Wall clock time and date at job start Tue Mar 31 2020 14:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.48470 * 110.99782 * 69.87394 * 10 9 7 12 12 C 1.54913 * 103.21276 * 200.05541 * 11 10 9 13 13 C 1.54416 * 102.98424 * 37.79706 * 12 11 10 14 14 H 1.09000 * 112.27403 * 100.51173 * 13 12 11 15 15 C 1.54233 * 108.97722 * 225.53991 * 13 12 11 16 16 N 1.48564 * 104.54938 * 136.84689 * 15 13 12 17 17 C 1.46896 * 110.99809 * 200.45522 * 16 15 13 18 18 C 1.50702 * 109.47331 * 69.87551 * 17 16 15 19 19 N 1.30110 * 124.94458 * 275.02454 * 18 17 16 20 20 C 1.35791 * 109.64112 * 179.97438 * 19 18 17 21 21 C 1.39736 * 133.60655 * 179.97438 * 20 19 18 22 22 C 1.36607 * 119.88698 * 179.97438 * 21 20 19 23 23 C 1.38778 * 120.67123 * 0.02562 * 22 21 20 24 24 C 1.37860 * 120.44896 * 0.02562 * 23 22 21 25 25 C 1.38831 * 119.68760 * 359.95187 * 24 23 22 26 26 N 1.36035 * 124.95056 * 94.71785 * 18 17 16 27 27 H 0.96996 * 126.34641 * 0.02562 * 26 18 17 28 28 C 1.48489 * 104.20951 * 320.00384 * 16 15 13 29 29 C 1.47881 * 111.00134 * 312.21187 * 10 9 7 30 30 H 1.09006 * 111.75932 * 23.05279 * 29 10 9 31 31 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 33 33 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 34 34 H 1.08996 * 110.67235 * 318.49053 * 11 10 9 35 35 H 1.09001 * 110.66616 * 81.62847 * 11 10 9 36 36 H 1.09006 * 110.70696 * 156.16430 * 12 11 10 37 37 H 1.08995 * 110.71695 * 279.24170 * 12 11 10 38 38 H 1.09002 * 110.42092 * 255.60691 * 15 13 12 39 39 H 1.08998 * 110.42602 * 17.95810 * 15 13 12 40 40 H 1.09003 * 109.46974 * 189.87682 * 17 16 15 41 41 H 1.08996 * 109.47519 * 309.87060 * 17 16 15 42 42 H 1.08004 * 120.05755 * 359.97438 * 21 20 19 43 43 H 1.08001 * 119.66436 * 180.02562 * 22 21 20 44 44 H 1.07999 * 119.77284 * 179.97438 * 23 22 21 45 45 H 1.07993 * 120.15325 * 179.97438 * 24 23 22 46 46 H 1.09003 * 110.37149 * 158.17160 * 28 16 15 47 47 H 1.08999 * 110.37364 * 280.50331 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.7293 -3.2393 -1.3007 12 6 3.8119 -4.7476 -0.9568 13 6 3.1669 -4.8198 0.4443 14 1 2.1336 -5.1646 0.4061 15 6 4.0443 -5.7021 1.3555 16 7 4.0991 -4.9675 2.6457 17 6 5.2520 -5.3978 3.4478 18 6 6.5236 -4.9135 2.7999 19 7 7.1583 -5.5339 1.8485 20 6 8.2611 -4.8238 1.4971 21 6 9.2749 -5.0211 0.5558 22 6 10.2784 -4.1023 0.4335 23 6 10.3038 -2.9706 1.2364 24 6 9.3148 -2.7558 2.1725 25 6 8.2867 -3.6784 2.3107 26 7 7.1717 -3.7612 3.1205 27 1 6.9017 -3.1182 3.7946 28 6 4.2290 -3.5426 2.2486 29 6 3.3029 -3.3882 1.0231 30 1 2.3339 -2.9619 1.2832 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6801 0.8912 33 1 3.8752 -0.6804 -0.8888 34 1 2.7342 -2.9812 -1.6627 35 1 4.4888 -2.9700 -2.0347 36 1 3.2423 -5.3383 -1.6743 37 1 4.8497 -5.0793 -0.9240 38 1 3.5846 -6.6806 1.4944 39 1 5.0437 -5.8087 0.9338 40 1 5.1731 -4.9790 4.4512 41 1 5.2667 -6.4859 3.5085 42 1 9.2651 -5.8985 -0.0739 43 1 11.0599 -4.2582 -0.2954 44 1 11.1043 -2.2539 1.1277 45 1 9.3395 -1.8737 2.7950 46 1 3.8988 -2.8915 3.0581 47 1 5.2600 -3.3172 1.9759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:38 Heat of formation + Delta-G solvation = 78.831277 kcal Electronic energy + Delta-G solvation = -28664.713294 eV Core-core repulsion = 25040.308706 eV Total energy + Delta-G solvation = -3624.404588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22072 -41.06880 -38.52770 -37.33337 -35.00285 -34.12847 -33.34515 -31.73407 -30.90918 -29.83980 -29.44933 -27.34561 -26.77252 -24.09649 -23.50880 -23.23765 -22.41124 -21.80160 -21.25348 -20.52407 -19.02584 -18.75950 -18.09332 -17.51640 -17.11278 -16.56012 -16.27915 -15.83025 -15.49342 -15.36560 -15.23151 -14.95530 -14.83160 -14.74161 -14.54436 -14.31548 -13.82125 -13.46139 -13.16194 -12.90273 -12.82446 -12.66088 -12.61005 -12.46482 -12.43341 -12.21456 -11.96451 -11.91993 -11.79302 -11.69343 -11.67191 -11.50853 -11.39926 -10.96390 -10.81035 -9.67131 -9.29451 -9.14425 -9.06835 -8.33842 -6.38303 0.01396 0.61203 1.31192 1.32407 1.43824 1.77267 1.96764 2.30121 2.88720 2.95481 3.00478 3.19207 3.36917 3.57741 3.66688 3.76417 3.93815 4.14300 4.17713 4.22176 4.27943 4.45197 4.47007 4.50858 4.53973 4.54973 4.60141 4.66677 4.69660 4.80924 4.82542 4.89728 4.93179 4.96320 5.01669 5.11101 5.15194 5.16645 5.22847 5.37908 5.46142 5.48556 5.59385 5.61178 5.67052 5.91011 6.00416 6.06133 6.25302 6.31330 6.41613 6.67715 6.90139 7.27613 8.81700 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.004209 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.968882 B = 6651.295409 C = 7565.354206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.545 4.545 8 H 0.043 0.957 9 C 0.155 3.845 10 N -0.508 5.508 11 C 0.037 3.963 12 C -0.103 4.103 13 C -0.101 4.101 14 H 0.080 0.920 15 C 0.043 3.957 16 N -0.494 5.494 17 C 0.117 3.883 18 C 0.258 3.742 19 N -0.511 5.511 20 C 0.015 3.985 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.103 4.103 24 C -0.121 4.121 25 C 0.034 3.966 26 N -0.588 5.588 27 H 0.432 0.568 28 C 0.049 3.951 29 C 0.061 3.939 30 H 0.058 0.942 31 H 0.266 0.734 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.140 0.860 46 H 0.072 0.928 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.881 -9.652 6.155 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.584 4.584 8 H 0.061 0.939 9 C 0.027 3.973 10 N -0.231 5.231 11 C -0.091 4.091 12 C -0.141 4.141 13 C -0.121 4.121 14 H 0.098 0.902 15 C -0.085 4.085 16 N -0.216 5.216 17 C -0.013 4.013 18 C -0.011 4.011 19 N -0.233 5.233 20 C -0.103 4.103 21 C -0.106 4.106 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.142 4.142 25 C -0.077 4.077 26 N -0.200 5.200 27 H 0.272 0.728 28 C -0.080 4.080 29 C -0.048 4.048 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.173 0.827 44 H 0.176 0.824 45 H 0.158 0.842 46 H 0.090 0.910 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.602 -10.409 6.206 23.046 hybrid contribution -0.586 2.278 -0.167 2.358 sum 19.017 -8.130 6.040 21.546 Atomic orbital electron populations 1.70062 1.08148 1.28112 1.51998 1.25834 0.95447 1.03070 0.93912 0.85762 0.79487 0.78900 0.79090 1.19437 1.20783 1.17393 1.21831 0.92160 0.93416 1.50952 0.93867 1.20073 0.92362 0.88598 0.96261 1.65067 1.51991 1.02235 1.03809 1.23134 0.99134 0.94307 0.92554 1.22496 1.00764 0.94912 0.95916 1.22707 0.99427 0.94526 0.95426 0.90188 1.23321 0.99407 0.97333 0.88441 1.65756 1.35609 1.03273 1.16952 1.21433 0.78912 1.03430 0.97523 1.24842 0.96948 0.84362 0.94914 1.70360 1.07239 1.31208 1.14454 1.19511 0.96542 0.93879 1.00351 1.20272 0.92704 1.00792 0.96786 1.21003 0.98856 0.94075 1.00691 1.21302 0.98386 0.98094 0.94450 1.20340 0.93396 0.98607 1.01828 1.19214 0.92004 0.99785 0.96665 1.43192 1.20916 1.21799 1.34138 0.72756 1.23096 0.98948 0.89662 0.96265 1.23109 0.96126 0.92812 0.92785 0.92405 0.92483 0.95691 0.96056 0.95235 0.90732 0.89982 0.90953 0.88699 0.91691 0.85936 0.85871 0.85166 0.82710 0.82360 0.84230 0.90965 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 2 C 0.02 0.91 5.47 84.65 0.46 1.38 16 3 Si 0.94 43.98 27.47 68.60 1.88 45.87 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.55 -30.73 7.53 25.60 0.19 -30.54 16 8 H 0.04 2.70 6.34 -2.91 -0.02 2.68 16 9 C 0.16 7.52 4.37 85.56 0.37 7.90 16 10 N -0.51 -21.60 4.99 -858.11 -4.28 -25.88 16 11 C 0.04 1.46 6.37 86.65 0.55 2.01 16 12 C -0.10 -3.34 6.59 31.73 0.21 -3.14 16 13 C -0.10 -3.43 4.02 -9.20 -0.04 -3.47 16 14 H 0.08 2.75 8.14 -2.39 -0.02 2.74 16 15 C 0.04 1.21 5.86 86.40 0.51 1.71 16 16 N -0.49 -13.47 5.65 -886.52 -5.01 -18.48 16 17 C 0.12 2.45 6.21 85.56 0.53 2.98 16 18 C 0.26 6.50 5.16 137.92 0.71 7.21 16 19 N -0.51 -15.12 9.92 -179.96 -1.78 -16.90 16 20 C 0.02 0.43 7.23 39.45 0.29 0.72 16 21 C -0.09 -2.07 10.05 22.25 0.22 -1.85 16 22 C -0.13 -2.34 9.96 22.02 0.22 -2.12 16 23 C -0.10 -1.81 10.03 22.31 0.22 -1.58 16 24 C -0.12 -2.51 10.07 22.32 0.22 -2.29 16 25 C 0.03 0.87 7.30 38.86 0.28 1.15 16 26 N -0.59 -13.57 5.28 -179.22 -0.95 -14.51 16 27 H 0.43 7.61 8.96 -92.71 -0.83 6.78 16 28 C 0.05 1.61 5.94 86.47 0.51 2.12 16 29 C 0.06 2.45 2.99 45.89 0.14 2.59 16 30 H 0.06 2.84 5.56 -2.38 -0.01 2.83 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 33 H 0.02 1.03 7.51 -2.39 -0.02 1.02 16 34 H 0.03 1.33 7.04 -2.39 -0.02 1.32 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.07 2.31 7.20 -2.39 -0.02 2.29 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 1.98 5.19 -2.39 -0.01 1.96 16 40 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.12 2.23 8.08 -2.39 -0.02 2.21 16 42 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.06 1.96 5.21 -2.39 -0.01 1.94 16 Total: -1.00 -71.18 360.86 -4.11 -75.29 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.11 Total: 27.83 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 5.61 Total: -15.22 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -11.72 Total: -133.76 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal Total: -71.18 -4.11 -75.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.118 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds