88290 4.94517 5.00925 5.12514 5.18163 5.26226 5.29076 5.32094 5.35718 5.43464 5.46449 5.58446 5.62564 5.77745 5.86665 5.90778 5.96478 6.13257 6.23591 6.26675 6.34062 6.35243 6.38801 6.45609 6.55036 6.62234 6.73012 6.80446 6.91338 6.98092 7.02194 7.18791 7.58778 7.82753 7.90351 8.05317 8.64444 9.00491 9.55678 11.06372 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003089 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.880247 B = 9063.311184 C = 9831.054465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.082 3.918 12 C 0.056 3.944 13 H 0.082 0.918 14 C -0.132 4.132 15 C -0.132 4.132 16 C 0.066 3.934 17 H 0.095 0.905 18 C 0.064 3.936 19 N -0.498 5.498 20 C 0.118 3.882 21 C 0.305 3.695 22 N -0.477 5.477 23 C 0.048 3.952 24 C -0.064 4.064 25 C -0.131 4.131 26 C -0.106 4.106 27 C -0.111 4.111 28 C 0.046 3.954 29 N -0.598 5.598 30 H 0.420 0.580 31 H 0.263 0.737 32 H -0.011 1.011 33 H 0.024 0.976 34 H 0.031 0.969 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.021 -17.911 7.063 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.047 4.047 12 C -0.053 4.053 13 H 0.100 0.900 14 C -0.172 4.172 15 C -0.171 4.171 16 C -0.043 4.043 17 H 0.113 0.887 18 C -0.065 4.065 19 N -0.221 5.221 20 C -0.012 4.012 21 C 0.038 3.962 22 N -0.197 5.197 23 C -0.070 4.070 24 C -0.084 4.084 25 C -0.151 4.151 26 C -0.125 4.125 27 C -0.132 4.132 28 C -0.064 4.064 29 N -0.210 5.210 30 H 0.259 0.741 31 H 0.073 0.927 32 H 0.006 0.994 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.125 0.875 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.643 -17.135 7.026 23.003 hybrid contribution -0.745 0.152 -0.013 0.761 sum 12.898 -16.983 7.014 22.450 Atomic orbital electron populations 1.69889 1.06128 1.26844 1.51164 1.24891 0.94719 0.98867 0.94826 0.86872 0.80385 0.84040 0.78555 1.20178 1.21252 1.19217 1.21007 0.88716 0.94603 1.50293 0.90250 1.20140 0.96968 0.84083 0.95109 1.61876 1.10174 1.18544 1.34357 1.22318 1.00901 0.90524 0.90936 1.23660 0.86883 0.98206 0.96506 0.89977 1.22678 1.01070 0.98126 0.95278 1.22710 0.95968 0.98928 0.99530 1.23249 0.98681 0.95877 0.86449 0.88706 1.22184 0.90148 0.93680 1.00502 1.65757 1.08325 1.20274 1.27787 1.20641 1.02396 0.92583 0.85545 1.23406 0.85285 0.90967 0.96590 1.70436 1.27297 1.23946 0.98061 1.19152 0.94624 0.99614 0.93640 1.20037 0.99896 0.99205 0.89248 1.20628 0.96611 0.99117 0.98782 1.20860 0.96203 0.99605 0.95874 1.19963 1.00712 1.01726 0.90800 1.18893 0.99171 1.03471 0.84842 1.43151 1.25667 1.44848 1.07329 0.74086 0.92688 0.99358 0.95800 0.95067 0.89313 0.93450 0.89284 0.89686 0.92997 0.94770 0.90830 0.92225 0.87487 0.85434 0.85482 0.85401 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.51 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.51 -14.11 9.07 -34.44 -0.31 -14.43 16 8 H 0.08 2.38 7.29 -52.49 -0.38 2.00 16 9 C 0.16 3.90 3.80 -4.97 -0.02 3.88 16 10 N -0.52 -10.46 3.68 -233.98 -0.86 -11.32 16 11 C 0.08 1.56 4.91 -2.57 -0.01 1.55 16 12 C 0.06 0.82 3.65 -64.50 -0.24 0.59 16 13 H 0.08 1.12 7.28 -51.93 -0.38 0.75 16 14 C -0.13 -1.76 5.41 -25.15 -0.14 -1.90 16 15 C -0.13 -1.66 5.58 -25.15 -0.14 -1.80 16 16 C 0.07 0.87 3.70 -65.35 -0.24 0.63 16 17 H 0.09 1.06 8.02 -51.92 -0.42 0.64 16 18 C 0.06 1.06 5.05 -3.42 -0.02 1.04 16 19 N -0.50 -6.89 4.98 -213.00 -1.06 -7.95 16 20 C 0.12 1.33 5.27 -4.98 -0.03 1.31 16 21 C 0.31 3.94 7.05 -154.82 -1.09 2.85 16 22 N -0.48 -7.31 11.27 -8.23 -0.09 -7.41 16 23 C 0.05 0.68 7.23 -84.70 -0.61 0.07 16 24 C -0.06 -0.76 10.05 -39.61 -0.40 -1.16 16 25 C -0.13 -1.23 9.96 -39.97 -0.40 -1.63 16 26 C -0.11 -0.95 10.03 -39.52 -0.40 -1.34 16 27 C -0.11 -1.11 10.07 -39.50 -0.40 -1.51 16 28 C 0.05 0.57 7.31 -83.99 -0.61 -0.04 16 29 N -0.60 -6.63 5.81 -8.00 -0.05 -6.68 16 30 H 0.42 3.44 8.96 -40.82 -0.37 3.08 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H -0.01 -0.28 7.19 -51.93 -0.37 -0.65 16 33 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 34 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.09 1.87 6.82 -51.93 -0.35 1.52 16 36 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 37 H 0.09 1.41 7.87 -51.93 -0.41 1.01 16 38 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 42 H 0.06 0.56 6.73 -51.93 -0.35 0.21 16 43 H 0.11 1.12 7.99 -51.93 -0.42 0.70 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -32.78 365.91 -12.78 -45.56 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.19 Total: 2.04 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -5.15 Total: -10.03 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -1.29 Total: -59.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.78 -12.78 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.367 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds