Wall clock time and date at job start Tue Mar 31 2020 14:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99632 * 2 1 4 4 H 1.48489 * 109.47120 * 270.00363 * 3 2 1 5 5 H 1.48500 * 109.47008 * 30.00291 * 3 2 1 6 6 H 1.48497 * 109.46777 * 150.00083 * 3 2 1 7 7 C 1.37871 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99994 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.46951 * 110.99770 * 294.81089 * 10 9 7 12 12 C 1.55315 * 108.85897 * 179.97438 * 11 10 9 13 13 H 1.08999 * 112.42064 * 187.28768 * 12 11 10 14 14 C 1.54695 * 108.29012 * 312.80821 * 12 11 10 15 15 C 1.54323 * 104.72490 * 86.66414 * 14 12 11 16 16 C 1.54691 * 104.72198 * 359.97438 * 15 14 12 17 17 H 1.09010 * 112.41933 * 147.83645 * 16 15 14 18 18 C 1.46952 * 111.00417 * 169.99846 * 10 9 7 19 19 N 1.48863 * 106.15109 * 63.96232 * 12 11 10 20 20 C 1.46899 * 111.00208 * 169.81835 * 19 12 11 21 21 C 1.50703 * 109.47107 * 283.88526 * 20 19 12 22 22 N 1.30112 * 124.94997 * 274.69292 * 21 20 19 23 23 C 1.35784 * 109.64431 * 179.89329 * 22 21 20 24 24 C 1.39739 * 133.60005 * 180.13351 * 23 22 21 25 25 C 1.36601 * 119.88248 * 180.29805 * 24 23 22 26 26 C 1.38773 * 120.67229 * 359.95124 * 25 24 23 27 27 C 1.37855 * 120.45061 * 0.02699 * 26 25 24 28 28 C 1.38829 * 119.69029 * 359.97438 * 27 26 25 29 29 N 1.36034 * 124.95020 * 95.00110 * 21 20 19 30 30 H 0.96998 * 126.34944 * 359.97438 * 29 21 20 31 31 H 0.97000 * 120.00495 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47490 * 59.99823 * 9 7 2 33 33 H 1.09004 * 109.46881 * 300.00018 * 9 7 2 34 34 H 1.09008 * 109.55276 * 300.06954 * 11 10 9 35 35 H 1.09003 * 109.56389 * 60.27356 * 11 10 9 36 36 H 1.09004 * 110.38999 * 205.47492 * 14 12 11 37 37 H 1.08996 * 110.38992 * 327.73506 * 14 12 11 38 38 H 1.09000 * 110.38761 * 241.19068 * 15 14 12 39 39 H 1.08995 * 110.38933 * 118.81049 * 15 14 12 40 40 H 1.09004 * 109.55316 * 59.92287 * 18 10 9 41 41 H 1.08997 * 109.55268 * 299.61747 * 18 10 9 42 42 H 1.09002 * 109.47043 * 43.88505 * 20 19 12 43 43 H 1.09001 * 109.47354 * 163.88567 * 20 19 12 44 44 H 1.07999 * 120.06041 * 0.27995 * 24 23 22 45 45 H 1.08005 * 119.66362 * 179.97438 * 25 24 23 46 46 H 1.08005 * 119.77714 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.15543 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0014 -2.5789 -0.0022 11 6 3.6347 -3.2681 1.2427 12 6 4.1745 -4.7234 1.1887 13 1 3.8274 -5.3270 2.0273 14 6 3.8025 -5.3285 -0.1856 15 6 4.9543 -4.9097 -1.1234 16 6 5.9129 -4.0907 -0.2271 17 1 6.9556 -4.1987 -0.5262 18 6 5.4506 -2.6248 -0.2411 19 7 5.6584 -4.6132 1.1436 20 6 6.2898 -5.9260 1.3328 21 6 6.2238 -6.3101 2.7886 22 7 7.0863 -5.9507 3.6941 23 6 6.7268 -6.4672 4.8974 24 6 7.2782 -6.3976 6.1794 25 6 6.6720 -7.0469 7.2172 26 6 5.5097 -7.7772 7.0132 27 6 4.9477 -7.8593 5.7571 28 6 5.5497 -7.2060 4.6903 29 7 5.2571 -7.0879 3.3463 30 1 4.5021 -7.4856 2.8852 31 1 -0.4851 0.8400 0.0004 32 1 3.8753 -0.6802 0.8888 33 1 3.8745 -0.6798 -0.8912 34 1 4.0714 -2.7433 2.0925 35 1 2.5495 -3.2864 1.3438 36 1 3.7432 -6.4148 -0.1187 37 1 2.8559 -4.9183 -0.5373 38 1 4.5755 -4.2919 -1.9375 39 1 5.4618 -5.7899 -1.5179 40 1 5.9674 -2.0717 0.5432 41 1 5.6748 -2.1808 -1.2110 42 1 5.7640 -6.6715 0.7362 43 1 7.3319 -5.8770 1.0169 44 1 8.1822 -5.8317 6.3495 45 1 7.1015 -6.9911 8.2066 46 1 5.0423 -8.2846 7.8441 47 1 4.0432 -8.4293 5.6037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:41 Heat of formation + Delta-G solvation = 76.969732 kcal Electronic energy + Delta-G solvation = -27883.679986 eV Core-core repulsion = 24259.194676 eV Total energy + Delta-G solvation = -3624.485311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.13516 -41.54783 -38.31131 -37.00303 -34.58355 -34.14445 -32.87886 -32.20457 -30.90553 -30.34683 -29.98139 -27.59315 -25.61336 -25.28742 -23.38401 -23.02427 -22.67893 -21.87681 -21.27141 -19.83386 -18.95662 -18.76954 -18.14973 -17.71952 -16.78107 -16.38911 -16.30467 -16.03760 -15.53674 -15.38858 -15.22338 -15.01903 -14.87536 -14.81247 -14.54702 -13.97633 -13.90637 -13.52969 -13.38478 -13.29617 -12.87745 -12.81097 -12.66561 -12.46522 -12.44454 -12.19292 -11.98404 -11.92797 -11.78138 -11.71429 -11.48550 -11.31862 -11.20417 -10.94806 -10.79357 -9.59943 -9.32514 -9.09666 -9.01124 -8.30191 -6.32754 -0.01109 0.57554 1.31897 1.33873 1.44270 1.70279 1.93638 2.32216 2.86791 3.00068 3.03483 3.11770 3.22112 3.62315 3.72571 3.82607 3.92544 4.09491 4.16078 4.19057 4.23534 4.26513 4.42236 4.47897 4.51375 4.53546 4.56865 4.60865 4.62826 4.71213 4.78243 4.89304 4.94431 4.99073 5.02778 5.12231 5.13460 5.14871 5.30317 5.43952 5.49544 5.52383 5.57542 5.59352 5.78085 5.88045 5.98650 6.05768 6.35477 6.41793 6.65294 6.72886 6.92972 7.30990 8.86069 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003089 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.880247 B = 9063.311184 C = 9831.054465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.943 3.057 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.511 4.511 8 H 0.041 0.959 9 C 0.172 3.828 10 N -0.527 5.527 11 C 0.085 3.915 12 C 0.070 3.930 13 H 0.091 0.909 14 C -0.128 4.128 15 C -0.126 4.126 16 C 0.074 3.926 17 H 0.129 0.871 18 C 0.059 3.941 19 N -0.515 5.515 20 C 0.125 3.875 21 C 0.297 3.703 22 N -0.517 5.517 23 C 0.009 3.991 24 C -0.089 4.089 25 C -0.125 4.125 26 C -0.102 4.102 27 C -0.118 4.118 28 C 0.032 3.968 29 N -0.589 5.589 30 H 0.433 0.567 31 H 0.266 0.734 32 H -0.025 1.025 33 H 0.031 0.969 34 H 0.005 0.995 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.156 0.844 46 H 0.162 0.838 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.850 -19.702 7.179 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.767 3.233 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.045 3.955 10 N -0.251 5.251 11 C -0.044 4.044 12 C -0.039 4.039 13 H 0.109 0.891 14 C -0.168 4.168 15 C -0.165 4.165 16 C -0.034 4.034 17 H 0.147 0.853 18 C -0.069 4.069 19 N -0.239 5.239 20 C -0.005 4.005 21 C 0.029 3.971 22 N -0.239 5.239 23 C -0.109 4.109 24 C -0.109 4.109 25 C -0.145 4.145 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.079 4.079 29 N -0.202 5.202 30 H 0.274 0.726 31 H 0.075 0.925 32 H -0.007 1.007 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.174 0.826 46 H 0.179 0.821 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.479 -18.958 7.132 25.493 hybrid contribution -1.352 0.623 0.071 1.490 sum 14.127 -18.335 7.203 24.241 Atomic orbital electron populations 1.70034 1.07949 1.28025 1.52714 1.25784 0.95565 1.02910 0.94491 0.85769 0.79111 0.79048 0.79348 1.18586 1.20799 1.18332 1.21213 0.90853 0.93259 1.49594 0.94062 1.19902 0.94397 0.86645 0.94548 1.61800 1.12778 1.15996 1.34556 1.22207 0.98855 0.93697 0.89668 1.23441 0.87852 0.94762 0.97887 0.89077 1.22636 0.99854 1.00022 0.94249 1.22680 0.95450 0.99905 0.98451 1.23267 1.00511 0.93185 0.86423 0.85350 1.22345 0.87416 0.96748 1.00436 1.65601 1.07330 1.22575 1.28366 1.20725 1.03202 0.91583 0.84956 1.23654 0.85378 0.91104 0.97003 1.70353 1.28964 1.25385 0.99150 1.19586 0.96125 1.01014 0.94137 1.20295 1.00664 1.00501 0.89431 1.21020 0.96419 0.97697 0.99345 1.21336 0.95650 0.98677 0.96484 1.20368 1.01448 1.01479 0.90576 1.19214 0.99084 1.03838 0.85717 1.43075 1.25682 1.44424 1.07041 0.72591 0.92455 1.00701 0.95112 0.97688 0.92804 0.89865 0.92664 0.91561 0.89252 0.96225 0.89704 0.89342 0.86171 0.85377 0.82645 0.82063 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.01 0.58 5.47 84.65 0.46 1.05 16 3 Si 0.94 45.02 27.47 68.60 1.88 46.91 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 7 C -0.51 -29.73 9.07 25.60 0.23 -29.49 16 8 H 0.04 2.65 7.29 -2.91 -0.02 2.63 16 9 C 0.17 8.46 3.80 85.56 0.32 8.78 16 10 N -0.53 -21.57 3.68 -894.18 -3.29 -24.86 16 11 C 0.08 3.39 4.91 87.09 0.43 3.82 16 12 C 0.07 2.00 3.65 45.91 0.17 2.16 16 13 H 0.09 2.44 7.28 -2.39 -0.02 2.42 16 14 C -0.13 -3.21 5.41 31.62 0.17 -3.04 16 15 C -0.13 -2.80 5.58 31.62 0.18 -2.62 16 16 C 0.07 1.78 3.70 45.35 0.17 1.95 16 17 H 0.13 2.31 8.02 -2.38 -0.02 2.29 16 18 C 0.06 1.92 5.05 86.53 0.44 2.35 16 19 N -0.51 -13.37 4.98 -827.81 -4.12 -17.49 16 20 C 0.12 2.45 5.27 85.56 0.45 2.90 16 21 C 0.30 7.29 7.05 137.92 0.97 8.26 16 22 N -0.52 -15.81 11.27 -179.96 -2.03 -17.84 16 23 C 0.01 0.26 7.23 39.45 0.29 0.55 16 24 C -0.09 -2.09 10.05 22.25 0.22 -1.86 16 25 C -0.12 -2.11 9.96 22.01 0.22 -1.89 16 26 C -0.10 -1.54 10.03 22.31 0.22 -1.32 16 27 C -0.12 -2.11 10.07 22.32 0.22 -1.89 16 28 C 0.03 0.75 7.31 38.86 0.28 1.03 16 29 N -0.59 -12.23 5.81 -179.22 -1.04 -13.27 16 30 H 0.43 6.19 8.96 -92.71 -0.83 5.36 16 31 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 32 H -0.02 -1.27 7.19 -2.39 -0.02 -1.28 16 33 H 0.03 1.47 7.50 -2.38 -0.02 1.45 16 34 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 35 H 0.05 2.48 6.82 -2.39 -0.02 2.46 16 36 H 0.08 1.51 7.80 -2.38 -0.02 1.49 16 37 H 0.05 1.78 7.87 -2.39 -0.02 1.76 16 38 H 0.07 1.76 7.84 -2.39 -0.02 1.74 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 42 H 0.09 1.24 6.73 -2.39 -0.02 1.23 16 43 H 0.12 2.09 7.99 -2.39 -0.02 2.07 16 44 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 47 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -76.39 365.91 -2.76 -79.15 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.09 Total: 15.81 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.45 Total: -9.26 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -10.19 Total: -132.60 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -76.39 -2.76 -79.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.121 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds