Wall clock time and date at job start Tue Mar 31 2020 14:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48494 * 109.47010 * 269.99597 * 3 2 1 5 5 H 1.48502 * 109.47075 * 29.99995 * 3 2 1 6 6 H 1.48503 * 109.46824 * 149.99961 * 3 2 1 7 7 C 1.38817 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99884 * 163.07739 * 7 2 1 9 9 N 1.36934 * 119.99870 * 343.07348 * 7 2 1 10 10 C 1.46925 * 120.63188 * 331.84873 * 9 7 2 11 11 C 1.53188 * 108.77660 * 233.58116 * 10 9 7 12 12 C 1.53040 * 109.31596 * 305.36745 * 11 10 9 13 13 N 1.46905 * 109.45977 * 181.38156 * 12 11 10 14 14 C 1.46903 * 110.99400 * 154.99903 * 13 12 11 15 15 C 1.50705 * 109.46547 * 179.97438 * 14 13 12 16 16 N 1.30584 * 125.50763 * 275.00107 * 15 14 13 17 17 C 1.33798 * 109.54738 * 179.73051 * 16 15 14 18 18 C 1.36069 * 107.88307 * 0.43727 * 17 16 15 19 19 C 1.47900 * 126.75846 * 179.83678 * 18 17 16 20 20 C 1.39544 * 120.14272 * 179.64037 * 19 18 17 21 21 C 1.37966 * 119.85770 * 180.02562 * 20 19 18 22 22 C 1.38358 * 120.13906 * 0.02562 * 21 20 19 23 23 C 1.38350 * 120.28776 * 0.02562 * 22 21 20 24 24 C 1.37967 * 120.14105 * 359.97438 * 23 22 21 25 25 N 1.35066 * 125.50403 * 95.00604 * 15 14 13 26 26 H 0.96996 * 126.45232 * 359.97438 * 25 15 14 27 27 C 1.53039 * 109.53722 * 61.36108 * 12 11 10 28 28 C 1.46923 * 120.63125 * 151.82086 * 9 7 2 29 29 H 0.97001 * 120.00456 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.58544 * 113.79901 * 10 9 7 31 31 H 1.08998 * 109.70606 * 353.44389 * 10 9 7 32 32 H 1.09002 * 109.49915 * 185.41029 * 11 10 9 33 33 H 1.09008 * 109.52255 * 65.33270 * 11 10 9 34 34 H 1.08998 * 109.46097 * 301.35745 * 12 11 10 35 35 H 1.00897 * 110.99668 * 31.04938 * 13 12 11 36 36 H 1.08996 * 109.47092 * 60.00408 * 14 13 12 37 37 H 1.09000 * 109.47497 * 299.99979 * 14 13 12 38 38 H 1.07996 * 126.06426 * 180.27019 * 17 16 15 39 39 H 1.07997 * 120.06752 * 0.04525 * 20 19 18 40 40 H 1.07991 * 119.93040 * 180.27947 * 21 20 19 41 41 H 1.08005 * 119.85237 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.92805 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.07235 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.50001 * 58.58971 * 27 12 11 45 45 H 1.09002 * 109.49674 * 178.68586 * 27 12 11 46 46 H 1.09003 * 109.58977 * 246.20488 * 28 9 7 47 47 H 1.09006 * 109.58341 * 6.48764 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2261 -2.3399 1.2680 11 6 0.4973 -3.3189 2.4145 12 6 0.8119 -4.7006 1.8365 13 7 1.0401 -5.6499 2.9342 14 6 0.7599 -7.0269 2.5060 15 6 1.0052 -7.9701 3.6556 16 7 2.1606 -8.4832 3.9824 17 6 2.0138 -9.2703 5.0543 18 6 0.6999 -9.2543 5.4077 19 6 0.0772 -9.9835 6.5337 20 6 -1.2914 -9.8609 6.7766 21 6 -1.8661 -10.5434 7.8290 22 6 -1.0882 -11.3475 8.6430 23 6 0.2695 -11.4725 8.4082 24 6 0.8563 -10.7953 7.3591 25 7 0.0653 -8.4212 4.5143 26 1 -0.8790 -8.1995 4.5037 27 6 2.0674 -4.6172 0.9653 28 6 1.8138 -3.6529 -0.1977 29 1 -0.4851 0.8400 -0.0004 30 1 -0.6770 -2.6405 0.7367 31 1 0.0966 -1.3346 1.6688 32 1 -0.3833 -3.3837 3.0536 33 1 1.3469 -2.9676 3.0002 34 1 -0.0281 -5.0408 1.2309 35 1 0.4913 -5.4044 3.7445 36 1 1.4148 -7.2894 1.6752 37 1 -0.2797 -7.1040 2.1877 38 1 2.7985 -9.8228 5.5496 39 1 -1.8995 -9.2335 6.1420 40 1 -2.9259 -10.4529 8.0153 41 1 -1.5428 -11.8793 9.4658 42 1 0.8712 -12.1014 9.0475 43 1 1.9163 -10.8933 7.1771 44 1 2.9023 -4.2534 1.5642 45 1 2.3042 -5.6062 0.5729 46 1 1.0402 -4.0606 -0.8484 47 1 2.7333 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321296261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:59 Heat of formation + Delta-G solvation = 101.569040 kcal Electronic energy + Delta-G solvation = -26199.193965 eV Core-core repulsion = 22575.775360 eV Total energy + Delta-G solvation = -3623.418605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28224 -39.27475 -38.08576 -35.29060 -33.13086 -32.70198 -31.93492 -31.24871 -30.37859 -29.58304 -28.24851 -25.74158 -24.20340 -23.40473 -22.78264 -22.12416 -21.28335 -21.17732 -20.38106 -19.12091 -18.33477 -16.82716 -16.57279 -15.82976 -15.64209 -15.45924 -15.11013 -14.84076 -14.30764 -14.23005 -13.99834 -13.84583 -13.74911 -13.47590 -13.29368 -13.18846 -13.04960 -12.44123 -12.19941 -12.10413 -11.78327 -11.49515 -11.35877 -11.01289 -10.78460 -10.67321 -10.35246 -10.31691 -10.18648 -10.12966 -9.93176 -9.85359 -9.60342 -9.46037 -9.39253 -8.45540 -8.28879 -8.01913 -6.64630 -5.77248 -3.18702 0.53065 0.97251 2.01730 2.71332 2.92266 3.39346 3.46260 3.49726 3.52218 4.12788 4.33883 4.39309 4.47513 4.52360 4.52706 4.70782 4.88545 4.99345 5.05253 5.11835 5.32464 5.35956 5.41654 5.48470 5.51012 5.56053 5.66505 5.68674 5.75351 5.90130 5.99788 6.08922 6.17000 6.21227 6.35246 6.43478 6.46574 6.53193 6.56427 6.62817 6.65693 6.85220 7.04098 7.09447 7.26758 7.37165 7.48520 7.65470 7.82448 7.92017 8.47591 9.23753 9.87442 10.44209 11.31663 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.001915 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.135491 B =14614.818899 C =15002.570188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.174 3.826 11 C -0.141 4.141 12 C 0.098 3.902 13 N -0.678 5.678 14 C 0.143 3.857 15 C 0.234 3.766 16 N -0.468 5.468 17 C 0.006 3.994 18 C 0.001 3.999 19 C -0.002 4.002 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.105 4.105 25 N -0.562 5.562 26 H 0.417 0.583 27 C -0.118 4.118 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.335 0.665 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.172 0.828 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.014 0.986 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 -23.470 15.308 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.010 4.010 13 N -0.310 5.310 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.186 5.186 17 C -0.145 4.145 18 C -0.114 4.114 19 C -0.003 4.003 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.124 4.124 25 N -0.165 5.165 26 H 0.255 0.745 27 C -0.158 4.158 28 C 0.017 3.983 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.061 0.939 38 H 0.189 0.811 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.032 0.968 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.996 -23.209 14.729 27.651 hybrid contribution -1.906 0.782 0.502 2.121 sum -4.902 -22.427 15.231 27.550 Atomic orbital electron populations 1.70023 1.05276 1.25434 1.54291 1.25040 0.95288 0.98419 1.01041 0.86308 0.79226 0.83641 0.77697 1.21420 1.21621 1.20440 1.19193 0.92578 0.84825 1.41250 0.91678 1.44043 1.35812 1.01649 1.49919 1.20726 0.88673 0.98056 0.87776 1.22415 1.00146 0.95180 1.00297 1.21520 0.97154 0.91505 0.90851 1.60568 1.61931 0.99927 1.08536 1.20326 0.99810 0.86662 0.92019 1.23271 0.83990 1.00128 0.95581 1.70199 1.23199 1.11340 1.13889 1.22451 0.93733 1.01801 0.96508 1.19558 0.93614 1.01873 0.96306 1.17926 0.92916 0.96436 0.93032 1.21094 0.93855 1.00661 0.98689 1.21046 1.00008 0.96824 0.95037 1.21234 0.94168 0.99192 0.99767 1.21100 0.95083 0.99272 0.97414 1.21100 0.99994 0.96481 0.94804 1.43237 1.11615 1.37028 1.24638 0.74516 1.22019 0.97246 0.98697 0.97791 1.20940 0.97597 0.86834 0.92888 0.93710 0.96611 0.89304 0.93758 0.91674 0.94434 0.84732 0.87591 0.93899 0.81053 0.86709 0.85814 0.85905 0.85527 0.85274 0.91528 0.93289 0.96776 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.27 11.19 55.49 0.62 -25.65 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.87 2.99 -172.32 -0.52 -15.38 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.14 -2.63 5.36 -26.61 -0.14 -2.78 16 12 C 0.10 1.62 2.46 -67.67 -0.17 1.45 16 13 N -0.68 -9.62 6.30 -107.94 -0.68 -10.30 16 14 C 0.14 1.73 6.11 -4.97 -0.03 1.70 16 15 C 0.23 2.90 7.65 -155.32 -1.19 1.71 16 16 N -0.47 -6.71 11.22 -10.54 -0.12 -6.83 16 17 C 0.01 0.07 11.29 -17.47 -0.20 -0.13 16 18 C 0.00 0.01 6.96 -82.07 -0.57 -0.56 16 19 C 0.00 -0.02 5.87 -104.97 -0.62 -0.63 16 20 C -0.12 -0.98 9.72 -39.19 -0.38 -1.36 16 21 C -0.11 -0.76 10.03 -39.64 -0.40 -1.15 16 22 C -0.13 -0.80 10.04 -39.50 -0.40 -1.19 16 23 C -0.11 -0.72 10.03 -39.64 -0.40 -1.12 16 24 C -0.10 -0.81 9.58 -39.19 -0.38 -1.19 16 25 N -0.56 -5.59 6.07 -6.87 -0.04 -5.63 16 26 H 0.42 2.98 8.21 -40.82 -0.34 2.64 16 27 C -0.12 -2.12 5.59 -26.61 -0.15 -2.27 16 28 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.35 6.07 -51.93 -0.31 2.04 16 32 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 34 H 0.04 0.62 7.80 -51.93 -0.40 0.21 16 35 H 0.33 4.43 8.32 -39.29 -0.33 4.11 16 36 H 0.11 1.36 7.41 -51.93 -0.38 0.97 16 37 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 38 H 0.17 1.58 7.31 -52.49 -0.38 1.20 16 39 H 0.11 0.73 7.29 -52.49 -0.38 0.35 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.12 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.80 7.06 -52.48 -0.37 0.43 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.05 0.79 7.42 -51.93 -0.39 0.40 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -32.28 379.60 -12.37 -44.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.05 Total: 4.12 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -5.28 Total: -7.50 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.73 Total: -63.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.28 -12.37 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321296261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.227 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds