Wall clock time and date at job start Tue Mar 31 2020 15:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47562 * 2 1 4 4 N 1.46505 * 109.47290 * 120.00078 * 2 1 3 5 5 C 1.35190 * 126.00587 * 274.99962 * 4 2 1 6 6 C 1.34570 * 107.61957 * 180.02562 * 5 4 2 7 7 C 1.40483 * 108.03677 * 359.90240 * 6 5 4 8 8 N 1.30123 * 108.23165 * 0.12900 * 7 6 5 9 9 C 1.50953 * 123.48718 * 180.31359 * 7 6 5 10 10 H 1.08997 * 109.71775 * 256.92425 * 9 7 6 11 11 N 1.46501 * 109.71929 * 136.27494 * 9 7 6 12 12 C 1.38826 * 119.99528 * 84.99933 * 11 9 7 13 13 C 1.39796 * 119.58385 * 359.73067 * 12 11 9 14 14 C 1.38599 * 119.48595 * 179.78959 * 13 12 11 15 15 C 1.38386 * 118.68152 * 0.47119 * 14 13 12 16 16 C 1.40550 * 119.14888 * 359.75348 * 15 14 13 17 17 C 1.41317 * 119.78396 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.40029 * 120.00300 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47044 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47291 * 119.99925 * 21 19 17 24 24 H 1.48497 * 109.47412 * 239.99986 * 21 19 17 25 25 N 1.31950 * 119.58267 * 179.97438 * 12 11 9 26 26 C 1.53373 * 108.20406 * 16.60242 * 9 7 6 27 27 C 1.53030 * 109.74881 * 309.35458 * 26 9 7 28 28 C 1.50886 * 128.32556 * 179.86853 * 6 5 4 29 29 H 1.09000 * 109.47126 * 59.99424 * 1 2 3 30 30 H 1.08994 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46895 * 299.99610 * 1 2 3 32 32 H 1.08999 * 109.47169 * 240.00150 * 2 1 3 33 33 H 1.08994 * 109.47372 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47371 * 300.00426 * 3 2 1 35 35 H 1.08999 * 109.46756 * 59.99897 * 3 2 1 36 36 H 1.08004 * 126.19163 * 0.05362 * 5 4 2 37 37 H 0.96999 * 120.00425 * 265.00446 * 11 9 7 38 38 H 1.08001 * 120.25600 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.65505 * 180.22685 * 14 13 12 40 40 H 1.07999 * 120.42266 * 179.72369 * 15 14 13 41 41 H 0.96991 * 120.00176 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.42745 * 69.43309 * 26 9 7 43 43 H 1.09003 * 109.42757 * 189.32478 * 26 9 7 44 44 H 1.08993 * 109.42312 * 311.65049 * 27 26 9 45 45 H 1.08997 * 109.42922 * 191.80221 * 27 26 9 46 46 H 1.08997 * 109.71978 * 316.23517 * 28 6 5 47 47 H 1.09000 * 109.71801 * 76.88669 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1934 -0.1377 2.4173 6 6 2.6545 -1.0996 3.2377 7 6 2.7653 -2.2875 2.4961 8 7 2.3864 -2.0424 1.2757 9 6 3.2459 -3.5932 3.0817 10 1 4.2763 -3.7758 2.7770 11 7 2.3907 -4.6880 2.6166 12 6 2.6465 -5.2980 1.3960 13 6 3.7189 -4.8568 0.6153 14 6 3.9751 -5.4701 -0.6009 15 6 3.1489 -6.5014 -1.0118 16 6 2.0838 -6.8964 -0.1842 17 6 1.2314 -7.9476 -0.5908 18 1 1.3998 -8.4450 -1.5346 19 6 0.1685 -8.3445 0.2298 20 7 -0.0351 -7.7428 1.3726 21 14 -0.9578 -9.7345 -0.3073 22 1 -0.5168 -10.2459 -1.6300 23 1 -0.9014 -10.8316 0.6919 24 1 -2.3509 -9.2309 -0.4113 25 7 1.8714 -6.2837 0.9853 26 6 3.1688 -3.4901 4.6100 27 6 3.8627 -2.2087 5.0775 28 6 3.0097 -0.9910 4.7002 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.9981 0.8900 2.6860 37 1 1.6458 -4.9867 3.1614 38 1 4.3448 -4.0463 0.9586 39 1 4.8008 -5.1468 -1.2175 40 1 3.3201 -6.9960 -1.9564 41 1 -0.7715 -8.0174 1.9409 42 1 2.1240 -3.4701 4.9198 43 1 3.6630 -4.3527 5.0570 44 1 4.8388 -2.1300 4.5991 45 1 3.9914 -2.2401 6.1594 46 1 3.5770 -0.0766 4.8740 47 1 2.0996 -0.9794 5.2998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320737358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:46 Heat of formation + Delta-G solvation = 88.519337 kcal Electronic energy + Delta-G solvation = -27959.138322 eV Core-core repulsion = 24335.153840 eV Total energy + Delta-G solvation = -3623.984482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40744 -40.13191 -38.40915 -36.32917 -35.66542 -34.88929 -32.53500 -31.84648 -30.55527 -30.27598 -28.54187 -28.13755 -27.24043 -25.32781 -23.52624 -22.96145 -22.60204 -21.77199 -20.85831 -19.90909 -19.22289 -17.98633 -17.57893 -16.85537 -16.57603 -16.23433 -16.16715 -15.94999 -15.43168 -15.05170 -14.88470 -14.64916 -14.54960 -14.31617 -13.92116 -13.86437 -13.71659 -13.62486 -13.16260 -13.05527 -12.87919 -12.86505 -12.70634 -12.59142 -12.45608 -12.23569 -12.11079 -12.00646 -11.75916 -11.70544 -11.64010 -11.30919 -11.07471 -10.67594 -10.16659 -9.82523 -9.43359 -9.10210 -8.30662 -8.21493 -6.45925 1.07027 1.11267 1.34319 1.39455 1.55277 1.57063 1.68083 1.84874 2.24837 2.72685 2.94312 3.45613 3.77184 3.85277 3.92075 4.00148 4.06280 4.08601 4.12620 4.32638 4.36395 4.44457 4.46887 4.56677 4.59427 4.70931 4.76837 4.80649 4.86837 4.91827 4.96594 4.99989 5.00494 5.03114 5.09656 5.14243 5.16982 5.24282 5.33116 5.39186 5.41754 5.50861 5.73711 5.82487 5.97560 6.07822 6.23231 6.34269 6.56138 6.84294 6.91376 7.02586 7.24409 8.36470 8.53296 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.003776 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.572964 B = 7412.708931 C = 8253.419843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 C -0.148 4.148 4 N -0.383 5.383 5 C 0.056 3.944 6 C -0.250 4.250 7 C 0.042 3.958 8 N -0.312 5.312 9 C 0.241 3.759 10 H 0.078 0.922 11 N -0.721 5.721 12 C 0.407 3.593 13 C -0.339 4.339 14 C -0.035 4.035 15 C -0.344 4.344 16 C 0.260 3.740 17 C -0.475 4.475 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.754 5.754 21 Si 0.987 3.013 22 H -0.255 1.255 23 H -0.264 1.264 24 H -0.268 1.268 25 N -0.562 5.562 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.032 4.032 29 H 0.101 0.899 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.207 0.793 37 H 0.391 0.609 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.275 0.725 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 19.433 7.310 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 C -0.206 4.206 4 N -0.166 5.166 5 C -0.088 4.088 6 C -0.262 4.262 7 C -0.128 4.128 8 N -0.132 5.132 9 C 0.133 3.867 10 H 0.095 0.905 11 N -0.355 5.355 12 C 0.167 3.833 13 C -0.365 4.365 14 C -0.060 4.060 15 C -0.367 4.367 16 C 0.132 3.868 17 C -0.507 4.507 18 H 0.103 0.897 19 C -0.195 4.195 20 N -0.377 5.377 21 Si 0.807 3.193 22 H -0.179 1.179 23 H -0.189 1.189 24 H -0.193 1.193 25 N -0.284 5.284 26 C -0.151 4.151 27 C -0.144 4.144 28 C -0.070 4.070 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.223 0.777 37 H 0.226 0.774 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.772 18.900 6.671 20.121 hybrid contribution -0.036 -0.435 -0.363 0.568 sum 1.736 18.465 6.308 19.590 Atomic orbital electron populations 1.22172 0.93382 1.01357 1.04466 1.21446 0.95106 0.94166 0.84780 1.22116 1.01730 0.91446 1.05307 1.49287 1.51246 1.06522 1.09576 1.22449 1.00783 1.00718 0.84876 1.20488 1.14224 0.92047 0.99443 1.23225 1.00283 0.97768 0.91506 1.77352 1.20308 0.94268 1.21235 1.19427 0.93177 0.79494 0.94573 0.90467 1.44251 1.34844 1.37249 1.19125 1.18803 0.89180 0.88964 0.86338 1.20699 1.05936 1.09546 1.00310 1.20924 0.96704 0.93564 0.94767 1.21629 1.04200 1.07253 1.03599 1.18663 0.90227 0.90935 0.86947 1.19924 1.10627 1.14861 1.05282 0.89739 1.26962 0.98904 0.99531 0.94112 1.70274 1.24315 1.34495 1.08572 0.85111 0.77344 0.77262 0.79614 1.17876 1.18894 1.19293 1.68180 1.30003 1.12225 1.18038 1.21785 1.02430 1.00421 0.90433 1.21511 0.98501 0.92085 1.02272 1.20049 0.99840 0.99023 0.88120 0.88053 0.95580 0.90899 0.90515 0.92177 0.87975 0.89841 0.77676 0.77440 0.88122 0.86123 0.88145 0.91491 0.91355 0.89993 0.91752 0.88364 0.89033 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.52 71.98 0.69 -2.68 16 2 C 0.15 3.43 3.93 44.99 0.18 3.61 16 3 C -0.15 -2.01 8.84 71.98 0.64 -1.38 16 4 N -0.38 -11.57 3.54 -327.89 -1.16 -12.73 16 5 C 0.06 1.34 10.55 83.34 0.88 2.22 16 6 C -0.25 -6.68 5.89 -20.10 -0.12 -6.80 16 7 C 0.04 1.50 6.50 43.44 0.28 1.78 16 8 N -0.31 -12.63 12.22 -47.14 -0.58 -13.20 16 9 C 0.24 8.49 2.49 44.45 0.11 8.60 16 10 H 0.08 2.85 6.50 -2.39 -0.02 2.83 16 11 N -0.72 -32.19 5.25 -327.04 -1.72 -33.91 16 12 C 0.41 21.88 7.63 133.42 1.02 22.89 16 13 C -0.34 -17.27 8.84 22.73 0.20 -17.07 16 14 C -0.04 -1.79 10.15 22.39 0.23 -1.56 16 15 C -0.34 -19.15 9.83 22.87 0.22 -18.93 16 16 C 0.26 15.90 6.55 40.18 0.26 16.16 16 17 C -0.47 -28.03 9.14 23.46 0.21 -27.81 16 18 H 0.08 4.70 7.85 -2.91 -0.02 4.68 16 19 C 0.03 1.43 5.50 85.29 0.47 1.90 16 20 N -0.75 -43.15 11.46 21.84 0.25 -42.90 16 21 Si 0.99 40.76 29.56 68.60 2.03 42.79 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 N -0.56 -34.10 7.89 -186.59 -1.47 -35.57 16 26 C -0.11 -2.82 5.35 30.73 0.16 -2.66 16 27 C -0.11 -1.93 5.87 30.73 0.18 -1.75 16 28 C -0.03 -0.58 6.28 30.04 0.19 -0.39 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.82 7.16 -2.39 -0.02 0.81 16 36 H 0.21 2.90 7.27 -2.91 -0.02 2.88 16 37 H 0.39 17.68 8.72 -92.71 -0.81 16.87 16 38 H 0.10 4.77 6.16 -2.91 -0.02 4.76 16 39 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 40 H 0.10 5.22 8.06 -2.91 -0.02 5.20 16 41 H 0.27 14.16 8.29 -92.72 -0.77 13.39 16 42 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -79.21 379.73 3.32 -75.88 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: 0.17 Total: 43.50 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 5.80 Total: -23.86 kcal Atomic # 7 Polarization: -133.64 SS G_CDS: -4.67 Total: -138.31 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -79.21 3.32 -75.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320737358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.402 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds