Wall clock time and date at job start Tue Mar 31 2020 14:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.48470 * 110.99782 * 69.87394 * 10 9 7 12 12 C 1.54913 * 103.21276 * 200.05541 * 11 10 9 13 13 C 1.54416 * 102.98424 * 37.79706 * 12 11 10 14 14 H 1.09000 * 112.27403 * 100.51173 * 13 12 11 15 15 C 1.54233 * 108.97722 * 225.53991 * 13 12 11 16 16 N 1.48564 * 104.54938 * 136.84689 * 15 13 12 17 17 C 1.46896 * 110.99809 * 200.45522 * 16 15 13 18 18 C 1.50702 * 109.47331 * 69.87551 * 17 16 15 19 19 N 1.30110 * 124.94458 * 275.02454 * 18 17 16 20 20 C 1.35791 * 109.64112 * 179.97438 * 19 18 17 21 21 C 1.39736 * 133.60655 * 179.97438 * 20 19 18 22 22 C 1.36607 * 119.88698 * 179.97438 * 21 20 19 23 23 C 1.38778 * 120.67123 * 0.02562 * 22 21 20 24 24 C 1.37860 * 120.44896 * 0.02562 * 23 22 21 25 25 C 1.38831 * 119.68760 * 359.95187 * 24 23 22 26 26 N 1.36035 * 124.95056 * 94.71785 * 18 17 16 27 27 H 0.96996 * 126.34641 * 0.02562 * 26 18 17 28 28 C 1.48489 * 104.20951 * 320.00384 * 16 15 13 29 29 C 1.47881 * 111.00134 * 312.21187 * 10 9 7 30 30 H 1.09006 * 111.75932 * 23.05279 * 29 10 9 31 31 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 33 33 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 34 34 H 1.08996 * 110.67235 * 318.49053 * 11 10 9 35 35 H 1.09001 * 110.66616 * 81.62847 * 11 10 9 36 36 H 1.09006 * 110.70696 * 156.16430 * 12 11 10 37 37 H 1.08995 * 110.71695 * 279.24170 * 12 11 10 38 38 H 1.09002 * 110.42092 * 255.60691 * 15 13 12 39 39 H 1.08998 * 110.42602 * 17.95810 * 15 13 12 40 40 H 1.09003 * 109.46974 * 189.87682 * 17 16 15 41 41 H 1.08996 * 109.47519 * 309.87060 * 17 16 15 42 42 H 1.08004 * 120.05755 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.66436 * 180.02562 * 22 21 20 44 44 H 1.07999 * 119.77284 * 179.97438 * 23 22 21 45 45 H 1.07993 * 120.15325 * 179.97438 * 24 23 22 46 46 H 1.09003 * 110.37149 * 158.17160 * 28 16 15 47 47 H 1.08999 * 110.37364 * 280.50331 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.7293 -3.2393 -1.3007 12 6 3.8119 -4.7476 -0.9568 13 6 3.1669 -4.8198 0.4443 14 1 2.1336 -5.1646 0.4061 15 6 4.0443 -5.7021 1.3555 16 7 4.0991 -4.9675 2.6457 17 6 5.2520 -5.3978 3.4478 18 6 6.5236 -4.9135 2.7999 19 7 7.1583 -5.5339 1.8485 20 6 8.2611 -4.8238 1.4971 21 6 9.2749 -5.0211 0.5558 22 6 10.2784 -4.1023 0.4335 23 6 10.3038 -2.9706 1.2364 24 6 9.3148 -2.7558 2.1725 25 6 8.2867 -3.6784 2.3107 26 7 7.1717 -3.7612 3.1205 27 1 6.9017 -3.1182 3.7946 28 6 4.2290 -3.5426 2.2486 29 6 3.3029 -3.3882 1.0231 30 1 2.3339 -2.9619 1.2832 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6801 0.8912 33 1 3.8752 -0.6804 -0.8888 34 1 2.7342 -2.9812 -1.6627 35 1 4.4888 -2.9700 -2.0347 36 1 3.2423 -5.3383 -1.6743 37 1 4.8497 -5.0793 -0.9240 38 1 3.5846 -6.6806 1.4944 39 1 5.0437 -5.8087 0.9338 40 1 5.1731 -4.9790 4.4512 41 1 5.2667 -6.4859 3.5085 42 1 9.2651 -5.8985 -0.0739 43 1 11.0599 -4.2582 -0.2954 44 1 11.1043 -2.2539 1.1277 45 1 9.3395 -1.8737 2.7950 46 1 3.8988 -2.8915 3.0581 47 1 5.2600 -3.3172 1.9759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:39 Heat of formation + Delta-G solvation = 101.669059 kcal Electronic energy + Delta-G solvation = -28663.722974 eV Core-core repulsion = 25040.308706 eV Total energy + Delta-G solvation = -3623.414268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28156 -39.66579 -37.53326 -36.03692 -33.19431 -33.09746 -31.62050 -30.50179 -30.03180 -28.64218 -27.86731 -25.70485 -25.58527 -22.61838 -22.31172 -22.17844 -21.35663 -20.30361 -20.05775 -18.93829 -17.85562 -17.25551 -17.00086 -16.13359 -15.89819 -15.37638 -14.72342 -14.49253 -14.27206 -14.12018 -14.05627 -13.98545 -13.47115 -13.31448 -13.13532 -12.53374 -12.37151 -12.06193 -11.87643 -11.79013 -11.63614 -11.61279 -11.32745 -11.05329 -10.93252 -10.74933 -10.60078 -10.46259 -10.25864 -10.12960 -10.01652 -9.95416 -9.89612 -9.49637 -8.63875 -8.49437 -8.38982 -8.15143 -7.34637 -6.15139 -4.14948 0.89727 1.48744 2.71622 2.84492 3.23402 3.31284 3.34747 3.84403 3.95990 4.22088 4.35219 4.53659 4.77726 4.91585 4.97745 5.01796 5.10188 5.18390 5.21123 5.30956 5.38256 5.41446 5.43991 5.52410 5.67386 5.68491 5.87274 5.91095 5.96811 6.00021 6.10342 6.16246 6.32498 6.34014 6.42901 6.44498 6.47550 6.50744 6.52764 6.71021 6.80452 6.84682 6.88428 6.99929 7.05210 7.09134 7.26381 7.52398 7.85569 7.92396 8.04652 8.39348 8.86586 9.47506 10.97227 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.004209 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.968882 B = 6651.295409 C = 7565.354206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.511 5.511 11 C 0.041 3.959 12 C -0.117 4.117 13 C -0.100 4.100 14 H 0.084 0.916 15 C 0.032 3.968 16 N -0.495 5.495 17 C 0.116 3.884 18 C 0.264 3.736 19 N -0.485 5.485 20 C 0.050 3.950 21 C -0.065 4.065 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.110 4.110 25 C 0.051 3.949 26 N -0.593 5.593 27 H 0.422 0.578 28 C 0.036 3.964 29 C 0.068 3.932 30 H 0.102 0.898 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.140 -9.779 5.656 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.018 3.982 10 N -0.235 5.235 11 C -0.088 4.088 12 C -0.155 4.155 13 C -0.120 4.120 14 H 0.102 0.898 15 C -0.095 4.095 16 N -0.217 5.217 17 C -0.015 4.015 18 C -0.004 4.004 19 N -0.206 5.206 20 C -0.068 4.068 21 C -0.084 4.084 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.059 4.059 26 N -0.204 5.204 27 H 0.261 0.739 28 C -0.092 4.092 29 C -0.042 4.042 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.092 0.908 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.843 -10.523 5.693 20.660 hybrid contribution 0.242 2.390 0.015 2.402 sum 17.086 -8.133 5.708 19.765 Atomic orbital electron populations 1.69922 1.06313 1.27029 1.50174 1.24956 0.94661 0.99131 0.94125 0.86824 0.80382 0.83711 0.78637 1.20224 1.21268 1.18986 1.21672 0.90441 0.94726 1.52071 0.90266 1.20265 0.94800 0.86557 0.96623 1.65007 1.52443 1.03298 1.02701 1.23090 1.00574 0.92140 0.92951 1.22577 1.00150 0.97018 0.95759 1.22702 0.98949 0.95696 0.94655 0.89769 1.23415 1.00310 0.97020 0.88792 1.65777 1.33798 1.04915 1.17212 1.21248 0.80746 1.02316 0.97182 1.24684 0.96606 0.84087 0.95039 1.70425 1.06493 1.30173 1.13490 1.19088 0.95815 0.92940 0.98985 1.19998 0.92190 0.99721 0.96504 1.20608 0.99097 0.94780 1.00642 1.20845 0.98220 0.97852 0.95601 1.19964 0.93658 0.98277 1.01160 1.18891 0.91181 0.99449 0.96398 1.43225 1.21250 1.21857 1.34117 0.73937 1.23327 1.00161 0.87914 0.97801 1.23186 0.97566 0.91773 0.91651 0.88018 0.92637 0.95527 0.96020 0.92248 0.91777 0.91971 0.91534 0.90764 0.91047 0.88646 0.87433 0.85599 0.85583 0.85492 0.86132 0.90822 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.55 -15.00 7.53 -34.44 -0.26 -15.26 16 8 H 0.08 2.33 6.34 -52.49 -0.33 2.00 16 9 C 0.14 3.49 4.37 -4.98 -0.02 3.46 16 10 N -0.51 -10.77 4.99 -222.58 -1.11 -11.88 16 11 C 0.04 0.80 6.37 -1.95 -0.01 0.78 16 12 C -0.12 -1.94 6.59 -24.98 -0.16 -2.10 16 13 C -0.10 -1.71 4.02 -88.17 -0.35 -2.06 16 14 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.03 0.48 5.86 -2.26 -0.01 0.46 16 16 N -0.49 -7.09 5.65 -231.56 -1.31 -8.40 16 17 C 0.12 1.33 6.21 -4.98 -0.03 1.30 16 18 C 0.26 3.50 5.16 -154.82 -0.80 2.71 16 19 N -0.48 -7.37 9.92 -8.23 -0.08 -7.45 16 20 C 0.05 0.74 7.23 -84.70 -0.61 0.13 16 21 C -0.06 -0.81 10.05 -39.61 -0.40 -1.21 16 22 C -0.13 -1.38 9.96 -39.97 -0.40 -1.77 16 23 C -0.11 -1.08 10.03 -39.52 -0.40 -1.48 16 24 C -0.11 -1.26 10.07 -39.50 -0.40 -1.66 16 25 C 0.05 0.69 7.30 -83.99 -0.61 0.08 16 26 N -0.59 -7.23 5.28 -8.00 -0.04 -7.27 16 27 H 0.42 4.03 8.96 -40.82 -0.37 3.66 16 28 C 0.04 0.60 5.94 -2.22 -0.01 0.59 16 29 C 0.07 1.33 2.99 -65.38 -0.20 1.13 16 30 H 0.10 2.36 5.56 -51.93 -0.29 2.07 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 33 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 34 H 0.06 1.29 7.04 -51.93 -0.37 0.93 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.11 7.20 -51.93 -0.37 0.73 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.14 5.19 -51.93 -0.27 0.87 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 42 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 1.05 5.21 -51.93 -0.27 0.78 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -31.82 360.86 -12.62 -44.44 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.85 Total: 7.51 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -4.78 Total: -12.90 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -1.77 Total: -61.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.82 -12.62 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.110 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds