Wall clock time and date at job start Tue Mar 31 2020 14:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.47718 * 110.99892 * 73.61904 * 11 10 9 13 13 C 1.52273 * 87.55909 * 137.72862 * 12 11 10 14 14 C 1.47732 * 110.99502 * 170.00116 * 11 10 9 15 15 C 1.52689 * 122.13838 * 99.93463 * 13 12 11 16 16 N 1.48224 * 85.72432 * 104.12941 * 15 13 12 17 17 C 1.46894 * 111.00146 * 136.73713 * 16 15 13 18 18 C 1.50695 * 109.47308 * 70.28521 * 17 16 15 19 19 N 1.30110 * 124.95341 * 275.02470 * 18 17 16 20 20 C 1.35779 * 109.64603 * 179.97438 * 19 18 17 21 21 C 1.39743 * 133.60611 * 179.97438 * 20 19 18 22 22 C 1.36594 * 119.88792 * 180.02562 * 21 20 19 23 23 C 1.38779 * 120.67348 * 0.02562 * 22 21 20 24 24 C 1.37846 * 120.44512 * 359.97438 * 23 22 21 25 25 C 1.38828 * 119.69317 * 359.95702 * 24 23 22 26 26 N 1.36041 * 124.95122 * 94.71883 * 18 17 16 27 27 H 0.97001 * 126.34228 * 0.02562 * 26 18 17 28 28 C 1.48218 * 91.06856 * 23.71175 * 16 15 13 29 29 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 31 31 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 34 34 H 1.09008 * 113.53884 * 252.39989 * 12 11 10 35 35 H 1.08997 * 113.54272 * 23.05438 * 12 11 10 36 36 H 1.08996 * 113.53660 * 336.93687 * 14 11 10 37 37 H 1.09000 * 113.53495 * 107.52879 * 14 11 10 38 38 H 1.09001 * 113.83630 * 218.32860 * 15 13 12 39 39 H 1.08996 * 113.83375 * 349.93337 * 15 13 12 40 40 H 1.09009 * 109.46990 * 190.28476 * 17 16 15 41 41 H 1.08998 * 109.47296 * 310.28132 * 17 16 15 42 42 H 1.08005 * 120.05531 * 359.97438 * 21 20 19 43 43 H 1.08009 * 119.66405 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.77682 * 179.97438 * 23 22 21 45 45 H 1.08001 * 120.15354 * 179.97438 * 24 23 22 46 46 H 1.08997 * 113.83536 * 222.08727 * 28 16 15 47 47 H 1.09007 * 113.94515 * 90.49507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 0.9090 -5.1986 -1.3217 13 6 1.3587 -6.6449 -1.1649 14 6 2.4225 -6.0719 -0.2383 15 6 0.4027 -7.7490 -0.7194 16 7 0.3966 -8.1649 -2.1421 17 6 0.4985 -9.6252 -2.2642 18 6 -0.7855 -10.2593 -1.7948 19 7 -1.0673 -10.5438 -0.5568 20 6 -2.3021 -11.1042 -0.4869 21 6 -3.0826 -11.5882 0.5664 22 6 -4.3199 -12.1087 0.3134 23 6 -4.8134 -12.1635 -0.9825 24 6 -4.0611 -11.6920 -2.0370 25 6 -2.8019 -11.1582 -1.7989 26 7 -1.8213 -10.6124 -2.6029 27 1 -1.8625 -10.5024 -3.5658 28 6 1.7125 -7.5202 -2.3650 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8903 32 1 2.8721 -3.6042 -0.8894 33 1 2.8721 -3.6043 0.8905 34 1 -0.1744 -5.0790 -1.3387 35 1 1.4052 -4.6745 -2.1384 36 1 3.3422 -5.7920 -0.7520 37 1 2.6022 -6.6797 0.6484 38 1 0.8553 -8.4796 -0.0490 39 1 -0.5599 -7.3813 -0.3641 40 1 0.6753 -9.8913 -3.3064 41 1 1.3259 -9.9842 -1.6522 42 1 -2.7078 -11.5515 1.5786 43 1 -4.9202 -12.4814 1.1302 44 1 -5.7935 -12.5784 -1.1661 45 1 -4.4496 -11.7373 -3.0437 46 1 1.7810 -6.9723 -3.3047 47 1 2.5632 -8.1799 -2.1933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:24 Heat of formation + Delta-G solvation = 119.576566 kcal Electronic energy + Delta-G solvation = -26330.410372 eV Core-core repulsion = 22707.772632 eV Total energy + Delta-G solvation = -3622.637740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.14774 -42.13667 -39.04952 -38.09085 -35.48289 -34.14469 -33.19839 -31.72867 -30.89753 -29.39979 -27.70133 -27.22663 -27.03128 -25.39096 -23.62265 -23.32383 -22.71427 -21.74183 -21.55181 -19.17139 -18.81126 -18.55367 -18.16494 -17.12672 -16.88150 -16.83870 -16.55483 -16.23112 -15.88033 -15.52353 -15.37611 -15.19382 -14.87085 -14.78690 -14.34666 -14.12776 -13.89562 -13.52217 -13.35502 -13.08581 -12.91015 -12.83644 -12.69022 -12.62270 -12.47707 -12.42574 -12.07834 -11.76823 -11.65580 -11.58637 -11.48389 -11.29890 -11.06526 -10.97189 -10.57953 -9.88733 -9.69670 -9.33796 -9.10824 -8.21661 -6.34511 -0.02342 0.56592 1.38749 1.42803 1.50763 1.69110 1.94559 2.39109 2.78987 2.92972 3.03270 3.10957 3.12464 3.40381 3.56000 3.64045 3.88700 4.04447 4.15669 4.19640 4.27131 4.37052 4.39487 4.45938 4.47440 4.51194 4.53317 4.54537 4.56467 4.65789 4.71884 4.81013 4.85219 4.88579 4.99083 5.03318 5.10649 5.13843 5.20139 5.38877 5.44582 5.46923 5.55946 5.59030 5.67717 5.78160 5.93429 5.97640 6.13147 6.30015 6.42594 6.82622 6.88192 7.35069 8.90462 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.002041 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.934774 B =13716.855790 C =14428.391705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.047 3.953 11 N -0.499 5.499 12 C 0.034 3.966 13 C -0.111 4.111 14 C 0.017 3.983 15 C 0.053 3.947 16 N -0.486 5.486 17 C 0.098 3.902 18 C 0.291 3.709 19 N -0.522 5.522 20 C 0.010 3.990 21 C -0.090 4.090 22 C -0.126 4.126 23 C -0.102 4.102 24 C -0.117 4.117 25 C 0.032 3.968 26 N -0.582 5.582 27 H 0.436 0.564 28 C 0.036 3.964 29 H 0.264 0.736 30 H -0.012 1.012 31 H -0.016 1.016 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.147 0.853 46 H 0.104 0.896 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 -29.430 -8.541 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.000 4.000 10 C -0.081 4.081 11 N -0.222 5.222 12 C -0.095 4.095 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.075 4.075 16 N -0.209 5.209 17 C -0.032 4.032 18 C 0.023 3.977 19 N -0.244 5.244 20 C -0.108 4.108 21 C -0.110 4.110 22 C -0.146 4.146 23 C -0.121 4.121 24 C -0.137 4.137 25 C -0.079 4.079 26 N -0.195 5.195 27 H 0.278 0.722 28 C -0.092 4.092 29 H 0.073 0.927 30 H 0.007 0.993 31 H 0.003 0.997 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.107 0.893 42 H 0.145 0.855 43 H 0.172 0.828 44 H 0.179 0.821 45 H 0.165 0.835 46 H 0.122 0.878 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.282 -28.987 -7.606 30.147 hybrid contribution 0.576 1.033 -0.942 1.513 sum -2.706 -27.953 -8.549 29.356 Atomic orbital electron populations 1.70126 1.08011 1.27912 1.51336 1.26054 0.95785 1.03635 0.94546 0.85421 0.78180 0.77631 0.79326 1.18824 1.20878 1.19066 1.21604 0.93599 0.92116 1.51062 0.91823 1.18832 0.94150 0.92467 0.94534 1.22489 0.95932 0.89992 0.99723 1.68954 1.21500 1.02818 1.28885 1.23276 1.00290 0.94179 0.91791 1.22769 0.97241 0.93625 0.97546 1.23660 0.95343 0.92897 0.99332 1.23364 0.98444 0.94983 0.90756 1.68672 1.29109 1.06799 1.16366 1.21311 0.89053 0.88863 1.03944 1.23650 0.91981 0.96657 0.85423 1.70343 1.15283 1.19658 1.19136 1.19525 0.93029 1.04273 0.93971 1.20289 0.94408 0.98778 0.97479 1.21022 0.94942 1.00179 0.98422 1.21339 1.00588 0.98694 0.91519 1.20362 0.90670 1.01201 1.01516 1.19220 0.93703 1.03436 0.91533 1.42959 1.13774 1.51580 1.11166 0.72227 1.23838 0.91240 0.95682 0.98417 0.92744 0.99316 0.99742 0.94404 0.91946 0.92363 0.91101 0.89735 0.89064 0.89373 0.92371 0.85418 0.89345 0.85529 0.82817 0.82072 0.83515 0.87803 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.90 13.29 21.45 0.28 -58.62 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.11 5.07 29.85 0.15 2.26 16 10 C 0.05 2.05 4.75 86.31 0.41 2.46 16 11 N -0.50 -19.07 6.41 -927.66 -5.94 -25.02 16 12 C 0.03 1.16 6.81 84.00 0.57 1.73 16 13 C -0.11 -2.79 1.46 -52.79 -0.08 -2.87 16 14 C 0.02 0.45 7.54 84.00 0.63 1.09 16 15 C 0.05 1.36 7.15 85.94 0.61 1.97 16 16 N -0.49 -9.84 6.25 -934.53 -5.84 -15.68 16 17 C 0.10 1.49 5.45 85.56 0.47 1.96 16 18 C 0.29 6.17 7.15 137.92 0.99 7.16 16 19 N -0.52 -14.23 11.10 -179.97 -2.00 -16.23 16 20 C 0.01 0.26 7.23 39.45 0.29 0.54 16 21 C -0.09 -1.97 10.05 22.25 0.22 -1.74 16 22 C -0.13 -1.96 9.96 22.01 0.22 -1.74 16 23 C -0.10 -1.37 10.03 22.31 0.22 -1.14 16 24 C -0.12 -1.82 10.07 22.32 0.22 -1.60 16 25 C 0.03 0.67 7.30 38.86 0.28 0.95 16 26 N -0.58 -10.41 6.23 -179.23 -1.12 -11.53 16 27 H 0.44 4.76 8.96 -92.71 -0.83 3.93 16 28 C 0.04 0.62 7.80 85.95 0.67 1.29 16 29 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 30 H -0.01 -0.70 7.65 -2.39 -0.02 -0.71 16 31 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.04 1.56 7.59 -2.39 -0.02 1.54 16 33 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.07 2.42 7.71 -2.39 -0.02 2.40 16 36 H 0.08 2.05 7.77 -2.39 -0.02 2.03 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.09 2.14 7.79 -2.39 -0.02 2.12 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.09 1.21 7.72 -2.39 -0.02 1.19 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 45 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 46 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.11 1.23 7.80 -2.38 -0.02 1.21 16 Total: -1.00 -78.13 384.80 -5.87 -83.99 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.14 Total: 15.15 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 6.58 Total: -19.12 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -14.61 Total: -127.07 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.13 -5.87 -83.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.569 kcal (2) G-P(sol) polarization free energy of solvation -78.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds