Wall clock time and date at job start Tue Mar 31 2020 15:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81403 * 102.99756 * 2 1 4 4 C 1.53004 * 109.46913 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46779 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47048 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47263 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46793 * 179.97438 * 7 6 5 9 9 C 1.36733 * 127.14041 * 273.66855 * 8 7 6 10 10 C 1.50710 * 126.34536 * 359.97438 * 9 8 7 11 11 N 1.30293 * 107.30799 * 180.02562 * 9 8 7 12 12 N 1.28529 * 110.05404 * 359.72601 * 11 9 8 13 13 C 1.31220 * 109.85670 * 0.45705 * 12 11 9 14 14 N 1.38573 * 126.47101 * 179.82179 * 13 12 11 15 15 C 1.46898 * 111.00099 * 306.03173 * 14 13 12 16 16 C 1.46903 * 111.00323 * 69.98598 * 14 13 12 17 17 H 1.08995 * 109.47208 * 54.99413 * 16 14 13 18 18 C 1.53003 * 109.46734 * 295.00173 * 16 14 13 19 19 C 1.50697 * 109.47408 * 175.00105 * 16 14 13 20 20 H 1.07995 * 120.00087 * 359.97438 * 19 16 14 21 21 C 1.37878 * 119.99756 * 179.97438 * 19 16 14 22 22 N 1.31515 * 120.00237 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99698 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47096 * 120.00243 * 23 21 19 26 26 H 1.48498 * 109.47091 * 239.99875 * 23 21 19 27 27 H 1.08999 * 109.47586 * 60.00066 * 1 2 3 28 28 H 1.09005 * 109.47205 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47239 * 299.99662 * 1 2 3 30 30 H 1.08997 * 109.47439 * 59.99849 * 3 2 1 31 31 H 1.09002 * 109.46698 * 299.99998 * 3 2 1 32 32 H 1.08998 * 109.46878 * 60.00172 * 4 3 2 33 33 H 1.08994 * 109.47328 * 299.99718 * 4 3 2 34 34 H 1.09005 * 109.47116 * 60.00188 * 5 4 3 35 35 H 1.08996 * 109.47709 * 299.99875 * 5 4 3 36 36 H 1.08997 * 109.47598 * 60.00245 * 6 5 4 37 37 H 1.09002 * 109.47154 * 299.99887 * 6 5 4 38 38 H 1.08991 * 109.47265 * 60.00048 * 7 6 5 39 39 H 1.09002 * 109.46663 * 299.99844 * 7 6 5 40 40 H 1.08999 * 109.47119 * 89.99910 * 10 9 8 41 41 H 1.09003 * 109.46703 * 210.00052 * 10 9 8 42 42 H 1.08997 * 109.46851 * 330.00101 * 10 9 8 43 43 H 1.09000 * 109.47422 * 54.17433 * 15 14 13 44 44 H 1.08999 * 109.47165 * 174.17517 * 15 14 13 45 45 H 1.08997 * 109.46951 * 294.17309 * 15 14 13 46 46 H 1.09002 * 109.47302 * 299.99545 * 18 16 14 47 47 H 1.08999 * 109.47344 * 59.99878 * 18 16 14 48 48 H 1.09002 * 109.47460 * 179.97438 * 18 16 14 49 49 H 0.96998 * 119.99957 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 -0.0013 6 6 5.6066 3.6033 -0.0013 7 6 5.9507 5.0941 -0.0013 8 7 7.4064 5.2592 -0.0007 9 6 8.2341 5.2831 1.0874 10 6 7.8182 5.1436 2.5293 11 7 9.4489 5.4498 0.6468 12 7 9.4457 5.5265 -0.6361 13 6 8.2175 5.4217 -1.0859 14 7 7.8199 5.4623 -2.4128 15 6 8.3174 6.6757 -3.0746 16 6 8.2543 4.2559 -3.1297 17 1 7.8879 3.3716 -2.6082 18 6 9.7828 4.2183 -3.1853 19 6 7.7010 4.2778 -4.5312 20 1 7.0876 5.1049 -4.8568 21 6 7.9778 3.2418 -5.3979 22 7 8.7243 2.2343 -5.0013 23 14 7.2914 3.2687 -7.1350 24 1 6.4874 4.5018 -7.3306 25 1 8.4112 3.2474 -8.1102 26 1 6.4295 2.0778 -7.3451 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8031 2.2372 0.8899 31 1 1.8030 2.2371 -0.8900 32 1 4.1608 1.4705 -0.8909 33 1 4.1616 1.4704 0.8891 34 1 3.6677 3.9007 0.8887 35 1 3.6671 3.9001 -0.8912 36 1 6.0256 3.1334 -0.8910 37 1 6.0255 3.1341 0.8889 38 1 5.5318 5.5637 0.8886 39 1 5.5318 5.5637 -0.8913 40 1 7.8331 4.0909 2.8115 41 1 8.5099 5.6994 3.1623 42 1 6.8107 5.5397 2.6567 43 1 9.3977 6.7429 -2.9458 44 1 8.0803 6.6330 -4.1376 45 1 7.8435 7.5515 -2.6315 46 1 10.1493 5.1026 -3.7068 47 1 10.1830 4.2025 -2.1716 48 1 10.1052 3.3230 -3.7168 49 1 8.9194 1.5057 -5.6112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316455666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:45 Heat of formation + Delta-G solvation = 55.265140 kcal Electronic energy + Delta-G solvation = -26377.658193 eV Core-core repulsion = 22887.675652 eV Total energy + Delta-G solvation = -3489.982541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.90370 -38.99458 -37.73700 -35.58040 -34.89579 -32.73525 -31.97011 -30.67492 -29.80515 -28.47987 -27.44896 -27.16995 -26.81703 -23.82558 -23.15542 -22.08372 -21.69147 -20.96461 -18.42956 -17.76646 -17.58238 -17.16905 -16.93683 -16.76741 -16.48209 -15.67152 -15.43782 -15.05657 -14.99139 -14.81786 -14.68629 -14.30312 -14.15084 -13.88060 -13.67205 -13.57438 -13.36442 -13.28182 -13.12197 -13.08745 -12.96415 -12.73603 -12.60856 -12.39673 -12.20609 -12.13544 -12.09053 -12.01961 -11.99381 -11.54774 -11.40905 -11.02003 -10.92926 -10.81278 -10.54412 -9.91161 -9.43848 -8.72724 -8.14769 -6.28329 0.73189 0.82898 1.42320 1.43548 1.46551 1.57059 1.70120 1.87400 2.41474 3.07622 3.16266 3.53379 3.65957 3.73817 3.92312 3.95992 4.13542 4.20600 4.28830 4.33102 4.34302 4.37193 4.45237 4.56411 4.62135 4.65069 4.69010 4.72754 4.74619 4.78170 4.87391 4.87761 4.97263 4.98588 5.03209 5.09221 5.10236 5.12891 5.17686 5.33758 5.38070 5.44178 5.60855 5.66485 5.89387 6.04450 6.20204 6.66017 6.81797 7.40926 7.81943 8.92363 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007457 B = 0.004103 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3754.136650 B = 6822.982915 C = 9870.657218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.344 6.344 3 C -0.064 4.064 4 C -0.102 4.102 5 C -0.094 4.094 6 C -0.126 4.126 7 C 0.111 3.889 8 N -0.466 5.466 9 C 0.177 3.823 10 C -0.057 4.057 11 N -0.343 5.343 12 N -0.352 5.352 13 C 0.349 3.651 14 N -0.464 5.464 15 C 0.050 3.950 16 C 0.240 3.760 17 H -0.004 1.004 18 C -0.156 4.156 19 C -0.515 4.515 20 H 0.072 0.928 21 C 0.014 3.986 22 N -0.921 5.921 23 Si 0.966 3.034 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.024 0.976 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.060 0.940 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 3.411 15.111 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.118 6.118 3 C -0.212 4.212 4 C -0.141 4.141 5 C -0.134 4.134 6 C -0.165 4.165 7 C -0.010 4.010 8 N -0.159 5.159 9 C -0.092 4.092 10 C -0.116 4.116 11 N -0.184 5.184 12 N -0.195 5.195 13 C -0.008 4.008 14 N -0.189 5.189 15 C -0.098 4.098 16 C 0.134 3.866 17 H 0.014 0.986 18 C -0.215 4.215 19 C -0.553 4.553 20 H 0.090 0.910 21 C -0.185 4.185 22 N -0.561 5.561 23 Si 0.791 3.209 24 H -0.182 1.182 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.043 0.957 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.078 0.922 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.223 2.554 15.038 22.268 hybrid contribution -0.918 0.135 -1.433 1.707 sum -17.141 2.689 13.606 22.049 Atomic orbital electron populations 1.23385 0.90659 1.07325 1.05936 1.87370 1.11404 1.14800 1.98247 1.23362 0.99706 0.91946 1.06161 1.21267 0.93051 0.97465 1.02332 1.21375 0.92733 0.95023 1.04250 1.21835 0.98259 0.94613 1.01758 1.22165 0.74014 0.98342 1.06468 1.46630 1.10364 1.53602 1.05321 1.25781 0.86575 1.03018 0.93794 1.20445 1.04132 1.05008 0.82024 1.73849 1.20069 1.20992 1.03442 1.74566 1.18555 1.22457 1.03940 1.22841 0.85813 1.02259 0.89924 1.59274 1.58477 1.06092 0.95093 1.22233 0.97802 0.89424 1.00319 1.18983 0.90756 0.84321 0.92503 0.98573 1.22245 0.99561 1.01133 0.98578 1.21285 1.31386 1.06830 0.95842 0.90989 1.25745 0.95234 0.94819 1.02709 1.70065 1.38553 1.10248 1.37206 0.85385 0.78066 0.78391 0.79082 1.18233 1.20907 1.20862 0.89762 0.87482 0.88985 0.87712 0.89545 0.93734 0.91008 0.87925 0.91156 0.95182 0.90793 0.84710 0.88622 0.88541 0.87999 0.87221 0.95702 0.89537 0.91066 0.94925 0.95473 0.92167 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.76 113.37 1.22 -0.05 16 2 S -0.34 -7.01 22.38 -56.49 -1.26 -8.28 16 3 C -0.06 -1.02 5.94 71.98 0.43 -0.59 16 4 C -0.10 -1.97 5.22 30.59 0.16 -1.81 16 5 C -0.09 -1.52 5.21 30.59 0.16 -1.36 16 6 C -0.13 -2.92 5.54 30.60 0.17 -2.75 16 7 C 0.11 2.52 5.99 86.38 0.52 3.03 16 8 N -0.47 -15.21 2.81 -514.84 -1.45 -16.66 16 9 C 0.18 5.48 8.07 137.64 1.11 6.59 16 10 C -0.06 -0.95 10.26 71.24 0.73 -0.22 16 11 N -0.34 -14.10 12.18 -49.53 -0.60 -14.70 16 12 N -0.35 -16.33 9.70 -58.01 -0.56 -16.89 16 13 C 0.35 14.82 6.21 260.11 1.62 16.43 16 14 N -0.46 -20.57 4.77 -711.01 -3.39 -23.96 16 15 C 0.05 2.01 8.66 127.69 1.11 3.11 16 16 C 0.24 12.62 2.32 44.17 0.10 12.73 16 17 H 0.00 -0.22 8.11 -2.39 -0.02 -0.24 16 18 C -0.16 -8.45 8.20 71.98 0.59 -7.86 16 19 C -0.52 -27.66 7.80 25.60 0.20 -27.46 16 20 H 0.07 3.71 6.82 -2.91 -0.02 3.69 16 21 C 0.01 0.77 5.30 84.65 0.45 1.21 16 22 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 23 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.14 1.72 7.36 -2.39 -0.02 1.70 16 39 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.11 1.04 7.35 -2.39 -0.02 1.02 16 43 H 0.02 1.06 6.57 -2.39 -0.02 1.04 16 44 H 0.09 3.52 6.28 -2.39 -0.01 3.51 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.03 1.69 6.61 -2.39 -0.02 1.68 16 47 H 0.03 1.47 5.92 -2.39 -0.01 1.45 16 48 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 49 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -75.01 401.01 4.47 -70.54 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.91 Total: 17.56 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 8.56 Total: 1.01 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.76 Total: -125.73 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.26 Total: -8.28 kcal Total: -75.01 4.47 -70.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316455666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.808 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds