Wall clock time and date at job start Tue Mar 31 2020 15:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47562 * 2 1 4 4 N 1.46505 * 109.47290 * 120.00078 * 2 1 3 5 5 C 1.35190 * 126.00587 * 274.99962 * 4 2 1 6 6 C 1.34570 * 107.61957 * 180.02562 * 5 4 2 7 7 C 1.40483 * 108.03677 * 359.90240 * 6 5 4 8 8 N 1.30123 * 108.23165 * 0.12900 * 7 6 5 9 9 C 1.50953 * 123.48718 * 180.31359 * 7 6 5 10 10 H 1.08997 * 109.71775 * 256.92425 * 9 7 6 11 11 N 1.46501 * 109.71929 * 136.27494 * 9 7 6 12 12 C 1.38826 * 119.99528 * 84.99933 * 11 9 7 13 13 C 1.39796 * 119.58385 * 359.73067 * 12 11 9 14 14 C 1.38599 * 119.48595 * 179.78959 * 13 12 11 15 15 C 1.38386 * 118.68152 * 0.47119 * 14 13 12 16 16 C 1.40550 * 119.14888 * 359.75348 * 15 14 13 17 17 C 1.41317 * 119.78396 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.40029 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47291 * 119.99925 * 21 19 17 24 24 H 1.48497 * 109.47412 * 239.99986 * 21 19 17 25 25 N 1.31950 * 119.58267 * 179.97438 * 12 11 9 26 26 C 1.53373 * 108.20406 * 16.60242 * 9 7 6 27 27 C 1.53030 * 109.74881 * 309.35458 * 26 9 7 28 28 C 1.50886 * 128.32556 * 179.86853 * 6 5 4 29 29 H 1.09000 * 109.47126 * 59.99424 * 1 2 3 30 30 H 1.08994 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46895 * 299.99610 * 1 2 3 32 32 H 1.08999 * 109.47169 * 240.00150 * 2 1 3 33 33 H 1.08994 * 109.47372 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47371 * 300.00426 * 3 2 1 35 35 H 1.08999 * 109.46756 * 59.99897 * 3 2 1 36 36 H 1.08004 * 126.19163 * 0.05362 * 5 4 2 37 37 H 0.96999 * 120.00425 * 265.00446 * 11 9 7 38 38 H 1.08001 * 120.25600 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.65505 * 180.22685 * 14 13 12 40 40 H 1.07999 * 120.42266 * 179.72369 * 15 14 13 41 41 H 0.96991 * 120.00176 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.42745 * 69.43309 * 26 9 7 43 43 H 1.09003 * 109.42757 * 189.32478 * 26 9 7 44 44 H 1.08993 * 109.42312 * 311.65049 * 27 26 9 45 45 H 1.08997 * 109.42922 * 191.80221 * 27 26 9 46 46 H 1.08997 * 109.71978 * 316.23517 * 28 6 5 47 47 H 1.09000 * 109.71801 * 76.88669 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1934 -0.1377 2.4173 6 6 2.6545 -1.0996 3.2377 7 6 2.7653 -2.2875 2.4961 8 7 2.3864 -2.0424 1.2757 9 6 3.2459 -3.5932 3.0817 10 1 4.2763 -3.7758 2.7770 11 7 2.3907 -4.6880 2.6166 12 6 2.6465 -5.2980 1.3960 13 6 3.7189 -4.8568 0.6153 14 6 3.9751 -5.4701 -0.6009 15 6 3.1489 -6.5014 -1.0118 16 6 2.0838 -6.8964 -0.1842 17 6 1.2314 -7.9476 -0.5908 18 1 1.3998 -8.4450 -1.5346 19 6 0.1685 -8.3445 0.2298 20 7 -0.0351 -7.7428 1.3726 21 14 -0.9578 -9.7345 -0.3073 22 1 -0.5168 -10.2459 -1.6300 23 1 -0.9014 -10.8316 0.6919 24 1 -2.3509 -9.2309 -0.4113 25 7 1.8714 -6.2837 0.9853 26 6 3.1688 -3.4901 4.6100 27 6 3.8627 -2.2087 5.0775 28 6 3.0097 -0.9910 4.7002 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.9981 0.8900 2.6860 37 1 1.6458 -4.9867 3.1614 38 1 4.3448 -4.0463 0.9586 39 1 4.8008 -5.1468 -1.2175 40 1 3.3201 -6.9960 -1.9564 41 1 -0.7715 -8.0174 1.9409 42 1 2.1240 -3.4701 4.9198 43 1 3.6630 -4.3527 5.0570 44 1 4.8388 -2.1300 4.5991 45 1 3.9914 -2.2401 6.1594 46 1 3.5770 -0.0766 4.8740 47 1 2.0996 -0.9794 5.2998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320737358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:47 Heat of formation + Delta-G solvation = 108.234225 kcal Electronic energy + Delta-G solvation = -27958.283420 eV Core-core repulsion = 24335.153840 eV Total energy + Delta-G solvation = -3623.129581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26600 -38.26696 -37.12394 -35.11044 -34.26325 -33.07475 -30.88584 -30.02658 -29.37425 -28.80336 -27.52918 -26.97635 -25.21972 -24.21798 -21.94295 -21.58082 -21.11248 -20.20265 -19.75905 -18.71247 -17.25283 -16.55645 -16.14868 -15.41494 -15.18358 -14.89521 -14.64173 -14.38919 -14.08106 -13.75148 -13.52905 -13.35291 -13.28291 -12.94041 -12.76216 -12.64381 -12.51982 -12.15812 -11.97950 -11.88807 -11.68337 -11.49966 -11.21148 -11.16822 -11.07764 -10.87756 -10.77789 -10.65074 -10.47197 -10.28233 -9.94509 -9.76641 -9.42392 -8.94096 -8.79147 -8.03041 -7.76496 -7.36796 -6.38942 -6.20290 -4.33381 2.21274 2.67835 2.96603 3.05041 3.17467 3.22142 3.39823 3.42703 4.07110 4.28389 4.42096 4.72344 4.77704 4.89802 4.92551 4.97624 5.02713 5.12515 5.26099 5.29758 5.41006 5.46663 5.50801 5.61527 5.66062 5.70248 5.81873 5.87364 5.94848 6.00346 6.04381 6.12264 6.22307 6.27796 6.35486 6.37332 6.44966 6.77652 6.96827 7.01522 7.03042 7.09081 7.33029 7.37405 7.74611 7.95204 8.06857 8.17328 8.29746 8.50133 8.81868 8.93728 9.26623 10.38265 10.53965 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.003776 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.572964 B = 7412.708931 C = 8253.419843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 C -0.161 4.161 4 N -0.380 5.380 5 C 0.047 3.953 6 C -0.240 4.240 7 C 0.062 3.938 8 N -0.242 5.242 9 C 0.247 3.753 10 H 0.090 0.910 11 N -0.726 5.726 12 C 0.417 3.583 13 C -0.341 4.341 14 C -0.035 4.035 15 C -0.318 4.318 16 C 0.293 3.707 17 C -0.439 4.439 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.718 5.718 21 Si 0.902 3.098 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.276 1.276 25 N -0.529 5.529 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.036 4.036 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.162 0.838 37 H 0.395 0.605 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 17.063 5.963 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 C -0.219 4.219 4 N -0.163 5.163 5 C -0.097 4.097 6 C -0.252 4.252 7 C -0.110 4.110 8 N -0.061 5.061 9 C 0.137 3.863 10 H 0.108 0.892 11 N -0.361 5.361 12 C 0.178 3.822 13 C -0.367 4.367 14 C -0.059 4.059 15 C -0.341 4.341 16 C 0.166 3.834 17 C -0.472 4.472 18 H 0.099 0.901 19 C -0.151 4.151 20 N -0.341 5.341 21 Si 0.726 3.274 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.201 1.201 25 N -0.250 5.250 26 C -0.159 4.159 27 C -0.150 4.150 28 C -0.075 4.075 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.180 0.820 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.921 16.488 5.299 17.425 hybrid contribution -0.134 0.156 0.052 0.212 sum 1.786 16.644 5.351 17.574 Atomic orbital electron populations 1.22225 0.93968 1.03576 1.02429 1.21137 0.94609 0.92314 0.86428 1.22165 1.02165 0.94368 1.03187 1.49040 1.51664 1.07671 1.07929 1.21750 1.02657 0.99130 0.86178 1.20027 1.14261 0.93345 0.97602 1.23159 0.99822 0.96829 0.91189 1.77485 1.17828 0.91228 1.19525 1.19113 0.94763 0.80591 0.91795 0.89214 1.44077 1.34628 1.36721 1.20672 1.18420 0.89333 0.89437 0.84978 1.20526 1.06170 1.09613 1.00413 1.20559 0.96375 0.94488 0.94500 1.21489 1.03662 1.05865 1.03068 1.18165 0.89067 0.90058 0.86097 1.19566 1.09200 1.14016 1.04389 0.90080 1.26014 0.97795 0.96883 0.94447 1.70171 1.23496 1.32943 1.07444 0.86380 0.79997 0.81161 0.79843 1.18525 1.20015 1.20102 1.68182 1.28568 1.10763 1.17512 1.21789 1.01986 0.98294 0.93811 1.21501 0.99104 0.93837 1.00541 1.19943 0.99030 0.97915 0.90585 0.90818 0.91356 0.92256 0.88110 0.91628 0.90287 0.91818 0.82030 0.76954 0.89444 0.89313 0.88991 0.92217 0.91158 0.90585 0.91610 0.91423 0.91724 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.52 37.16 0.35 -1.46 16 2 C 0.16 1.88 3.93 -67.93 -0.27 1.62 16 3 C -0.16 -1.32 8.84 37.16 0.33 -0.99 16 4 N -0.38 -5.81 3.54 -54.99 -0.19 -6.01 16 5 C 0.05 0.62 10.55 -17.37 -0.18 0.43 16 6 C -0.24 -3.42 5.89 -104.98 -0.62 -4.04 16 7 C 0.06 1.09 6.50 -82.35 -0.54 0.55 16 8 N -0.24 -4.76 12.22 33.75 0.41 -4.34 16 9 C 0.25 4.26 2.49 -68.77 -0.17 4.09 16 10 H 0.09 1.60 6.50 -51.93 -0.34 1.26 16 11 N -0.73 -15.48 5.25 -54.72 -0.29 -15.77 16 12 C 0.42 10.69 7.63 -155.32 -1.18 9.51 16 13 C -0.34 -8.39 8.84 -38.87 -0.34 -8.74 16 14 C -0.03 -0.86 10.15 -39.39 -0.40 -1.26 16 15 C -0.32 -8.49 9.83 -38.66 -0.38 -8.87 16 16 C 0.29 8.55 6.55 -85.00 -0.56 7.99 16 17 C -0.44 -12.43 9.14 -37.74 -0.34 -12.78 16 18 H 0.08 2.17 7.85 -52.48 -0.41 1.75 16 19 C 0.07 1.95 5.50 -17.34 -0.10 1.85 16 20 N -0.72 -19.85 11.46 55.55 0.64 -19.22 16 21 Si 0.90 19.48 29.56 -169.99 -5.02 14.46 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 N -0.53 -15.25 7.89 -10.33 -0.08 -15.33 16 26 C -0.12 -1.56 5.35 -26.52 -0.14 -1.71 16 27 C -0.11 -1.17 5.87 -26.52 -0.16 -1.33 16 28 C -0.04 -0.39 6.28 -27.59 -0.17 -0.56 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 7.16 -51.93 -0.37 0.08 16 36 H 0.16 1.52 7.27 -52.48 -0.38 1.14 16 37 H 0.40 8.47 8.72 -40.82 -0.36 8.11 16 38 H 0.09 2.01 6.16 -52.49 -0.32 1.69 16 39 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.27 6.69 8.29 -40.82 -0.34 6.36 16 42 H 0.07 0.93 8.10 -51.93 -0.42 0.50 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -33.67 379.73 -10.92 -44.58 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -7.23 Total: 11.60 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -4.87 Total: -15.69 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.49 Total: -60.67 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.67 -10.92 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320737358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.816 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds