Wall clock time and date at job start Tue Mar 31 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37984 * 120.07413 * 2 1 4 4 C 1.38332 * 120.14463 * 180.29843 * 3 2 1 5 5 C 1.38382 * 120.28981 * 359.70284 * 4 3 2 6 6 C 1.37940 * 120.14703 * 0.02562 * 5 4 3 7 7 C 1.39548 * 120.07281 * 179.75035 * 2 1 3 8 8 C 1.47848 * 120.14343 * 359.97438 * 7 2 1 9 9 N 1.31258 * 126.47237 * 352.59222 * 8 7 2 10 10 N 1.28518 * 109.93476 * 179.97438 * 9 8 7 11 11 C 1.31374 * 110.07816 * 359.76058 * 10 9 8 12 12 N 1.38409 * 126.37261 * 180.24386 * 11 10 9 13 13 C 1.46895 * 111.00273 * 236.20619 * 12 11 10 14 14 C 1.46908 * 110.99672 * 0.15788 * 12 11 10 15 15 H 1.09008 * 109.46733 * 54.99901 * 14 12 11 16 16 C 1.52995 * 109.47064 * 295.00130 * 14 12 11 17 17 C 1.50694 * 109.46900 * 174.99645 * 14 12 11 18 18 H 1.08004 * 120.00216 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99967 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99843 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00078 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46832 * 60.00475 * 21 19 17 23 23 H 1.48496 * 109.46984 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47212 * 300.00340 * 21 19 17 25 25 N 1.36474 * 107.25882 * 0.37760 * 11 10 9 26 26 C 1.46500 * 127.16411 * 179.89657 * 25 11 10 27 27 C 1.53004 * 117.49474 * 44.29414 * 26 25 11 28 28 C 1.53006 * 117.49482 * 112.94857 * 26 25 11 29 29 H 1.08998 * 109.47052 * 270.25085 * 1 2 3 30 30 H 1.09002 * 109.46877 * 30.25534 * 1 2 3 31 31 H 1.09000 * 109.47092 * 150.25129 * 1 2 3 32 32 H 1.08003 * 119.92901 * 0.02667 * 3 2 1 33 33 H 1.08002 * 119.85569 * 179.72371 * 4 3 2 34 34 H 1.08001 * 119.92514 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.07381 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47283 * 59.99480 * 13 12 11 37 37 H 1.08996 * 109.47249 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.47197 * 299.99980 * 13 12 11 39 39 H 1.08995 * 109.47323 * 60.00061 * 16 14 12 40 40 H 1.09000 * 109.47359 * 180.02562 * 16 14 12 41 41 H 1.08997 * 109.47142 * 300.00052 * 16 14 12 42 42 H 0.97004 * 119.99941 * 179.97438 * 20 19 17 43 43 H 1.08996 * 115.55314 * 258.61964 * 26 25 11 44 44 H 1.09009 * 117.49501 * 214.99775 * 27 26 25 45 45 H 1.08998 * 117.50224 * 0.02562 * 27 26 25 46 46 H 1.08999 * 117.49688 * 359.97438 * 28 26 25 47 47 H 1.09000 * 117.49347 * 144.97550 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0062 5 6 4.2812 0.0018 -0.0063 6 6 3.6022 -1.1989 -0.0007 7 6 2.2063 -1.2076 0.0053 8 6 1.4719 -2.4908 0.0114 9 7 0.1759 -2.6474 0.1487 10 7 -0.1213 -3.8971 0.1069 11 6 0.9663 -4.6138 -0.0648 12 7 1.0336 -5.9928 -0.1622 13 6 1.9460 -6.5479 0.8463 14 6 -0.3022 -6.5942 -0.0515 15 1 -0.9626 -6.1520 -0.7975 16 6 -0.8649 -6.3326 1.3470 17 6 -0.2050 -8.0799 -0.2841 18 1 0.7533 -8.5323 -0.4929 19 6 -1.3392 -8.8619 -0.2294 20 7 -2.5060 -8.3111 0.0254 21 14 -1.2187 -10.7037 -0.5170 22 1 -0.3187 -11.3055 0.4994 23 1 -2.5689 -11.3115 -0.4052 24 1 -0.6727 -10.9580 -1.8744 25 7 2.0177 -3.7459 -0.1263 26 6 3.4323 -4.0808 -0.3075 27 6 3.7806 -5.1243 -1.3709 28 6 4.0992 -3.6471 -1.6145 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6585 2.1294 0.0004 33 1 4.1183 2.1331 -0.0107 34 1 5.3612 0.0100 -0.0108 35 1 4.1492 -2.1300 -0.0012 36 1 1.5901 -6.2848 1.8424 37 1 1.9799 -7.6329 0.7478 38 1 2.9449 -6.1379 0.6975 39 1 -0.9352 -5.2580 1.5152 40 1 -1.8558 -6.7791 1.4294 41 1 -0.2044 -6.7746 2.0929 42 1 -3.3040 -8.8612 0.0635 43 1 4.0395 -4.0625 0.5976 44 1 4.6169 -5.7926 -1.1654 45 1 2.9572 -5.5613 -1.9359 46 1 3.4852 -3.1129 -2.3396 47 1 5.1449 -3.3430 -1.5691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001290095214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:13 Heat of formation + Delta-G solvation = 164.693779 kcal Electronic energy + Delta-G solvation = -28558.339763 eV Core-core repulsion = 24937.658453 eV Total energy + Delta-G solvation = -3620.681311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.54086 -39.25833 -37.79408 -37.21295 -33.14509 -32.82063 -32.58520 -31.43256 -28.89332 -28.57331 -26.90472 -25.61045 -25.20342 -23.71473 -23.07184 -22.72632 -21.58938 -21.17513 -20.06700 -19.20627 -17.38032 -16.66848 -16.27134 -15.82709 -15.60984 -15.31139 -15.09288 -14.80447 -14.41411 -13.99286 -13.69595 -13.62046 -13.28688 -13.09587 -13.07456 -12.45594 -12.36178 -12.02269 -11.75850 -11.65793 -11.53692 -11.47889 -11.27314 -11.08236 -10.97413 -10.84121 -10.79458 -10.53997 -10.40054 -10.13899 -10.08276 -9.80479 -9.77116 -9.51425 -8.92468 -8.81590 -8.51221 -8.38269 -7.24655 -6.05377 -4.13001 0.90301 1.31043 2.39348 2.49499 3.28437 3.30390 3.33837 3.34278 3.35526 3.84624 4.25029 4.31304 4.45675 4.50467 4.54370 4.77806 4.81321 4.83298 4.96913 5.25595 5.26593 5.28288 5.38374 5.49126 5.57279 5.66306 5.71805 5.78235 5.82562 5.93512 5.95842 6.00484 6.02641 6.04713 6.26394 6.31488 6.38790 6.42403 6.58029 6.69025 6.78650 6.85455 7.03473 7.08367 7.18675 7.45949 7.62220 7.71471 7.94785 8.25662 8.41615 8.88037 9.29298 9.51613 11.00942 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.003487 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.355530 B = 8027.389463 C = 8998.480418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.128 4.128 6 C -0.114 4.114 7 C 0.000 4.000 8 C 0.185 3.815 9 N -0.263 5.263 10 N -0.317 5.317 11 C 0.399 3.601 12 N -0.446 5.446 13 C 0.031 3.969 14 C 0.228 3.772 15 H 0.055 0.945 16 C -0.172 4.172 17 C -0.516 4.516 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 N -0.463 5.463 26 C 0.051 3.949 27 C -0.152 4.152 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.033 0.967 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.263 0.737 43 H 0.132 0.868 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.102 0.898 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.959 14.595 -0.217 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.048 4.048 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.134 4.134 7 C -0.003 4.003 8 C -0.077 4.077 9 N -0.104 5.104 10 N -0.162 5.162 11 C 0.045 3.955 12 N -0.168 5.168 13 C -0.116 4.116 14 C 0.124 3.876 15 H 0.073 0.927 16 C -0.231 4.231 17 C -0.555 4.555 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 N -0.159 5.159 26 C -0.054 4.054 27 C -0.189 4.189 28 C -0.210 4.210 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.110 0.890 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.130 0.870 45 H 0.137 0.863 46 H 0.121 0.879 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.425 14.631 -0.465 20.552 hybrid contribution 1.157 -1.213 0.407 1.725 sum 15.582 13.418 -0.058 20.564 Atomic orbital electron populations 1.21142 0.89873 1.04024 1.03234 1.19997 0.97045 0.91210 0.96538 1.20971 0.94148 0.97287 1.01678 1.21203 0.94269 0.98019 0.99806 1.20953 0.99687 0.92114 1.01862 1.21568 0.92959 0.99142 0.99727 1.17394 0.91880 0.87939 1.03101 1.22357 0.90929 0.84721 1.09715 1.74294 1.08678 1.10782 1.16604 1.74937 1.21300 0.96752 1.23175 1.23331 0.82944 0.91542 0.97723 1.59258 1.17371 0.94796 1.45423 1.22453 0.94049 1.02583 0.92558 1.19393 0.79645 0.93690 0.94864 0.92724 1.22411 1.04043 0.98874 0.97796 1.20979 0.94298 0.90797 1.49394 0.91854 1.24890 0.95181 0.98754 0.95004 1.69910 0.98460 1.35627 1.48124 0.86541 0.77143 0.84834 0.78746 1.20299 1.21251 1.20196 1.45588 1.06621 1.05958 1.57765 1.21852 0.80295 1.08137 0.95140 1.23506 1.04153 0.91909 0.99379 1.23494 1.01571 0.98737 0.97178 0.90805 0.92486 0.87933 0.85700 0.86105 0.85973 0.85031 0.94847 0.88656 0.92892 0.94400 0.89035 0.95976 0.92668 0.85116 0.87005 0.86264 0.87943 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.09 36.01 0.33 -1.38 16 2 C -0.05 -0.61 5.91 -104.23 -0.62 -1.22 16 3 C -0.12 -1.30 9.69 -39.64 -0.38 -1.69 16 4 C -0.11 -1.06 10.04 -39.49 -0.40 -1.46 16 5 C -0.13 -1.22 10.03 -39.64 -0.40 -1.62 16 6 C -0.11 -1.31 8.69 -39.19 -0.34 -1.66 16 7 C 0.00 -0.01 5.87 -104.97 -0.62 -0.62 16 8 C 0.19 3.27 7.61 -153.78 -1.17 2.10 16 9 N -0.26 -5.41 8.87 32.59 0.29 -5.12 16 10 N -0.32 -7.28 9.28 30.31 0.28 -7.00 16 11 C 0.40 8.31 6.57 -318.90 -2.10 6.21 16 12 N -0.45 -9.47 4.09 -176.09 -0.72 -10.19 16 13 C 0.03 0.56 8.38 60.06 0.50 1.06 16 14 C 0.23 5.79 2.03 -68.87 -0.14 5.65 16 15 H 0.05 1.59 7.95 -51.92 -0.41 1.18 16 16 C -0.17 -4.36 8.26 37.15 0.31 -4.05 16 17 C -0.52 -13.63 7.88 -34.44 -0.27 -13.90 16 18 H 0.06 1.61 6.77 -52.48 -0.36 1.26 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 21 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 N -0.46 -7.85 3.12 -107.60 -0.34 -8.18 16 26 C 0.05 0.62 2.90 -67.93 -0.20 0.42 16 27 C -0.15 -1.71 8.51 -26.69 -0.23 -1.94 16 28 C -0.17 -1.69 8.32 -26.69 -0.22 -1.91 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.10 1.69 5.39 -51.93 -0.28 1.41 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.33 3.83 -52.49 -0.20 1.13 16 36 H 0.03 0.63 6.51 -51.93 -0.34 0.30 16 37 H 0.09 1.78 6.41 -51.93 -0.33 1.45 16 38 H 0.05 0.78 5.05 -51.93 -0.26 0.52 16 39 H 0.04 0.95 5.87 -51.93 -0.30 0.65 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 41 H 0.02 0.52 6.47 -51.93 -0.34 0.19 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.13 1.33 7.89 -51.93 -0.41 0.92 16 44 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 45 H 0.12 1.72 7.79 -51.93 -0.40 1.32 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.11 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -31.02 361.76 -11.93 -42.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.47 Total: 5.18 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -6.03 Total: -14.36 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.14 Total: -54.95 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.02 -11.93 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290095214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.643 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds