Wall clock time and date at job start Tue Mar 31 2020 15:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47127 * 2 1 4 4 N 1.46498 * 109.47300 * 120.00388 * 2 1 3 5 5 N 1.40303 * 126.08930 * 300.04198 * 4 2 1 6 6 C 1.31068 * 108.26722 * 180.02562 * 5 4 2 7 7 C 1.39293 * 108.08112 * 359.97438 * 6 5 4 8 8 C 1.34322 * 126.09472 * 119.99559 * 4 2 1 9 9 C 1.50828 * 128.03599 * 359.91965 * 8 4 2 10 10 H 1.08998 * 109.67901 * 76.83061 * 9 8 4 11 11 N 1.46500 * 109.67924 * 316.31558 * 9 8 4 12 12 C 1.38823 * 119.99904 * 155.51779 * 11 9 8 13 13 C 1.39800 * 119.58561 * 359.72356 * 12 11 9 14 14 C 1.38595 * 119.49325 * 179.76818 * 13 12 11 15 15 C 1.38396 * 118.67968 * 0.49917 * 14 13 12 16 16 C 1.40562 * 119.14535 * 359.74682 * 15 14 13 17 17 C 1.41314 * 119.78022 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00049 * 353.65650 * 17 16 15 19 19 C 1.40017 * 119.99946 * 173.66188 * 17 16 15 20 20 N 1.30754 * 120.00107 * 6.28806 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 186.28377 * 19 17 16 22 22 H 1.48501 * 109.46850 * 94.98283 * 21 19 17 23 23 H 1.48497 * 109.47286 * 214.98405 * 21 19 17 24 24 H 1.48504 * 109.46876 * 334.98887 * 21 19 17 25 25 N 1.31950 * 119.58409 * 179.97438 * 12 11 9 26 26 C 1.53358 * 108.38581 * 196.55171 * 9 8 4 27 27 C 1.53097 * 109.51528 * 310.07028 * 26 9 8 28 28 C 1.50843 * 127.89741 * 179.83996 * 7 6 5 29 29 H 1.08996 * 109.46931 * 299.99935 * 1 2 3 30 30 H 1.09005 * 109.47083 * 59.99958 * 1 2 3 31 31 H 1.09002 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47178 * 240.00259 * 2 1 3 33 33 H 1.08994 * 109.47606 * 300.00146 * 3 2 1 34 34 H 1.09005 * 109.47349 * 60.00232 * 3 2 1 35 35 H 1.09006 * 109.47040 * 179.97438 * 3 2 1 36 36 H 1.08007 * 125.95740 * 179.97438 * 6 5 4 37 37 H 0.96993 * 119.99864 * 335.51754 * 11 9 8 38 38 H 1.08001 * 120.25221 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.66179 * 180.24623 * 14 13 12 40 40 H 1.07990 * 120.42522 * 179.76817 * 15 14 13 41 41 H 0.97000 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.46186 * 70.07172 * 26 9 8 43 43 H 1.08996 * 109.46446 * 190.05115 * 26 9 8 44 44 H 1.09000 * 109.45643 * 310.25925 * 27 26 9 45 45 H 1.08997 * 109.46168 * 190.28131 * 27 26 9 46 46 H 1.09001 * 109.68399 * 316.36967 * 28 7 6 47 47 H 1.09004 * 109.67861 * 76.89196 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7588 -0.3250 2.5255 6 6 2.3645 -1.1802 3.3126 7 6 3.0239 -2.1112 2.5135 8 6 2.7938 -1.7873 1.2155 9 6 3.3387 -2.5610 0.0410 10 1 4.1821 -2.0239 -0.3929 11 7 2.2899 -2.7304 -0.9677 12 6 2.6322 -2.9349 -2.2974 13 6 3.9805 -2.9719 -2.6652 14 6 4.3202 -3.1810 -3.9925 15 6 3.3059 -3.3375 -4.9210 16 6 1.9690 -3.2850 -4.4898 17 6 0.9228 -3.4437 -5.4263 18 1 1.1465 -3.5019 -6.4813 19 6 -0.4041 -3.5253 -4.9866 20 7 -0.6877 -3.3321 -3.7249 21 14 -1.7691 -3.9100 -6.2024 22 1 -2.0472 -5.3687 -6.1890 23 1 -2.9971 -3.1684 -5.8189 24 1 -1.3479 -3.4990 -7.5658 25 7 1.6809 -3.0870 -3.1990 26 6 3.8031 -3.9347 0.5403 27 6 4.7037 -3.7560 1.7653 28 6 3.8599 -3.2859 2.9569 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 2.3542 -1.1655 4.3926 37 1 1.3563 -2.6997 -0.7064 38 1 4.7515 -2.8427 -1.9200 39 1 5.3558 -3.2170 -4.2969 40 1 3.5385 -3.4981 -5.9632 41 1 -1.6069 -3.3883 -3.4203 42 1 2.9347 -4.5348 0.8125 43 1 4.3599 -4.4390 -0.2495 44 1 5.4704 -3.0127 1.5470 45 1 5.1782 -4.7066 2.0090 46 1 4.5156 -2.9826 3.7731 47 1 3.2094 -4.0947 3.2896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324084779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:39 Heat of formation + Delta-G solvation = 105.188351 kcal Electronic energy + Delta-G solvation = -28519.744739 eV Core-core repulsion = 24896.483079 eV Total energy + Delta-G solvation = -3623.261660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50197 -38.45062 -36.80992 -35.77525 -34.05819 -33.15571 -31.01429 -30.33244 -29.25939 -28.94851 -27.34862 -27.13361 -25.44664 -23.14345 -22.81827 -21.86079 -21.51247 -20.49060 -19.45616 -18.67854 -17.46029 -16.95878 -16.04270 -15.45852 -14.85023 -14.75572 -14.51849 -14.36403 -14.28719 -13.93508 -13.70807 -13.38630 -13.27131 -12.99831 -12.92223 -12.54717 -12.40965 -12.17679 -12.04416 -11.96858 -11.69771 -11.31614 -11.28193 -11.15627 -11.03638 -10.99701 -10.80636 -10.68438 -10.49195 -10.44603 -10.24203 -9.97948 -9.57019 -9.15704 -8.93447 -8.07452 -7.97085 -7.58431 -6.63939 -6.40287 -4.52943 2.00789 2.63821 2.81565 2.91315 3.08298 3.11333 3.16240 3.23892 3.94167 4.05356 4.57073 4.64709 4.76518 4.98755 5.03526 5.05098 5.14406 5.20141 5.33347 5.47932 5.52252 5.65133 5.68417 5.72319 5.79412 5.85154 5.88690 5.97257 5.97577 6.02752 6.08951 6.17337 6.19932 6.28590 6.36317 6.39208 6.43286 6.57319 6.76724 6.82843 6.85215 6.87249 7.18078 7.24049 7.51201 7.72394 7.84318 7.91040 8.08830 8.26723 8.55799 8.73486 9.03584 10.16362 10.32937 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004172 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.820589 B = 6709.052601 C = 7690.169472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 C -0.157 4.157 4 N -0.342 5.342 5 N -0.299 5.299 6 C 0.044 3.956 7 C -0.240 4.240 8 C 0.083 3.917 9 C 0.232 3.768 10 H 0.092 0.908 11 N -0.735 5.735 12 C 0.411 3.589 13 C -0.367 4.367 14 C -0.031 4.031 15 C -0.314 4.314 16 C 0.293 3.707 17 C -0.433 4.433 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.715 5.715 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.529 5.529 26 C -0.127 4.127 27 C -0.116 4.116 28 C -0.037 4.037 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.177 0.823 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.269 0.731 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 3.043 10.938 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 C -0.215 4.215 4 N -0.123 5.123 5 N -0.120 5.120 6 C -0.141 4.141 7 C -0.252 4.252 8 C -0.047 4.047 9 C 0.123 3.877 10 H 0.110 0.890 11 N -0.371 5.371 12 C 0.171 3.829 13 C -0.393 4.393 14 C -0.055 4.055 15 C -0.337 4.337 16 C 0.166 3.834 17 C -0.465 4.465 18 H 0.101 0.899 19 C -0.152 4.152 20 N -0.336 5.336 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.185 1.185 25 N -0.250 5.250 26 C -0.167 4.167 27 C -0.155 4.155 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.194 0.806 37 H 0.231 0.769 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.346 4.249 11.161 12.402 hybrid contribution 0.392 -0.921 -0.582 1.158 sum 3.738 3.328 10.579 11.703 Atomic orbital electron populations 1.22049 0.93127 1.03276 1.02726 1.21624 0.95916 0.93839 0.84211 1.22093 1.01461 0.94875 1.03028 1.48580 1.37720 1.20628 1.05397 1.77404 1.24174 1.23860 0.86593 1.23462 0.97273 0.93675 0.99651 1.19858 1.10694 1.03401 0.91221 1.21155 0.96447 0.90349 0.96772 1.19322 0.90759 0.93924 0.83717 0.89021 1.44290 1.07192 1.81912 1.03730 1.18458 0.89379 0.90145 0.84896 1.20618 0.94289 1.27822 0.96598 1.20597 0.96947 0.95032 0.92927 1.21553 0.94138 1.19646 0.98346 1.18180 0.90401 0.86616 0.88194 1.19591 0.90179 1.42649 0.94106 0.89869 1.26027 0.99989 0.93730 0.95499 1.70142 1.19503 1.29110 1.14874 0.86381 0.80096 0.79225 0.81502 1.19559 1.20237 1.18546 1.68196 1.31493 1.24128 1.01167 1.22066 1.00187 0.96702 0.97701 1.21593 0.97958 1.01245 0.94674 1.19965 0.96236 0.94068 0.97277 0.91855 0.90622 0.91782 0.86254 0.90698 0.91549 0.92412 0.80580 0.76890 0.89054 0.88915 0.88707 0.91948 0.91247 0.90425 0.91843 0.91483 0.91499 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.46 37.16 0.35 -1.90 16 2 C 0.15 2.20 3.26 -67.93 -0.22 1.98 16 3 C -0.16 -2.06 9.46 37.16 0.35 -1.71 16 4 N -0.34 -5.35 3.26 -50.69 -0.17 -5.52 16 5 N -0.30 -4.66 12.45 30.54 0.38 -4.27 16 6 C 0.04 0.59 12.00 -17.49 -0.21 0.38 16 7 C -0.24 -3.29 5.91 -105.05 -0.62 -3.91 16 8 C 0.08 1.27 6.27 -82.33 -0.52 0.76 16 9 C 0.23 3.64 2.19 -68.83 -0.15 3.49 16 10 H 0.09 1.48 6.44 -51.93 -0.33 1.15 16 11 N -0.73 -13.93 3.39 -54.79 -0.19 -14.12 16 12 C 0.41 9.33 7.64 -155.33 -1.19 8.15 16 13 C -0.37 -7.92 9.02 -38.87 -0.35 -8.27 16 14 C -0.03 -0.68 10.15 -39.39 -0.40 -1.08 16 15 C -0.31 -7.63 9.83 -38.65 -0.38 -8.01 16 16 C 0.29 7.82 6.54 -85.00 -0.56 7.26 16 17 C -0.43 -11.37 9.13 -37.75 -0.34 -11.72 16 18 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 19 C 0.07 1.81 5.49 -17.34 -0.10 1.71 16 20 N -0.71 -18.34 11.49 55.55 0.64 -17.70 16 21 Si 0.90 18.34 29.56 -169.99 -5.03 13.32 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 N -0.53 -13.80 7.92 -10.33 -0.08 -13.89 16 26 C -0.13 -1.78 5.45 -26.50 -0.14 -1.92 16 27 C -0.12 -1.30 5.90 -26.48 -0.16 -1.45 16 28 C -0.04 -0.41 6.28 -27.61 -0.17 -0.58 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.12 2.06 6.02 -51.92 -0.31 1.75 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.40 7.91 8.44 -40.82 -0.34 7.57 16 38 H 0.09 1.74 5.99 -52.49 -0.31 1.43 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 42 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 43 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 44 H 0.06 0.70 8.11 -51.93 -0.42 0.27 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -28.36 377.80 -10.72 -39.08 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -7.17 Total: 14.22 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -4.80 Total: -16.82 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.59 Total: -55.49 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.36 -10.72 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324084779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.272 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds