Wall clock time and date at job start Tue Mar 31 2020 15:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 N 1.46504 * 109.47323 * 119.99940 * 2 1 3 5 5 C 1.35197 * 126.00111 * 275.00152 * 4 2 1 6 6 C 1.34570 * 107.61233 * 179.97438 * 5 4 2 7 7 C 1.40490 * 108.04251 * 0.08210 * 6 5 4 8 8 N 1.30129 * 108.22332 * 359.89850 * 7 6 5 9 9 C 1.50950 * 123.48569 * 179.86380 * 7 6 5 10 10 H 1.08990 * 109.71620 * 103.04114 * 9 7 6 11 11 N 1.46504 * 109.71356 * 223.63791 * 9 7 6 12 12 C 1.38814 * 120.00006 * 274.39478 * 11 9 7 13 13 C 1.39799 * 119.58449 * 0.27879 * 12 11 9 14 14 C 1.38599 * 119.49028 * 180.25490 * 13 12 11 15 15 C 1.38387 * 118.68061 * 359.47582 * 14 13 12 16 16 C 1.40554 * 119.14849 * 0.25032 * 15 14 13 17 17 C 1.41321 * 119.78258 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00145 * 0.02562 * 17 16 15 19 19 C 1.40023 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.30751 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00318 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46760 * 89.99720 * 21 19 17 23 23 H 1.48493 * 109.47533 * 209.99964 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00504 * 21 19 17 25 25 N 1.31959 * 119.58875 * 180.02562 * 12 11 9 26 26 C 1.53370 * 108.23896 * 343.33545 * 9 7 6 27 27 C 1.53043 * 109.74286 * 50.60250 * 26 9 7 28 28 C 1.50890 * 128.32523 * 180.17189 * 6 5 4 29 29 H 1.08995 * 109.47447 * 299.99694 * 1 2 3 30 30 H 1.08998 * 109.47693 * 60.00057 * 1 2 3 31 31 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47360 * 240.00238 * 2 1 3 33 33 H 1.08995 * 109.46784 * 59.99899 * 3 2 1 34 34 H 1.09004 * 109.46937 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47189 * 300.00055 * 3 2 1 36 36 H 1.07992 * 126.19171 * 359.94213 * 5 4 2 37 37 H 0.97001 * 120.00034 * 94.39186 * 11 9 7 38 38 H 1.07994 * 120.25853 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.66287 * 179.75684 * 14 13 12 40 40 H 1.08003 * 120.43145 * 180.23235 * 15 14 13 41 41 H 0.97005 * 119.99447 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.41808 * 170.72880 * 26 9 7 43 43 H 1.08998 * 109.42654 * 290.55369 * 26 9 7 44 44 H 1.09000 * 109.42054 * 168.25304 * 27 26 9 45 45 H 1.09004 * 109.36668 * 48.40418 * 27 26 9 46 46 H 1.08995 * 109.71417 * 282.96333 * 28 6 5 47 47 H 1.09001 * 109.71788 * 43.61480 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1934 -0.1375 2.4174 6 6 2.6534 -1.0997 3.2380 7 6 2.7675 -2.2869 2.4956 8 7 2.3868 -2.0421 1.2756 9 6 3.2573 -3.5901 3.0789 10 1 2.4113 -4.2530 3.2597 11 7 4.1940 -4.2266 2.1494 12 6 3.7158 -5.0347 1.1270 13 6 2.3386 -5.2305 0.9888 14 6 1.8636 -6.0419 -0.0295 15 6 2.7742 -6.6286 -0.8907 16 6 4.1464 -6.3886 -0.7035 17 6 5.0880 -6.9813 -1.5748 18 1 4.7524 -7.6160 -2.3816 19 6 6.4561 -6.7457 -1.3920 20 7 6.8624 -5.9776 -0.4150 21 14 7.7009 -7.5297 -2.5432 22 1 7.9515 -6.6234 -3.6925 23 1 8.9718 -7.7650 -1.8121 24 1 7.1688 -8.8239 -3.0404 25 7 4.5667 -5.6043 0.2947 26 6 3.9688 -3.2860 4.4031 27 6 3.0726 -2.4109 5.2825 28 6 3.0023 -0.9928 4.7021 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.9996 0.8905 2.6855 37 1 5.1482 -4.0833 2.2484 38 1 1.6501 -4.7561 1.6724 39 1 0.8036 -6.2094 -0.1513 40 1 2.4350 -7.2630 -1.6963 41 1 7.8102 -5.8147 -0.2882 42 1 4.1851 -4.2203 4.9212 43 1 4.9020 -2.7602 4.2009 44 1 3.4835 -2.3698 6.2912 45 1 2.0707 -2.8389 5.3163 46 1 3.9684 -0.5009 4.8149 47 1 2.2344 -0.4201 5.2223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320737357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:43 Heat of formation + Delta-G solvation = 108.202050 kcal Electronic energy + Delta-G solvation = -27931.282004 eV Core-core repulsion = 24308.151029 eV Total energy + Delta-G solvation = -3623.130976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26711 -38.26758 -37.12427 -35.11576 -34.26228 -33.07398 -30.88748 -30.02857 -29.37857 -28.80357 -27.54007 -26.98039 -25.22067 -24.22041 -21.94761 -21.58080 -21.11653 -20.20427 -19.76147 -18.70023 -17.25459 -16.56831 -16.15592 -15.54290 -15.07986 -14.71638 -14.63552 -14.44412 -14.26391 -13.80063 -13.47147 -13.31290 -13.16753 -13.04983 -12.81893 -12.61935 -12.46650 -12.23687 -11.93922 -11.91373 -11.66571 -11.46441 -11.33379 -11.14957 -11.02613 -10.89058 -10.78214 -10.65313 -10.47467 -10.28429 -9.94260 -9.78277 -9.41361 -8.94564 -8.78934 -8.03322 -7.76558 -7.36732 -6.38918 -6.20154 -4.33445 2.21092 2.67487 2.98009 3.04891 3.17076 3.20719 3.39783 3.42989 4.07129 4.28289 4.41994 4.73248 4.76192 4.89495 4.92638 4.97326 5.02684 5.12373 5.25124 5.29050 5.40365 5.45736 5.49142 5.61267 5.66608 5.70408 5.81774 5.87353 5.94758 5.97534 6.00776 6.12260 6.22233 6.27689 6.35331 6.37355 6.44834 6.77533 6.96704 7.01318 7.02949 7.08947 7.32775 7.37467 7.74514 7.95133 8.06791 8.17148 8.29313 8.50093 8.81798 8.93687 9.26566 10.38329 10.53986 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.003736 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.561916 B = 7492.614504 C = 8304.997153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 C -0.161 4.161 4 N -0.380 5.380 5 C 0.047 3.953 6 C -0.240 4.240 7 C 0.062 3.938 8 N -0.243 5.243 9 C 0.247 3.753 10 H 0.091 0.909 11 N -0.726 5.726 12 C 0.418 3.582 13 C -0.342 4.342 14 C -0.034 4.034 15 C -0.318 4.318 16 C 0.294 3.706 17 C -0.439 4.439 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.718 5.718 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.263 1.263 25 N -0.529 5.529 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.036 4.036 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.395 0.605 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.267 0.733 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 14.482 8.593 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 C -0.220 4.220 4 N -0.163 5.163 5 C -0.097 4.097 6 C -0.252 4.252 7 C -0.110 4.110 8 N -0.061 5.061 9 C 0.137 3.863 10 H 0.108 0.892 11 N -0.361 5.361 12 C 0.178 3.822 13 C -0.368 4.368 14 C -0.059 4.059 15 C -0.341 4.341 16 C 0.166 3.834 17 C -0.472 4.472 18 H 0.099 0.901 19 C -0.151 4.151 20 N -0.341 5.341 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.187 1.187 25 N -0.250 5.250 26 C -0.159 4.159 27 C -0.150 4.150 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.180 0.820 37 H 0.230 0.770 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.694 14.319 7.517 17.503 hybrid contribution 0.009 0.189 0.004 0.190 sum -6.685 14.509 7.520 17.656 Atomic orbital electron populations 1.22215 0.93998 1.03360 1.02458 1.21142 0.94502 0.92416 0.86506 1.22168 1.02330 0.94328 1.03135 1.49031 1.51635 1.07737 1.07890 1.21750 1.02826 0.99045 0.86090 1.20031 1.14244 0.93304 0.97650 1.23161 0.99354 0.97220 0.91247 1.77477 1.17830 0.91445 1.19350 1.19115 0.92703 0.87078 0.87385 0.89179 1.44075 1.07521 1.52906 1.31583 1.18421 0.88663 0.87817 0.87251 1.20523 0.93898 1.14813 1.07563 1.20557 0.96811 0.94653 0.93879 1.21491 0.94740 1.12327 1.05543 1.18160 0.89526 0.87257 0.88421 1.19530 0.90326 1.25626 1.11701 0.90122 1.26015 0.99538 0.94351 0.95244 1.70171 1.15421 1.24709 1.23752 0.86429 0.79803 0.80395 0.80695 1.19661 1.20330 1.18668 1.68184 1.34172 1.15674 1.07011 1.21791 0.99179 1.00482 0.94432 1.21504 1.00268 0.94910 0.98299 1.19944 1.00597 0.96905 0.90026 0.92245 0.90824 0.91485 0.88078 0.91826 0.91570 0.90275 0.82024 0.76954 0.89456 0.89317 0.88991 0.92160 0.90576 0.91166 0.91417 0.91622 0.91689 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.52 37.16 0.35 -1.28 16 2 C 0.16 1.87 3.93 -67.93 -0.27 1.61 16 3 C -0.16 -1.39 8.83 37.16 0.33 -1.06 16 4 N -0.38 -5.81 3.54 -54.99 -0.19 -6.00 16 5 C 0.05 0.62 10.55 -17.37 -0.18 0.43 16 6 C -0.24 -3.42 5.89 -104.98 -0.62 -4.04 16 7 C 0.06 1.09 6.56 -82.34 -0.54 0.55 16 8 N -0.24 -4.76 12.31 33.75 0.42 -4.35 16 9 C 0.25 4.26 2.49 -68.77 -0.17 4.08 16 10 H 0.09 1.61 6.46 -51.93 -0.34 1.27 16 11 N -0.73 -15.49 5.24 -54.72 -0.29 -15.78 16 12 C 0.42 10.70 7.63 -155.33 -1.19 9.52 16 13 C -0.34 -8.41 8.95 -38.86 -0.35 -8.76 16 14 C -0.03 -0.85 10.15 -39.39 -0.40 -1.25 16 15 C -0.32 -8.49 9.83 -38.65 -0.38 -8.87 16 16 C 0.29 8.56 6.55 -85.00 -0.56 8.00 16 17 C -0.44 -12.44 9.14 -37.74 -0.34 -12.78 16 18 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 19 C 0.07 1.95 5.50 -17.34 -0.10 1.85 16 20 N -0.72 -19.86 11.46 55.55 0.64 -19.23 16 21 Si 0.90 19.49 29.56 -169.99 -5.02 14.46 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 N -0.53 -15.27 7.89 -10.33 -0.08 -15.35 16 26 C -0.12 -1.57 5.35 -26.52 -0.14 -1.71 16 27 C -0.11 -1.17 5.86 -26.51 -0.16 -1.33 16 28 C -0.04 -0.39 6.28 -27.59 -0.17 -0.56 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 0.46 7.16 -51.93 -0.37 0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.16 1.52 7.27 -52.49 -0.38 1.14 16 37 H 0.40 8.47 8.73 -40.82 -0.36 8.11 16 38 H 0.09 2.01 6.17 -52.49 -0.32 1.68 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 41 H 0.27 6.73 8.29 -40.82 -0.34 6.39 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -33.66 379.98 -10.92 -44.58 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.23 Total: 11.54 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -4.88 Total: -15.61 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.49 Total: -60.70 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.66 -10.92 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320737357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.784 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds