Wall clock time and date at job start Tue Mar 31 2020 14:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37984 * 120.07413 * 2 1 4 4 C 1.38332 * 120.14463 * 180.29843 * 3 2 1 5 5 C 1.38382 * 120.28981 * 359.70284 * 4 3 2 6 6 C 1.37940 * 120.14703 * 0.02562 * 5 4 3 7 7 C 1.39548 * 120.07281 * 179.75035 * 2 1 3 8 8 C 1.47848 * 120.14343 * 359.97438 * 7 2 1 9 9 N 1.31258 * 126.47237 * 352.59222 * 8 7 2 10 10 N 1.28518 * 109.93476 * 179.97438 * 9 8 7 11 11 C 1.31374 * 110.07816 * 359.76058 * 10 9 8 12 12 N 1.38409 * 126.37261 * 180.24386 * 11 10 9 13 13 C 1.46895 * 111.00273 * 236.20619 * 12 11 10 14 14 C 1.46908 * 110.99672 * 0.15788 * 12 11 10 15 15 H 1.09008 * 109.46733 * 54.99901 * 14 12 11 16 16 C 1.52995 * 109.47064 * 295.00130 * 14 12 11 17 17 C 1.50694 * 109.46900 * 174.99645 * 14 12 11 18 18 H 1.08004 * 120.00216 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99967 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99843 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00078 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46832 * 60.00475 * 21 19 17 23 23 H 1.48496 * 109.46984 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47212 * 300.00340 * 21 19 17 25 25 N 1.36474 * 107.25882 * 0.37760 * 11 10 9 26 26 C 1.46500 * 127.16411 * 179.89657 * 25 11 10 27 27 C 1.53004 * 117.49474 * 44.29414 * 26 25 11 28 28 C 1.53006 * 117.49482 * 112.94857 * 26 25 11 29 29 H 1.08998 * 109.47052 * 270.25085 * 1 2 3 30 30 H 1.09002 * 109.46877 * 30.25534 * 1 2 3 31 31 H 1.09000 * 109.47092 * 150.25129 * 1 2 3 32 32 H 1.08003 * 119.92901 * 0.02667 * 3 2 1 33 33 H 1.08002 * 119.85569 * 179.72371 * 4 3 2 34 34 H 1.08001 * 119.92514 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.07381 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47283 * 59.99480 * 13 12 11 37 37 H 1.08996 * 109.47249 * 179.97438 * 13 12 11 38 38 H 1.08999 * 109.47197 * 299.99980 * 13 12 11 39 39 H 1.08995 * 109.47323 * 60.00061 * 16 14 12 40 40 H 1.09000 * 109.47359 * 180.02562 * 16 14 12 41 41 H 1.08997 * 109.47142 * 300.00052 * 16 14 12 42 42 H 0.97004 * 119.99941 * 179.97438 * 20 19 17 43 43 H 1.08996 * 115.55314 * 258.61964 * 26 25 11 44 44 H 1.09009 * 117.49501 * 214.99775 * 27 26 25 45 45 H 1.08998 * 117.50224 * 0.02562 * 27 26 25 46 46 H 1.08999 * 117.49688 * 359.97438 * 28 26 25 47 47 H 1.09000 * 117.49347 * 144.97550 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0062 5 6 4.2812 0.0018 -0.0063 6 6 3.6022 -1.1989 -0.0007 7 6 2.2063 -1.2076 0.0053 8 6 1.4719 -2.4908 0.0114 9 7 0.1759 -2.6474 0.1487 10 7 -0.1213 -3.8971 0.1069 11 6 0.9663 -4.6138 -0.0648 12 7 1.0336 -5.9928 -0.1622 13 6 1.9460 -6.5479 0.8463 14 6 -0.3022 -6.5942 -0.0515 15 1 -0.9626 -6.1520 -0.7975 16 6 -0.8649 -6.3326 1.3470 17 6 -0.2050 -8.0799 -0.2841 18 1 0.7533 -8.5323 -0.4929 19 6 -1.3392 -8.8619 -0.2294 20 7 -2.5060 -8.3111 0.0254 21 14 -1.2187 -10.7037 -0.5170 22 1 -0.3187 -11.3055 0.4994 23 1 -2.5689 -11.3115 -0.4052 24 1 -0.6727 -10.9580 -1.8744 25 7 2.0177 -3.7459 -0.1263 26 6 3.4323 -4.0808 -0.3075 27 6 3.7806 -5.1243 -1.3709 28 6 4.0992 -3.6471 -1.6145 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6585 2.1294 0.0004 33 1 4.1183 2.1331 -0.0107 34 1 5.3612 0.0100 -0.0108 35 1 4.1492 -2.1300 -0.0012 36 1 1.5901 -6.2848 1.8424 37 1 1.9799 -7.6329 0.7478 38 1 2.9449 -6.1379 0.6975 39 1 -0.9352 -5.2580 1.5152 40 1 -1.8558 -6.7791 1.4294 41 1 -0.2044 -6.7746 2.0929 42 1 -3.3040 -8.8612 0.0635 43 1 4.0395 -4.0625 0.5976 44 1 4.6169 -5.7926 -1.1654 45 1 2.9572 -5.5613 -1.9359 46 1 3.4852 -3.1129 -2.3396 47 1 5.1449 -3.3430 -1.5691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290095214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:12 Heat of formation + Delta-G solvation = 149.642734 kcal Electronic energy + Delta-G solvation = -28558.992426 eV Core-core repulsion = 24937.658453 eV Total energy + Delta-G solvation = -3621.333973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.95291 -40.18540 -39.12944 -38.58314 -34.92220 -33.94608 -33.83204 -32.56887 -30.72039 -29.99098 -27.90149 -27.29774 -27.07732 -24.95311 -24.10875 -23.74234 -22.95986 -22.34197 -21.18040 -20.76200 -18.58056 -18.21162 -17.68880 -17.19751 -17.01636 -16.60357 -16.28605 -16.03085 -15.62305 -15.56248 -15.06202 -14.67161 -14.51601 -14.35206 -14.23403 -14.00853 -13.47571 -13.38557 -13.07890 -13.04516 -12.91251 -12.75425 -12.65008 -12.58683 -12.52793 -12.26597 -12.08077 -12.02354 -11.88729 -11.69768 -11.64277 -11.24411 -11.06014 -10.86864 -10.81858 -10.51156 -9.83175 -9.58835 -8.77410 -8.12733 -6.28313 -0.09961 0.48155 1.11199 1.20667 1.44810 1.47366 1.54943 1.91953 2.40324 2.43565 2.91160 2.95427 3.16961 3.21274 3.53429 3.63896 3.83513 3.94995 4.00397 4.08314 4.18832 4.29470 4.44999 4.47813 4.48451 4.62463 4.65526 4.67239 4.74448 4.82699 4.85390 4.87425 4.94519 4.96262 4.98240 5.05794 5.08916 5.12314 5.14347 5.35809 5.47062 5.54806 5.57681 5.59590 5.63036 5.73597 5.85352 6.03138 6.10815 6.19523 6.56638 6.80897 7.40610 7.81442 8.93986 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.003487 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.355530 B = 8027.389463 C = 8998.480418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.100 4.100 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.040 4.040 8 C 0.206 3.794 9 N -0.305 5.305 10 N -0.369 5.369 11 C 0.378 3.622 12 N -0.444 5.444 13 C 0.035 3.965 14 C 0.241 3.759 15 H 0.002 0.998 16 C -0.153 4.153 17 C -0.525 4.525 18 H 0.074 0.926 19 C 0.012 3.988 20 N -0.920 5.920 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.289 1.289 24 H -0.270 1.270 25 N -0.455 5.455 26 C 0.021 3.979 27 C -0.155 4.155 28 C -0.144 4.144 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.019 0.981 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.162 0.838 44 H 0.146 0.854 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.097 15.925 -0.298 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.119 4.119 5 C -0.139 4.139 6 C -0.129 4.129 7 C -0.043 4.043 8 C -0.058 4.058 9 N -0.144 5.144 10 N -0.214 5.214 11 C 0.021 3.979 12 N -0.167 5.167 13 C -0.112 4.112 14 C 0.135 3.865 15 H 0.020 0.980 16 C -0.212 4.212 17 C -0.563 4.563 18 H 0.092 0.908 19 C -0.188 4.188 20 N -0.559 5.559 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.195 1.195 25 N -0.150 5.150 26 C -0.082 4.082 27 C -0.192 4.192 28 C -0.181 4.181 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.038 0.962 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.179 0.821 44 H 0.164 0.836 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.603 15.981 -0.548 25.297 hybrid contribution -0.317 -1.350 0.396 1.442 sum 19.286 14.631 -0.152 24.208 Atomic orbital electron populations 1.21017 0.91140 1.03313 1.02427 1.20112 0.96570 0.92241 0.97688 1.21252 0.95231 0.96860 1.01028 1.21702 0.93648 0.99698 0.96821 1.21417 1.01576 0.91062 0.99875 1.21791 0.91442 1.00968 0.98734 1.17617 0.93371 0.86462 1.06820 1.23124 0.90403 0.86165 1.06121 1.74260 1.10876 1.09757 1.19516 1.74764 1.23626 0.98223 1.24768 1.23177 0.84052 0.91432 0.99204 1.59140 1.15475 0.95318 1.46742 1.22518 0.95240 1.02363 0.91042 1.18925 0.81222 0.93416 0.92891 0.97992 1.22176 1.02534 0.98110 0.98422 1.21290 0.94795 0.91242 1.48995 0.90802 1.25810 0.94695 1.03629 0.94624 1.70088 0.99223 1.37353 1.49218 0.85426 0.77126 0.78884 0.79072 1.18811 1.21446 1.19458 1.45748 1.07841 1.04794 1.56617 1.22499 0.78043 1.10121 0.97487 1.23528 1.03984 0.93206 0.98486 1.23593 1.03152 0.97092 0.94291 0.91803 0.90314 0.91382 0.83569 0.82461 0.82147 0.83560 0.96195 0.89043 0.88910 0.95085 0.91857 0.95146 0.92834 0.82111 0.83616 0.90080 0.90011 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.49 9.09 71.24 0.65 -2.84 16 2 C -0.06 -1.66 5.91 -19.61 -0.12 -1.78 16 3 C -0.13 -2.29 9.69 22.23 0.22 -2.07 16 4 C -0.10 -1.35 10.04 22.33 0.22 -1.13 16 5 C -0.12 -1.65 10.03 22.23 0.22 -1.43 16 6 C -0.11 -2.14 8.69 22.53 0.20 -1.95 16 7 C -0.04 -1.12 5.87 -20.09 -0.12 -1.24 16 8 C 0.21 7.54 7.61 136.22 1.04 8.58 16 9 N -0.31 -13.60 8.87 -50.81 -0.45 -14.06 16 10 N -0.37 -18.53 9.28 -58.02 -0.54 -19.07 16 11 C 0.38 16.65 6.57 260.12 1.71 18.36 16 12 N -0.44 -19.77 4.09 -711.03 -2.91 -22.68 16 13 C 0.03 1.27 8.38 127.69 1.07 2.34 16 14 C 0.24 13.06 2.03 44.16 0.09 13.15 16 15 H 0.00 0.13 7.95 -2.38 -0.02 0.12 16 16 C -0.15 -8.31 8.26 71.98 0.59 -7.71 16 17 C -0.52 -28.63 7.88 25.60 0.20 -28.43 16 18 H 0.07 3.79 6.77 -2.91 -0.02 3.77 16 19 C 0.01 0.65 5.30 84.65 0.45 1.10 16 20 N -0.92 -54.82 11.32 21.45 0.24 -54.58 16 21 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 N -0.45 -15.65 3.12 -494.34 -1.54 -17.19 16 26 C 0.02 0.47 2.90 44.99 0.13 0.60 16 27 C -0.15 -3.12 8.51 30.62 0.26 -2.86 16 28 C -0.14 -2.34 8.32 30.62 0.25 -2.08 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 31 H 0.07 2.46 5.39 -2.39 -0.01 2.45 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.15 2.32 3.83 -2.91 -0.01 2.30 16 36 H 0.02 0.76 6.51 -2.39 -0.02 0.74 16 37 H 0.09 3.38 6.41 -2.39 -0.02 3.37 16 38 H 0.09 2.58 5.05 -2.39 -0.01 2.57 16 39 H 0.03 1.69 5.87 -2.39 -0.01 1.67 16 40 H 0.06 3.77 6.07 -2.39 -0.01 3.75 16 41 H 0.03 1.53 6.47 -2.39 -0.02 1.51 16 42 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.16 2.59 7.89 -2.39 -0.02 2.58 16 44 H 0.15 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.08 2.34 7.79 -2.39 -0.02 2.33 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.16 1.15 8.13 -2.39 -0.02 1.13 16 Total: -1.00 -76.45 361.76 4.89 -71.56 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 1.00 Total: 20.23 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 7.07 Total: -9.39 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.20 Total: -127.56 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.45 4.89 -71.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290095214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.203 kcal (2) G-P(sol) polarization free energy of solvation -76.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds