Wall clock time and date at job start Tue Mar 31 2020 14:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48494 * 109.47010 * 269.99597 * 3 2 1 5 5 H 1.48502 * 109.47075 * 29.99995 * 3 2 1 6 6 H 1.48503 * 109.46824 * 149.99961 * 3 2 1 7 7 C 1.38817 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99884 * 163.07739 * 7 2 1 9 9 N 1.36934 * 119.99870 * 343.07348 * 7 2 1 10 10 C 1.46925 * 120.63188 * 331.84873 * 9 7 2 11 11 C 1.53188 * 108.77660 * 233.58116 * 10 9 7 12 12 C 1.53040 * 109.31596 * 305.36745 * 11 10 9 13 13 N 1.46905 * 109.45977 * 181.38156 * 12 11 10 14 14 C 1.46903 * 110.99400 * 154.99903 * 13 12 11 15 15 C 1.50705 * 109.46547 * 179.97438 * 14 13 12 16 16 N 1.30584 * 125.50763 * 275.00107 * 15 14 13 17 17 C 1.33798 * 109.54738 * 179.73051 * 16 15 14 18 18 C 1.36069 * 107.88307 * 0.43727 * 17 16 15 19 19 C 1.47900 * 126.75846 * 179.83678 * 18 17 16 20 20 C 1.39544 * 120.14272 * 179.64037 * 19 18 17 21 21 C 1.37966 * 119.85770 * 180.02562 * 20 19 18 22 22 C 1.38358 * 120.13906 * 0.02562 * 21 20 19 23 23 C 1.38350 * 120.28776 * 0.02562 * 22 21 20 24 24 C 1.37967 * 120.14105 * 359.97438 * 23 22 21 25 25 N 1.35066 * 125.50403 * 95.00604 * 15 14 13 26 26 H 0.96996 * 126.45232 * 359.97438 * 25 15 14 27 27 C 1.53039 * 109.53722 * 61.36108 * 12 11 10 28 28 C 1.46923 * 120.63125 * 151.82086 * 9 7 2 29 29 H 0.97001 * 120.00456 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.58544 * 113.79901 * 10 9 7 31 31 H 1.08998 * 109.70606 * 353.44389 * 10 9 7 32 32 H 1.09002 * 109.49915 * 185.41029 * 11 10 9 33 33 H 1.09008 * 109.52255 * 65.33270 * 11 10 9 34 34 H 1.08998 * 109.46097 * 301.35745 * 12 11 10 35 35 H 1.00897 * 110.99668 * 31.04938 * 13 12 11 36 36 H 1.08996 * 109.47092 * 60.00408 * 14 13 12 37 37 H 1.09000 * 109.47497 * 299.99979 * 14 13 12 38 38 H 1.07996 * 126.06426 * 180.27019 * 17 16 15 39 39 H 1.07997 * 120.06752 * 0.04525 * 20 19 18 40 40 H 1.07991 * 119.93040 * 180.27947 * 21 20 19 41 41 H 1.08005 * 119.85237 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.92805 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.07235 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.50001 * 58.58971 * 27 12 11 45 45 H 1.09002 * 109.49674 * 178.68586 * 27 12 11 46 46 H 1.09003 * 109.58977 * 246.20488 * 28 9 7 47 47 H 1.09006 * 109.58341 * 6.48764 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 0.2261 -2.3399 1.2680 11 6 0.4973 -3.3189 2.4145 12 6 0.8119 -4.7006 1.8365 13 7 1.0401 -5.6499 2.9342 14 6 0.7599 -7.0269 2.5060 15 6 1.0052 -7.9701 3.6556 16 7 2.1606 -8.4832 3.9824 17 6 2.0138 -9.2703 5.0543 18 6 0.6999 -9.2543 5.4077 19 6 0.0772 -9.9835 6.5337 20 6 -1.2914 -9.8609 6.7766 21 6 -1.8661 -10.5434 7.8290 22 6 -1.0882 -11.3475 8.6430 23 6 0.2695 -11.4725 8.4082 24 6 0.8563 -10.7953 7.3591 25 7 0.0653 -8.4212 4.5143 26 1 -0.8790 -8.1995 4.5037 27 6 2.0674 -4.6172 0.9653 28 6 1.8138 -3.6529 -0.1977 29 1 -0.4851 0.8400 -0.0004 30 1 -0.6770 -2.6405 0.7367 31 1 0.0966 -1.3346 1.6688 32 1 -0.3833 -3.3837 3.0536 33 1 1.3469 -2.9676 3.0002 34 1 -0.0281 -5.0408 1.2309 35 1 0.4913 -5.4044 3.7445 36 1 1.4148 -7.2894 1.6752 37 1 -0.2797 -7.1040 2.1877 38 1 2.7985 -9.8228 5.5496 39 1 -1.8995 -9.2335 6.1420 40 1 -2.9259 -10.4529 8.0153 41 1 -1.5428 -11.8793 9.4658 42 1 0.8712 -12.1014 9.0475 43 1 1.9163 -10.8933 7.1771 44 1 2.9023 -4.2534 1.5642 45 1 2.3042 -5.6062 0.5729 46 1 1.0402 -4.0606 -0.8484 47 1 2.7333 -3.5130 -0.7663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321296261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:58 Heat of formation + Delta-G solvation = 82.224325 kcal Electronic energy + Delta-G solvation = -26200.032815 eV Core-core repulsion = 22575.775360 eV Total energy + Delta-G solvation = -3624.257455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.11125 -39.83399 -39.57602 -36.78929 -34.27322 -33.87450 -33.00545 -31.91858 -31.75261 -31.20595 -29.34618 -27.07470 -25.74961 -24.04190 -23.86145 -23.36165 -22.85806 -21.95472 -21.20414 -20.71077 -19.13814 -18.64238 -17.24841 -16.94079 -16.71127 -16.48214 -16.30165 -15.79661 -15.69182 -15.36074 -15.29688 -14.96627 -14.80028 -14.59212 -14.45521 -14.22372 -13.84235 -13.73218 -13.65891 -13.44128 -13.06040 -12.89476 -12.55196 -12.42807 -12.29242 -12.10891 -11.98744 -11.98110 -11.76463 -11.29160 -11.20106 -11.12508 -11.01714 -10.53539 -10.50406 -9.90050 -9.41802 -8.78185 -8.66321 -7.87486 -5.31727 -0.09311 0.46491 1.26368 1.46330 1.47942 1.57987 1.93952 2.06323 2.51912 2.95902 3.16348 3.29256 3.42742 3.71151 3.71858 3.86565 3.99563 4.02638 4.06062 4.17762 4.26533 4.33936 4.43505 4.45928 4.54032 4.55491 4.59634 4.71583 4.72169 4.88884 4.95343 4.97660 4.99278 5.02764 5.11578 5.13576 5.27068 5.43317 5.48529 5.54492 5.59398 5.60108 5.65881 5.67827 5.73917 6.02214 6.03434 6.35721 6.38928 6.41066 7.06208 7.16127 7.87626 8.38791 9.19061 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.001915 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.135491 B =14614.818899 C =15002.570188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.126 4.126 12 C 0.111 3.889 13 N -0.682 5.682 14 C 0.147 3.853 15 C 0.220 3.780 16 N -0.505 5.505 17 C -0.022 4.022 18 C 0.015 3.985 19 C -0.027 4.027 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.113 4.113 25 N -0.550 5.550 26 H 0.430 0.570 27 C -0.106 4.106 28 C 0.141 3.859 29 H 0.250 0.750 30 H 0.000 1.000 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.343 0.657 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.187 0.813 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.138 0.862 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.017 0.983 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -25.293 16.935 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.053 3.947 11 C -0.166 4.166 12 C 0.002 3.998 13 N -0.314 5.314 14 C 0.017 3.983 15 C -0.044 4.044 16 N -0.225 5.225 17 C -0.171 4.171 18 C -0.100 4.100 19 C -0.028 4.028 20 C -0.151 4.151 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.132 4.132 25 N -0.155 5.155 26 H 0.270 0.730 27 C -0.146 4.146 28 C 0.015 3.985 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.204 0.796 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.156 0.844 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.035 0.965 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.617 -25.063 16.364 30.150 hybrid contribution -1.754 1.214 0.076 2.135 sum -5.372 -23.849 16.440 29.460 Atomic orbital electron populations 1.70164 1.06538 1.25817 1.55534 1.25769 0.96087 1.01385 1.01357 0.85312 0.78065 0.79684 0.77611 1.21040 1.21733 1.19821 1.19490 0.92773 0.86194 1.40772 0.91930 1.44317 1.36006 1.02349 1.50778 1.20547 0.87830 0.97512 0.88788 1.22161 1.00692 0.95266 0.98452 1.21231 0.96481 0.90793 0.91277 1.60400 1.62563 1.00562 1.07917 1.20290 1.01117 0.85132 0.91742 1.23145 0.84189 1.00778 0.96252 1.70119 1.24640 1.12532 1.15187 1.22775 0.95007 1.02632 0.96710 1.19814 0.93310 1.00861 0.96057 1.18031 0.93716 0.97717 0.93385 1.21317 0.93578 1.00921 0.99250 1.21356 1.01174 0.96574 0.94690 1.21617 0.94185 0.98531 0.99956 1.21418 0.95610 0.99187 0.97239 1.21344 1.00593 0.96282 0.94953 1.43142 1.12063 1.36398 1.23876 0.72970 1.21840 0.97392 0.98748 0.96571 1.21072 0.97305 0.85932 0.94168 0.94092 0.98180 0.92772 0.91131 0.93130 0.93618 0.83841 0.88305 0.91332 0.79632 0.85672 0.83894 0.83624 0.83356 0.84438 0.93299 0.90866 0.96480 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 11.19 21.65 0.24 -55.25 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 3 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.26 -14.74 9.58 84.04 0.81 -13.94 16 8 H 0.06 3.47 7.89 -2.91 -0.02 3.44 16 9 N -0.61 -31.19 2.99 -699.09 -2.09 -33.28 16 10 C 0.18 8.62 5.30 86.36 0.46 9.07 16 11 C -0.13 -4.64 5.36 30.67 0.16 -4.48 16 12 C 0.11 3.50 2.46 44.94 0.11 3.61 16 13 N -0.68 -18.10 6.30 -495.42 -3.12 -21.22 16 14 C 0.15 3.28 6.11 85.56 0.52 3.81 16 15 C 0.22 5.19 7.65 138.10 1.06 6.24 16 16 N -0.51 -14.26 11.22 -187.27 -2.10 -16.36 16 17 C -0.02 -0.50 11.29 83.89 0.95 0.44 16 18 C 0.02 0.30 6.96 40.28 0.28 0.58 16 19 C -0.03 -0.45 5.87 -20.09 -0.12 -0.57 16 20 C -0.13 -1.83 9.72 22.52 0.22 -1.61 16 21 C -0.12 -1.34 10.03 22.23 0.22 -1.11 16 22 C -0.12 -1.24 10.04 22.33 0.22 -1.02 16 23 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 24 C -0.11 -1.57 9.58 22.52 0.22 -1.35 16 25 N -0.55 -10.11 6.07 -175.65 -1.07 -11.17 16 26 H 0.43 5.27 8.21 -92.71 -0.76 4.51 16 27 C -0.11 -3.71 5.59 30.67 0.17 -3.53 16 28 C 0.14 5.96 6.52 86.36 0.56 6.52 16 29 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.05 2.96 6.07 -2.39 -0.01 2.95 16 32 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 33 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 35 H 0.34 8.33 8.32 -89.70 -0.75 7.58 16 36 H 0.10 2.36 7.41 -2.39 -0.02 2.34 16 37 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 38 H 0.19 3.39 7.31 -2.91 -0.02 3.36 16 39 H 0.13 1.34 7.29 -2.91 -0.02 1.32 16 40 H 0.14 0.97 8.06 -2.92 -0.02 0.94 16 41 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.14 1.55 7.06 -2.91 -0.02 1.53 16 44 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.07 2.22 7.42 -2.39 -0.02 2.20 16 46 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 2.20 7.93 -2.38 -0.02 2.18 16 Total: -1.00 -70.79 379.60 -0.14 -70.93 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.52 Total: 19.57 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.48 Total: -0.81 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -8.14 Total: -137.28 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.79 -0.14 -70.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321296261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.157 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds