Wall clock time and date at job start Tue Mar 31 2020 15:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 N 1.46504 * 109.47323 * 119.99940 * 2 1 3 5 5 C 1.35197 * 126.00111 * 275.00152 * 4 2 1 6 6 C 1.34570 * 107.61233 * 179.97438 * 5 4 2 7 7 C 1.40490 * 108.04251 * 0.08210 * 6 5 4 8 8 N 1.30129 * 108.22332 * 359.89850 * 7 6 5 9 9 C 1.50950 * 123.48569 * 179.86380 * 7 6 5 10 10 H 1.08990 * 109.71620 * 103.04114 * 9 7 6 11 11 N 1.46504 * 109.71356 * 223.63791 * 9 7 6 12 12 C 1.38814 * 120.00006 * 274.39478 * 11 9 7 13 13 C 1.39799 * 119.58449 * 0.27879 * 12 11 9 14 14 C 1.38599 * 119.49028 * 180.25490 * 13 12 11 15 15 C 1.38387 * 118.68061 * 359.47582 * 14 13 12 16 16 C 1.40554 * 119.14849 * 0.25032 * 15 14 13 17 17 C 1.41321 * 119.78258 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00145 * 0.02562 * 17 16 15 19 19 C 1.40023 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.30751 * 119.99768 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00318 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46760 * 89.99720 * 21 19 17 23 23 H 1.48493 * 109.47533 * 209.99964 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00504 * 21 19 17 25 25 N 1.31959 * 119.58875 * 180.02562 * 12 11 9 26 26 C 1.53370 * 108.23896 * 343.33545 * 9 7 6 27 27 C 1.53043 * 109.74286 * 50.60250 * 26 9 7 28 28 C 1.50890 * 128.32523 * 180.17189 * 6 5 4 29 29 H 1.08995 * 109.47447 * 299.99694 * 1 2 3 30 30 H 1.08998 * 109.47693 * 60.00057 * 1 2 3 31 31 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47360 * 240.00238 * 2 1 3 33 33 H 1.08995 * 109.46784 * 59.99899 * 3 2 1 34 34 H 1.09004 * 109.46937 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47189 * 300.00055 * 3 2 1 36 36 H 1.07992 * 126.19171 * 359.94213 * 5 4 2 37 37 H 0.97001 * 120.00034 * 94.39186 * 11 9 7 38 38 H 1.07994 * 120.25853 * 0.02562 * 13 12 11 39 39 H 1.08002 * 120.66287 * 179.75684 * 14 13 12 40 40 H 1.08003 * 120.43145 * 180.23235 * 15 14 13 41 41 H 0.97005 * 119.99447 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.41808 * 170.72880 * 26 9 7 43 43 H 1.08998 * 109.42654 * 290.55369 * 26 9 7 44 44 H 1.09000 * 109.42054 * 168.25304 * 27 26 9 45 45 H 1.09004 * 109.36668 * 48.40418 * 27 26 9 46 46 H 1.08995 * 109.71417 * 282.96333 * 28 6 5 47 47 H 1.09001 * 109.71788 * 43.61480 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1934 -0.1375 2.4174 6 6 2.6534 -1.0997 3.2380 7 6 2.7675 -2.2869 2.4956 8 7 2.3868 -2.0421 1.2756 9 6 3.2573 -3.5901 3.0789 10 1 2.4113 -4.2530 3.2597 11 7 4.1940 -4.2266 2.1494 12 6 3.7158 -5.0347 1.1270 13 6 2.3386 -5.2305 0.9888 14 6 1.8636 -6.0419 -0.0295 15 6 2.7742 -6.6286 -0.8907 16 6 4.1464 -6.3886 -0.7035 17 6 5.0880 -6.9813 -1.5748 18 1 4.7524 -7.6160 -2.3816 19 6 6.4561 -6.7457 -1.3920 20 7 6.8624 -5.9776 -0.4150 21 14 7.7009 -7.5297 -2.5432 22 1 7.9515 -6.6234 -3.6925 23 1 8.9718 -7.7650 -1.8121 24 1 7.1688 -8.8239 -3.0404 25 7 4.5667 -5.6043 0.2947 26 6 3.9688 -3.2860 4.4031 27 6 3.0726 -2.4109 5.2825 28 6 3.0023 -0.9928 4.7021 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.9996 0.8905 2.6855 37 1 5.1482 -4.0833 2.2484 38 1 1.6501 -4.7561 1.6724 39 1 0.8036 -6.2094 -0.1513 40 1 2.4350 -7.2630 -1.6963 41 1 7.8102 -5.8147 -0.2882 42 1 4.1851 -4.2203 4.9212 43 1 4.9020 -2.7602 4.2009 44 1 3.4835 -2.3698 6.2912 45 1 2.0707 -2.8389 5.3163 46 1 3.9684 -0.5009 4.8149 47 1 2.2344 -0.4201 5.2223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320737357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:42 Heat of formation + Delta-G solvation = 88.523258 kcal Electronic energy + Delta-G solvation = -27932.135341 eV Core-core repulsion = 24308.151029 eV Total energy + Delta-G solvation = -3623.984312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.40782 -40.13252 -38.40806 -36.32832 -35.66237 -34.88833 -32.53483 -31.84860 -30.55110 -30.27682 -28.54195 -28.12876 -27.24191 -25.32557 -23.52779 -22.95922 -22.60805 -21.77298 -20.85956 -19.89807 -19.21988 -17.98935 -17.59969 -16.83136 -16.62735 -16.36246 -16.09032 -15.70855 -15.37737 -15.31401 -14.89843 -14.65935 -14.52098 -14.19890 -13.94072 -13.89334 -13.74415 -13.57948 -13.15239 -13.10436 -12.86344 -12.81802 -12.70474 -12.59230 -12.42590 -12.30075 -12.13784 -11.95170 -11.76198 -11.72521 -11.64307 -11.29838 -11.06817 -10.67718 -10.16905 -9.82631 -9.43313 -9.10264 -8.30643 -8.21317 -6.45941 1.07660 1.11459 1.34208 1.39571 1.53536 1.58495 1.67835 1.84702 2.25020 2.72674 2.94475 3.45095 3.77734 3.85030 3.92484 4.00411 4.06490 4.08386 4.12628 4.32763 4.36135 4.45028 4.46888 4.58266 4.60553 4.72183 4.75555 4.80470 4.87386 4.91873 4.96478 4.99832 5.00360 5.03052 5.10598 5.14142 5.17464 5.23945 5.32975 5.39139 5.41636 5.50814 5.73583 5.82369 5.97433 6.07760 6.22965 6.34093 6.56144 6.84228 6.91344 7.02500 7.24395 8.36443 8.53288 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.003736 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.561916 B = 7492.614504 C = 8304.997153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 C -0.150 4.150 4 N -0.383 5.383 5 C 0.056 3.944 6 C -0.250 4.250 7 C 0.042 3.958 8 N -0.312 5.312 9 C 0.241 3.759 10 H 0.077 0.923 11 N -0.721 5.721 12 C 0.408 3.592 13 C -0.340 4.340 14 C -0.035 4.035 15 C -0.344 4.344 16 C 0.260 3.740 17 C -0.475 4.475 18 H 0.085 0.915 19 C 0.026 3.974 20 N -0.754 5.754 21 Si 0.987 3.013 22 H -0.265 1.265 23 H -0.266 1.266 24 H -0.256 1.256 25 N -0.562 5.562 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.032 4.032 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.207 0.793 37 H 0.391 0.609 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.275 0.725 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 16.798 9.964 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 C -0.208 4.208 4 N -0.166 5.166 5 C -0.088 4.088 6 C -0.262 4.262 7 C -0.128 4.128 8 N -0.132 5.132 9 C 0.133 3.867 10 H 0.095 0.905 11 N -0.354 5.354 12 C 0.167 3.833 13 C -0.366 4.366 14 C -0.059 4.059 15 C -0.367 4.367 16 C 0.132 3.868 17 C -0.507 4.507 18 H 0.103 0.897 19 C -0.195 4.195 20 N -0.376 5.376 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.191 1.191 24 H -0.179 1.179 25 N -0.285 5.285 26 C -0.151 4.151 27 C -0.144 4.144 28 C -0.070 4.070 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.223 0.777 37 H 0.226 0.774 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.001 16.659 8.930 20.157 hybrid contribution -0.012 -0.420 -0.383 0.569 sum -7.012 16.239 8.547 19.645 Atomic orbital electron populations 1.22148 0.92402 1.01969 1.04510 1.21450 0.95791 0.93799 0.84611 1.22131 1.01338 0.91939 1.05437 1.49282 1.51205 1.06612 1.09513 1.22448 1.00978 1.00617 0.84784 1.20491 1.14187 0.91981 0.99537 1.23224 0.99783 0.98186 0.91578 1.77346 1.20275 0.94514 1.21077 1.19427 0.91995 0.86863 0.88389 0.90477 1.44248 1.08043 1.52110 1.31048 1.18802 0.89107 0.87784 0.87565 1.20696 0.93857 1.14395 1.07641 1.20922 0.98242 0.93696 0.93080 1.21631 0.94488 1.13744 1.06833 1.18661 0.90914 0.88005 0.89181 1.19901 0.91733 1.26728 1.12366 0.89714 1.26966 1.01086 0.94550 0.96922 1.70277 1.16329 1.25645 1.25378 0.85160 0.76738 0.79350 0.78070 1.18999 1.19085 1.17931 1.68183 1.35435 1.16854 1.07983 1.21787 0.99235 1.01509 0.92539 1.21515 0.99633 0.94210 0.99013 1.20050 1.01966 0.97290 0.87719 0.90642 0.88229 0.94537 0.91102 0.89519 0.93010 0.87939 0.77676 0.77428 0.88156 0.86146 0.88135 0.91473 0.90008 0.91325 0.88352 0.91797 0.90636 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.52 71.98 0.69 -2.21 16 2 C 0.14 3.40 3.93 44.99 0.18 3.58 16 3 C -0.15 -2.24 8.83 71.98 0.64 -1.60 16 4 N -0.38 -11.57 3.54 -327.89 -1.16 -12.73 16 5 C 0.06 1.34 10.55 83.33 0.88 2.22 16 6 C -0.25 -6.68 5.89 -20.10 -0.12 -6.80 16 7 C 0.04 1.50 6.56 43.44 0.28 1.79 16 8 N -0.31 -12.65 12.31 -47.13 -0.58 -13.23 16 9 C 0.24 8.50 2.49 44.45 0.11 8.61 16 10 H 0.08 2.85 6.46 -2.39 -0.02 2.84 16 11 N -0.72 -32.18 5.24 -327.05 -1.72 -33.89 16 12 C 0.41 21.89 7.63 133.42 1.02 22.91 16 13 C -0.34 -17.33 8.95 22.73 0.20 -17.13 16 14 C -0.04 -1.78 10.15 22.39 0.23 -1.55 16 15 C -0.34 -19.16 9.83 22.87 0.22 -18.93 16 16 C 0.26 15.90 6.55 40.18 0.26 16.16 16 17 C -0.48 -28.03 9.14 23.46 0.21 -27.81 16 18 H 0.08 4.70 7.85 -2.91 -0.02 4.68 16 19 C 0.03 1.42 5.50 85.29 0.47 1.89 16 20 N -0.75 -43.11 11.46 21.84 0.25 -42.86 16 21 Si 0.99 40.70 29.56 68.60 2.03 42.73 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 23 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 N -0.56 -34.10 7.89 -186.59 -1.47 -35.57 16 26 C -0.11 -2.82 5.35 30.73 0.16 -2.66 16 27 C -0.11 -1.93 5.86 30.74 0.18 -1.75 16 28 C -0.03 -0.58 6.28 30.04 0.19 -0.39 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.09 0.90 7.16 -2.39 -0.02 0.88 16 34 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.21 2.90 7.27 -2.91 -0.02 2.88 16 37 H 0.39 17.67 8.73 -92.71 -0.81 16.86 16 38 H 0.10 4.76 6.17 -2.91 -0.02 4.75 16 39 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 40 H 0.10 5.22 8.06 -2.91 -0.02 5.20 16 41 H 0.27 14.19 8.29 -92.70 -0.77 13.42 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -79.06 379.98 3.33 -75.73 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: 0.17 Total: 43.50 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.81 Total: -23.68 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -4.68 Total: -138.28 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -79.06 3.33 -75.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320737357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.253 kcal (2) G-P(sol) polarization free energy of solvation -79.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds