Wall clock time and date at job start Tue Mar 31 2020 14:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37988 * 120.07515 * 2 1 4 4 C 1.38335 * 120.14373 * 180.29382 * 3 2 1 5 5 C 1.38381 * 120.29057 * 359.72250 * 4 3 2 6 6 C 1.37933 * 120.14594 * 359.97438 * 5 4 3 7 7 C 1.39544 * 120.07683 * 179.74127 * 2 1 3 8 8 C 1.47864 * 120.13968 * 359.97438 * 7 2 1 9 9 N 1.31250 * 126.47036 * 6.37782 * 8 7 2 10 10 N 1.28511 * 109.93386 * 180.02562 * 9 8 7 11 11 C 1.31374 * 110.08259 * 0.02562 * 10 9 8 12 12 N 1.38401 * 126.37454 * 180.26545 * 11 10 9 13 13 C 1.46897 * 111.00338 * 123.64111 * 12 11 10 14 14 C 1.46900 * 110.99870 * 359.68670 * 12 11 10 15 15 H 1.09004 * 109.47167 * 309.99763 * 14 12 11 16 16 C 1.52999 * 109.47415 * 70.00039 * 14 12 11 17 17 C 1.50701 * 109.47496 * 190.00518 * 14 12 11 18 18 H 1.08003 * 119.99363 * 359.97438 * 17 14 12 19 19 C 1.37868 * 120.00530 * 180.02562 * 17 14 12 20 20 N 1.31520 * 119.99932 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00460 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46727 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47145 * 119.99566 * 21 19 17 24 24 H 1.48496 * 109.47557 * 239.99958 * 21 19 17 25 25 N 1.36464 * 107.25339 * 0.02562 * 11 10 9 26 26 C 1.46508 * 127.16258 * 179.97438 * 25 11 10 27 27 C 1.52993 * 117.49575 * 315.96327 * 26 25 11 28 28 C 1.53003 * 117.49651 * 247.30629 * 26 25 11 29 29 H 1.08997 * 109.47509 * 270.25955 * 1 2 3 30 30 H 1.09006 * 109.46961 * 30.26115 * 1 2 3 31 31 H 1.09000 * 109.46738 * 150.25288 * 1 2 3 32 32 H 1.07996 * 119.92891 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.85699 * 179.73790 * 4 3 2 34 34 H 1.08004 * 119.92930 * 180.02562 * 5 4 3 35 35 H 1.08004 * 120.07619 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47323 * 60.00014 * 13 12 11 37 37 H 1.09005 * 109.47224 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.46747 * 299.99975 * 13 12 11 39 39 H 1.09001 * 109.47467 * 180.02562 * 16 14 12 40 40 H 1.09002 * 109.46931 * 300.00036 * 16 14 12 41 41 H 1.08998 * 109.46797 * 59.99849 * 16 14 12 42 42 H 0.96999 * 119.99996 * 180.02562 * 20 19 17 43 43 H 1.08999 * 115.55491 * 101.63762 * 26 25 11 44 44 H 1.09002 * 117.50581 * 0.02562 * 27 26 25 45 45 H 1.09008 * 117.49705 * 145.02313 * 27 26 25 46 46 H 1.08994 * 117.50056 * 214.98071 * 28 26 25 47 47 H 1.08999 * 117.49721 * 359.97409 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0061 5 6 4.2812 0.0017 -0.0065 6 6 3.6021 -1.1988 -0.0002 7 6 2.2063 -1.2075 0.0055 8 6 1.4718 -2.4908 0.0118 9 7 0.1739 -2.6475 -0.1042 10 7 -0.1226 -3.8970 -0.0570 11 6 0.9680 -4.6141 0.0926 12 7 1.0379 -5.9937 0.1781 13 6 1.9326 -6.5403 -0.8508 14 6 -0.2991 -6.5952 0.0866 15 1 -0.9701 -6.0978 0.7870 16 6 -0.8355 -6.4320 -1.3370 17 6 -0.2150 -8.0610 0.4267 18 1 0.7368 -8.5016 0.6846 19 6 -1.3526 -8.8396 0.4076 20 7 -2.5114 -8.3031 0.0931 21 14 -1.2481 -10.6565 0.8285 22 1 0.1588 -11.0111 1.1452 23 1 -2.1070 -10.9421 2.0058 24 1 -1.7130 -11.4607 -0.3301 25 7 2.0196 -3.7458 0.1425 26 6 3.4370 -4.0807 0.3013 27 6 3.8009 -5.1331 1.3504 28 6 4.1213 -3.6578 1.6028 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3633 -0.8923 -0.5099 32 1 1.6586 2.1294 0.0004 33 1 4.1183 2.1331 -0.0104 34 1 5.3612 0.0098 -0.0109 35 1 4.1492 -2.1301 -0.0010 36 1 2.9338 -6.1307 -0.7166 37 1 1.9689 -7.6260 -0.7612 38 1 1.5587 -6.2698 -1.8383 39 1 -1.8278 -6.8780 -1.4048 40 1 -0.8965 -5.3718 -1.5829 41 1 -0.1646 -6.9294 -2.0373 42 1 -3.3119 -8.8508 0.0800 43 1 4.0317 -4.0536 -0.6117 44 1 2.9858 -5.5768 1.9223 45 1 4.6353 -5.7983 1.1277 46 1 5.1661 -3.3528 1.5461 47 1 3.5170 -3.1300 2.3407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290095216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:15 Heat of formation + Delta-G solvation = 149.282342 kcal Electronic energy + Delta-G solvation = -28544.163438 eV Core-core repulsion = 24922.813837 eV Total energy + Delta-G solvation = -3621.349601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.95353 -40.18431 -39.13504 -38.57834 -34.92932 -33.94544 -33.83872 -32.57413 -30.73065 -29.95602 -27.89960 -27.35641 -27.06738 -24.95306 -24.10901 -23.74556 -22.94760 -22.34004 -21.18489 -20.75824 -18.58849 -18.21414 -17.67621 -17.22067 -17.04514 -16.60472 -16.28443 -15.99342 -15.62566 -15.55324 -15.02382 -14.67710 -14.49309 -14.43740 -14.21004 -14.03635 -13.51145 -13.42974 -13.07163 -13.03147 -12.86828 -12.79740 -12.64732 -12.60106 -12.51493 -12.27182 -12.10967 -12.00692 -11.89603 -11.65399 -11.57010 -11.29975 -11.03886 -10.90199 -10.78752 -10.52523 -9.82866 -9.60238 -8.76898 -8.12828 -6.27863 -0.10718 0.48067 1.11208 1.20195 1.44114 1.45445 1.57599 1.91702 2.40251 2.43567 2.90762 2.95647 3.17002 3.20895 3.53378 3.63834 3.83408 3.94988 4.01062 4.07577 4.19205 4.29142 4.45112 4.47301 4.48768 4.62146 4.65566 4.67010 4.73845 4.81889 4.85049 4.86501 4.95438 4.95590 4.98213 5.00976 5.06498 5.10892 5.14239 5.34845 5.48721 5.56313 5.57128 5.59293 5.64126 5.76728 5.86508 6.04263 6.12464 6.19376 6.56071 6.81842 7.41062 7.81405 8.94302 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021562 B = 0.003487 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.291810 B = 8028.237802 C = 8980.829872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.127 4.127 4 C -0.100 4.100 5 C -0.122 4.122 6 C -0.110 4.110 7 C -0.041 4.041 8 C 0.208 3.792 9 N -0.306 5.306 10 N -0.371 5.371 11 C 0.378 3.622 12 N -0.444 5.444 13 C 0.035 3.965 14 C 0.240 3.760 15 H 0.004 0.996 16 C -0.150 4.150 17 C -0.520 4.520 18 H 0.072 0.928 19 C 0.011 3.989 20 N -0.920 5.920 21 Si 0.970 3.030 22 H -0.258 1.258 23 H -0.285 1.285 24 H -0.280 1.280 25 N -0.454 5.454 26 C 0.021 3.979 27 C -0.155 4.155 28 C -0.144 4.144 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.262 0.738 43 H 0.163 0.837 44 H 0.081 0.919 45 H 0.146 0.854 46 H 0.157 0.843 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.174 15.771 -0.343 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.118 4.118 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.043 4.043 8 C -0.057 4.057 9 N -0.144 5.144 10 N -0.215 5.215 11 C 0.022 3.978 12 N -0.167 5.167 13 C -0.112 4.112 14 C 0.134 3.866 15 H 0.022 0.978 16 C -0.209 4.209 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.188 4.188 20 N -0.559 5.559 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.211 1.211 24 H -0.206 1.206 25 N -0.150 5.150 26 C -0.081 4.081 27 C -0.192 4.192 28 C -0.182 4.182 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.180 0.820 44 H 0.099 0.901 45 H 0.164 0.836 46 H 0.175 0.825 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.693 15.818 -0.066 25.259 hybrid contribution -0.357 -1.286 -0.260 1.359 sum 19.336 14.532 -0.326 24.190 Atomic orbital electron populations 1.21184 0.91238 1.04353 1.02365 1.20113 0.96582 0.92224 0.97578 1.21259 0.95242 0.96874 1.01076 1.21704 0.93638 0.99710 0.96796 1.21418 1.01584 0.91056 0.99893 1.21799 0.91439 1.00988 0.98689 1.17622 0.93376 0.86444 1.06882 1.23135 0.90333 0.86183 1.06004 1.74137 1.10897 1.09695 1.19715 1.74760 1.23565 0.98288 1.24900 1.23163 0.83962 0.91412 0.99304 1.59106 1.16144 0.95383 1.46054 1.22519 0.95542 1.02317 0.90802 1.18956 0.81210 0.93506 0.92955 0.97818 1.22127 1.02738 0.97505 0.98514 1.21318 0.95004 0.92760 1.46796 0.90962 1.25802 0.94741 1.03372 0.94909 1.70096 0.99450 1.37504 1.48886 0.85323 0.78677 0.78993 0.77506 1.18160 1.21143 1.20619 1.45748 1.07725 1.04770 1.56722 1.22503 0.77840 1.10057 0.97731 1.23524 1.03908 0.93085 0.98665 1.23590 1.03006 0.97193 0.94392 0.92234 0.90264 0.89971 0.83626 0.82466 0.82124 0.83515 0.88902 0.89142 0.96004 0.91766 0.95985 0.94593 0.92856 0.82048 0.90078 0.83604 0.82517 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.29 71.23 0.66 -3.21 16 2 C -0.06 -1.64 5.91 -19.61 -0.12 -1.76 16 3 C -0.13 -2.33 9.69 22.23 0.22 -2.11 16 4 C -0.10 -1.36 10.04 22.33 0.22 -1.13 16 5 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 6 C -0.11 -2.14 8.72 22.52 0.20 -1.94 16 7 C -0.04 -1.14 5.87 -20.09 -0.12 -1.26 16 8 C 0.21 7.60 7.67 136.23 1.04 8.65 16 9 N -0.31 -13.63 8.73 -50.80 -0.44 -14.07 16 10 N -0.37 -18.61 9.59 -58.03 -0.56 -19.17 16 11 C 0.38 16.64 6.57 260.13 1.71 18.35 16 12 N -0.44 -19.70 4.03 -711.03 -2.87 -22.57 16 13 C 0.03 1.25 8.27 127.69 1.06 2.31 16 14 C 0.24 12.92 2.00 44.17 0.09 13.00 16 15 H 0.00 0.24 7.75 -2.38 -0.02 0.23 16 16 C -0.15 -8.02 8.18 71.98 0.59 -7.43 16 17 C -0.52 -28.39 7.91 25.60 0.20 -28.19 16 18 H 0.07 3.74 7.12 -2.91 -0.02 3.72 16 19 C 0.01 0.60 5.30 84.65 0.45 1.05 16 20 N -0.92 -54.71 11.32 21.44 0.24 -54.47 16 21 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 22 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 N -0.45 -15.61 3.12 -494.35 -1.54 -17.15 16 26 C 0.02 0.47 2.90 44.99 0.13 0.60 16 27 C -0.15 -3.11 8.51 30.62 0.26 -2.85 16 28 C -0.14 -2.35 8.35 30.62 0.26 -2.09 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.82 8.09 -2.38 -0.02 1.80 16 31 H 0.08 2.98 5.04 -2.39 -0.01 2.97 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.15 2.31 3.80 -2.91 -0.01 2.30 16 36 H 0.09 2.56 5.07 -2.39 -0.01 2.55 16 37 H 0.09 3.31 6.76 -2.38 -0.02 3.29 16 38 H 0.02 0.82 6.46 -2.38 -0.02 0.81 16 39 H 0.06 3.79 6.07 -2.39 -0.01 3.78 16 40 H 0.02 1.17 6.32 -2.39 -0.02 1.15 16 41 H 0.04 1.77 6.42 -2.39 -0.02 1.76 16 42 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.16 2.57 7.88 -2.39 -0.02 2.56 16 44 H 0.08 2.35 7.77 -2.39 -0.02 2.33 16 45 H 0.15 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.16 1.15 8.13 -2.39 -0.02 1.14 16 47 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -76.42 362.46 4.93 -71.49 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.99 Total: 20.12 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 7.07 Total: -9.45 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.17 Total: -127.42 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.42 4.93 -71.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290095216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.774 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds