Wall clock time and date at job start Tue Mar 31 2020 15:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99756 * 2 1 4 4 C 1.53004 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46779 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47048 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47263 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46793 * 179.97438 * 7 6 5 9 9 C 1.36733 * 127.14041 * 273.66855 * 8 7 6 10 10 C 1.50710 * 126.34536 * 359.97438 * 9 8 7 11 11 N 1.30293 * 107.30799 * 180.02562 * 9 8 7 12 12 N 1.28529 * 110.05404 * 359.72601 * 11 9 8 13 13 C 1.31220 * 109.85670 * 0.45705 * 12 11 9 14 14 N 1.38573 * 126.47101 * 179.82179 * 13 12 11 15 15 C 1.46898 * 111.00099 * 306.03173 * 14 13 12 16 16 C 1.46903 * 111.00323 * 69.98598 * 14 13 12 17 17 H 1.08995 * 109.47208 * 54.99413 * 16 14 13 18 18 C 1.53003 * 109.46734 * 295.00173 * 16 14 13 19 19 C 1.50697 * 109.47408 * 175.00105 * 16 14 13 20 20 H 1.07995 * 120.00087 * 359.97438 * 19 16 14 21 21 C 1.37878 * 119.99756 * 179.97438 * 19 16 14 22 22 N 1.31515 * 120.00237 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99698 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47096 * 120.00243 * 23 21 19 26 26 H 1.48498 * 109.47091 * 239.99875 * 23 21 19 27 27 H 1.08999 * 109.47586 * 60.00066 * 1 2 3 28 28 H 1.09005 * 109.47205 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47239 * 299.99662 * 1 2 3 30 30 H 1.08997 * 109.47439 * 59.99849 * 3 2 1 31 31 H 1.09002 * 109.46698 * 299.99998 * 3 2 1 32 32 H 1.08998 * 109.46878 * 60.00172 * 4 3 2 33 33 H 1.08994 * 109.47328 * 299.99718 * 4 3 2 34 34 H 1.09005 * 109.47116 * 60.00188 * 5 4 3 35 35 H 1.08996 * 109.47709 * 299.99875 * 5 4 3 36 36 H 1.08997 * 109.47598 * 60.00245 * 6 5 4 37 37 H 1.09002 * 109.47154 * 299.99887 * 6 5 4 38 38 H 1.08991 * 109.47265 * 60.00048 * 7 6 5 39 39 H 1.09002 * 109.46663 * 299.99844 * 7 6 5 40 40 H 1.08999 * 109.47119 * 89.99910 * 10 9 8 41 41 H 1.09003 * 109.46703 * 210.00052 * 10 9 8 42 42 H 1.08997 * 109.46851 * 330.00101 * 10 9 8 43 43 H 1.09000 * 109.47422 * 54.17433 * 15 14 13 44 44 H 1.08999 * 109.47165 * 174.17517 * 15 14 13 45 45 H 1.08997 * 109.46951 * 294.17309 * 15 14 13 46 46 H 1.09002 * 109.47302 * 299.99545 * 18 16 14 47 47 H 1.08999 * 109.47344 * 59.99878 * 18 16 14 48 48 H 1.09002 * 109.47460 * 179.97438 * 18 16 14 49 49 H 0.96998 * 119.99957 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 -0.0013 6 6 5.6066 3.6033 -0.0013 7 6 5.9507 5.0941 -0.0013 8 7 7.4064 5.2592 -0.0007 9 6 8.2341 5.2831 1.0874 10 6 7.8182 5.1436 2.5293 11 7 9.4489 5.4498 0.6468 12 7 9.4457 5.5265 -0.6361 13 6 8.2175 5.4217 -1.0859 14 7 7.8199 5.4623 -2.4128 15 6 8.3174 6.6757 -3.0746 16 6 8.2543 4.2559 -3.1297 17 1 7.8879 3.3716 -2.6082 18 6 9.7828 4.2183 -3.1853 19 6 7.7010 4.2778 -4.5312 20 1 7.0876 5.1049 -4.8568 21 6 7.9778 3.2418 -5.3979 22 7 8.7243 2.2343 -5.0013 23 14 7.2914 3.2687 -7.1350 24 1 6.4874 4.5018 -7.3306 25 1 8.4112 3.2474 -8.1102 26 1 6.4295 2.0778 -7.3451 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8031 2.2372 0.8899 31 1 1.8030 2.2371 -0.8900 32 1 4.1608 1.4705 -0.8909 33 1 4.1616 1.4704 0.8891 34 1 3.6677 3.9007 0.8887 35 1 3.6671 3.9001 -0.8912 36 1 6.0256 3.1334 -0.8910 37 1 6.0255 3.1341 0.8889 38 1 5.5318 5.5637 0.8886 39 1 5.5318 5.5637 -0.8913 40 1 7.8331 4.0909 2.8115 41 1 8.5099 5.6994 3.1623 42 1 6.8107 5.5397 2.6567 43 1 9.3977 6.7429 -2.9458 44 1 8.0803 6.6330 -4.1376 45 1 7.8435 7.5515 -2.6315 46 1 10.1493 5.1026 -3.7068 47 1 10.1830 4.2025 -2.1716 48 1 10.1052 3.3230 -3.7168 49 1 8.9194 1.5057 -5.6112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316455666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:46 Heat of formation + Delta-G solvation = 71.302529 kcal Electronic energy + Delta-G solvation = -26376.962760 eV Core-core repulsion = 22887.675652 eV Total energy + Delta-G solvation = -3489.287108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45943 -37.20665 -36.75106 -34.47934 -32.93476 -31.51671 -30.86376 -29.24572 -28.76005 -27.12340 -26.44176 -25.20808 -25.09852 -22.79146 -21.42981 -21.25624 -20.36615 -19.34602 -16.69305 -16.37986 -16.19877 -16.09612 -15.87974 -15.25549 -14.70714 -14.65121 -14.26665 -13.96182 -13.94874 -13.70642 -13.54307 -13.19224 -13.07489 -12.74271 -12.70160 -12.39375 -12.29507 -12.22691 -11.57798 -11.40590 -11.32710 -11.24779 -11.18756 -10.99267 -10.93145 -10.78257 -10.66078 -10.52314 -10.21353 -10.14510 -10.12599 -9.86224 -9.61521 -8.88751 -8.46842 -8.37770 -7.92467 -7.68429 -6.07571 -4.13867 1.42098 2.22302 2.35416 2.73785 3.26257 3.34188 3.36324 3.39035 4.32402 4.46329 4.60960 4.65515 4.71576 4.75596 4.80995 4.81877 4.86372 5.07142 5.11251 5.19742 5.24656 5.32767 5.37936 5.45284 5.51289 5.53893 5.65004 5.68900 5.73923 5.85594 6.00912 6.03830 6.09078 6.25090 6.30025 6.40604 6.53673 6.64292 6.86233 7.07883 7.10106 7.18374 7.54735 7.65857 7.76399 7.93330 8.26303 8.47772 8.89654 9.30174 9.51059 10.99130 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007457 B = 0.004103 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.136650 B = 6822.982915 C = 9870.657218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.269 6.269 3 C -0.081 4.081 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.134 4.134 7 C 0.117 3.883 8 N -0.470 5.470 9 C 0.153 3.847 10 C -0.057 4.057 11 N -0.296 5.296 12 N -0.315 5.315 13 C 0.376 3.624 14 N -0.470 5.470 15 C 0.045 3.955 16 C 0.227 3.773 17 H 0.035 0.965 18 C -0.174 4.174 19 C -0.507 4.507 20 H 0.066 0.934 21 C 0.063 3.937 22 N -0.887 5.887 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.086 0.914 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 1.873 13.422 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.043 6.043 3 C -0.229 4.229 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.173 4.173 7 C -0.006 4.006 8 N -0.164 5.164 9 C -0.114 4.114 10 C -0.116 4.116 11 N -0.138 5.138 12 N -0.159 5.159 13 C 0.020 3.980 14 N -0.196 5.196 15 C -0.103 4.103 16 C 0.122 3.878 17 H 0.053 0.947 18 C -0.233 4.233 19 C -0.546 4.546 20 H 0.084 0.916 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.104 0.896 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.142 0.994 13.332 18.747 hybrid contribution -1.851 0.639 -1.050 2.222 sum -14.993 1.634 12.282 19.450 Atomic orbital electron populations 1.23361 0.94482 1.06427 1.04774 1.87095 1.07026 1.12099 1.98061 1.23433 1.00902 0.93727 1.04843 1.21326 0.91999 0.97026 1.03976 1.21436 0.95077 0.95571 1.02494 1.21931 0.96253 0.95117 1.03985 1.21781 0.76483 0.98005 1.04365 1.46380 1.08845 1.54700 1.06443 1.24603 0.87819 1.07255 0.91762 1.20077 1.01775 1.03399 0.86358 1.73937 1.17538 1.18065 1.04227 1.74725 1.17104 1.21545 1.02479 1.22912 0.85133 1.00264 0.89695 1.59403 1.58738 1.07035 0.94465 1.22244 0.98547 0.89070 1.00435 1.19375 0.91764 0.83924 0.92729 0.94679 1.22446 0.98725 1.02584 0.99535 1.21033 1.31501 1.06687 0.95377 0.91596 1.24900 0.95050 0.95280 0.98679 1.69918 1.37302 1.09546 1.35805 0.86437 0.78761 0.78015 0.84177 1.19672 1.21000 1.21012 0.90497 0.88191 0.90665 0.90217 0.89892 0.90293 0.91001 0.91812 0.90976 0.89883 0.91588 0.89784 0.87846 0.90212 0.89252 0.91036 0.94158 0.89108 0.93839 0.94986 0.94796 0.89584 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.76 101.05 1.09 0.23 16 2 S -0.27 -2.81 22.38 -107.50 -2.41 -5.22 16 3 C -0.08 -0.72 5.94 37.16 0.22 -0.50 16 4 C -0.10 -1.05 5.22 -26.73 -0.14 -1.19 16 5 C -0.11 -0.98 5.21 -26.73 -0.14 -1.12 16 6 C -0.13 -1.62 5.54 -26.73 -0.15 -1.77 16 7 C 0.12 1.47 5.99 -4.04 -0.02 1.44 16 8 N -0.47 -7.92 2.81 -114.08 -0.32 -8.24 16 9 C 0.15 2.51 8.07 -154.02 -1.24 1.26 16 10 C -0.06 -0.59 10.26 36.01 0.37 -0.22 16 11 N -0.30 -6.07 12.18 32.99 0.40 -5.67 16 12 N -0.32 -7.11 9.70 30.31 0.29 -6.82 16 13 C 0.38 7.84 6.21 -318.88 -1.98 5.86 16 14 N -0.47 -10.18 4.77 -176.09 -0.84 -11.02 16 15 C 0.04 0.90 8.66 60.06 0.52 1.42 16 16 C 0.23 5.69 2.32 -68.86 -0.16 5.53 16 17 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 18 C -0.17 -4.47 8.20 37.16 0.30 -4.17 16 19 C -0.51 -13.31 7.80 -34.44 -0.27 -13.58 16 20 H 0.07 1.70 6.82 -52.49 -0.36 1.34 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 22 N -0.89 -24.96 11.32 55.43 0.63 -24.34 16 23 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.77 7.36 -51.93 -0.38 0.39 16 39 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.56 7.35 -51.93 -0.38 0.18 16 43 H 0.04 0.84 6.57 -51.93 -0.34 0.50 16 44 H 0.09 1.84 6.28 -51.93 -0.33 1.52 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.79 6.61 -51.93 -0.34 0.45 16 47 H 0.03 0.87 5.92 -51.93 -0.31 0.56 16 48 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 49 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -31.85 401.01 -11.57 -43.42 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.65 Total: 1.38 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.70 Total: -5.21 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.16 Total: -56.09 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.41 Total: -5.22 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.85 -11.57 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316455666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.719 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds