Wall clock time and date at job start Tue Mar 31 2020 15:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47127 * 2 1 4 4 N 1.46498 * 109.47300 * 120.00388 * 2 1 3 5 5 N 1.40303 * 126.08930 * 300.04198 * 4 2 1 6 6 C 1.31068 * 108.26722 * 180.02562 * 5 4 2 7 7 C 1.39293 * 108.08112 * 359.97438 * 6 5 4 8 8 C 1.34322 * 126.09472 * 119.99559 * 4 2 1 9 9 C 1.50828 * 128.03599 * 359.91965 * 8 4 2 10 10 H 1.08998 * 109.67901 * 76.83061 * 9 8 4 11 11 N 1.46500 * 109.67924 * 316.31558 * 9 8 4 12 12 C 1.38823 * 119.99904 * 155.51779 * 11 9 8 13 13 C 1.39800 * 119.58561 * 359.72356 * 12 11 9 14 14 C 1.38595 * 119.49325 * 179.76818 * 13 12 11 15 15 C 1.38396 * 118.67968 * 0.49917 * 14 13 12 16 16 C 1.40562 * 119.14535 * 359.74682 * 15 14 13 17 17 C 1.41314 * 119.78022 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00049 * 353.65650 * 17 16 15 19 19 C 1.40017 * 119.99946 * 173.66188 * 17 16 15 20 20 N 1.30754 * 120.00107 * 6.28806 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 186.28377 * 19 17 16 22 22 H 1.48501 * 109.46850 * 94.98283 * 21 19 17 23 23 H 1.48497 * 109.47286 * 214.98405 * 21 19 17 24 24 H 1.48504 * 109.46876 * 334.98887 * 21 19 17 25 25 N 1.31950 * 119.58409 * 179.97438 * 12 11 9 26 26 C 1.53358 * 108.38581 * 196.55171 * 9 8 4 27 27 C 1.53097 * 109.51528 * 310.07028 * 26 9 8 28 28 C 1.50843 * 127.89741 * 179.83996 * 7 6 5 29 29 H 1.08996 * 109.46931 * 299.99935 * 1 2 3 30 30 H 1.09005 * 109.47083 * 59.99958 * 1 2 3 31 31 H 1.09002 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47178 * 240.00259 * 2 1 3 33 33 H 1.08994 * 109.47606 * 300.00146 * 3 2 1 34 34 H 1.09005 * 109.47349 * 60.00232 * 3 2 1 35 35 H 1.09006 * 109.47040 * 179.97438 * 3 2 1 36 36 H 1.08007 * 125.95740 * 179.97438 * 6 5 4 37 37 H 0.96993 * 119.99864 * 335.51754 * 11 9 8 38 38 H 1.08001 * 120.25221 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.66179 * 180.24623 * 14 13 12 40 40 H 1.07990 * 120.42522 * 179.76817 * 15 14 13 41 41 H 0.97000 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.46186 * 70.07172 * 26 9 8 43 43 H 1.08996 * 109.46446 * 190.05115 * 26 9 8 44 44 H 1.09000 * 109.45643 * 310.25925 * 27 26 9 45 45 H 1.08997 * 109.46168 * 190.28131 * 27 26 9 46 46 H 1.09001 * 109.68399 * 316.36967 * 28 7 6 47 47 H 1.09004 * 109.67861 * 76.89196 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7588 -0.3250 2.5255 6 6 2.3645 -1.1802 3.3126 7 6 3.0239 -2.1112 2.5135 8 6 2.7938 -1.7873 1.2155 9 6 3.3387 -2.5610 0.0410 10 1 4.1821 -2.0239 -0.3929 11 7 2.2899 -2.7304 -0.9677 12 6 2.6322 -2.9349 -2.2974 13 6 3.9805 -2.9719 -2.6652 14 6 4.3202 -3.1810 -3.9925 15 6 3.3059 -3.3375 -4.9210 16 6 1.9690 -3.2850 -4.4898 17 6 0.9228 -3.4437 -5.4263 18 1 1.1465 -3.5019 -6.4813 19 6 -0.4041 -3.5253 -4.9866 20 7 -0.6877 -3.3321 -3.7249 21 14 -1.7691 -3.9100 -6.2024 22 1 -2.0472 -5.3687 -6.1890 23 1 -2.9971 -3.1684 -5.8189 24 1 -1.3479 -3.4990 -7.5658 25 7 1.6809 -3.0870 -3.1990 26 6 3.8031 -3.9347 0.5403 27 6 4.7037 -3.7560 1.7653 28 6 3.8599 -3.2859 2.9569 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 2.3542 -1.1655 4.3926 37 1 1.3563 -2.6997 -0.7064 38 1 4.7515 -2.8427 -1.9200 39 1 5.3558 -3.2170 -4.2969 40 1 3.5385 -3.4981 -5.9632 41 1 -1.6069 -3.3883 -3.4203 42 1 2.9347 -4.5348 0.8125 43 1 4.3599 -4.4390 -0.2495 44 1 5.4704 -3.0127 1.5470 45 1 5.1782 -4.7066 2.0090 46 1 4.5156 -2.9826 3.7731 47 1 3.2094 -4.0947 3.2896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324084779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:38 Heat of formation + Delta-G solvation = 92.015679 kcal Electronic energy + Delta-G solvation = -28520.315949 eV Core-core repulsion = 24896.483079 eV Total energy + Delta-G solvation = -3623.832870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63409 -40.17573 -38.08413 -37.02355 -35.60036 -34.73090 -32.49990 -31.96523 -30.61528 -30.23822 -28.64463 -28.31543 -27.28643 -24.37968 -23.94544 -23.43458 -22.80157 -22.16893 -20.62810 -19.84377 -19.25495 -18.33914 -17.56253 -16.86612 -16.49901 -16.21183 -15.80056 -15.71865 -15.42227 -15.26929 -15.10547 -14.67598 -14.63787 -14.31363 -14.20464 -13.93416 -13.81525 -13.49496 -13.28086 -13.19108 -12.99323 -12.88473 -12.72095 -12.55293 -12.46656 -12.35396 -12.25796 -12.09384 -11.79140 -11.71836 -11.54749 -11.33898 -11.25245 -10.71132 -10.26341 -9.83664 -9.44362 -9.15458 -8.35201 -8.24398 -6.46810 0.84295 1.05198 1.34989 1.40964 1.49854 1.53798 1.56574 1.85123 2.23983 2.56810 2.91731 3.39060 3.49559 3.86095 3.89599 3.96820 4.03921 4.09518 4.15405 4.18997 4.31805 4.40128 4.48596 4.55297 4.60212 4.66880 4.67724 4.71792 4.78332 4.84556 4.94616 4.97587 5.01647 5.04041 5.08140 5.08822 5.12734 5.25492 5.29542 5.35136 5.40478 5.48335 5.71493 5.83781 5.96415 6.05638 6.08240 6.21408 6.50700 6.75914 6.81390 6.89134 7.18186 8.32747 8.49765 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004172 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.820589 B = 6709.052601 C = 7690.169472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.146 3.854 3 C -0.148 4.148 4 N -0.352 5.352 5 N -0.320 5.320 6 C 0.045 3.955 7 C -0.234 4.234 8 C 0.059 3.941 9 C 0.234 3.766 10 H 0.088 0.912 11 N -0.726 5.726 12 C 0.401 3.599 13 C -0.362 4.362 14 C -0.028 4.028 15 C -0.341 4.341 16 C 0.262 3.738 17 C -0.471 4.471 18 H 0.085 0.915 19 C 0.031 3.969 20 N -0.749 5.749 21 Si 0.980 3.020 22 H -0.267 1.267 23 H -0.270 1.270 24 H -0.256 1.256 25 N -0.560 5.560 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.035 4.035 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.212 0.788 37 H 0.388 0.612 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.274 0.726 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 2.937 12.640 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.044 3.956 3 C -0.205 4.205 4 N -0.134 5.134 5 N -0.142 5.142 6 C -0.139 4.139 7 C -0.246 4.246 8 C -0.070 4.070 9 C 0.126 3.874 10 H 0.106 0.894 11 N -0.361 5.361 12 C 0.161 3.839 13 C -0.388 4.388 14 C -0.052 4.052 15 C -0.364 4.364 16 C 0.135 3.865 17 C -0.503 4.503 18 H 0.103 0.897 19 C -0.191 4.191 20 N -0.371 5.371 21 Si 0.801 3.199 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.180 1.180 25 N -0.282 5.282 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.222 0.778 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.451 4.146 12.898 14.261 hybrid contribution 0.168 -0.867 -0.963 1.306 sum 4.619 3.280 11.936 13.212 Atomic orbital electron populations 1.21956 0.93107 1.01977 1.03214 1.21506 0.95885 0.94642 0.83541 1.22023 1.01207 0.93599 1.03715 1.48606 1.38270 1.20980 1.05511 1.77374 1.25153 1.25028 0.86638 1.24083 0.95983 0.92658 1.01135 1.20273 1.10115 1.03829 0.90399 1.21241 0.97637 0.90834 0.97293 1.19458 0.89606 0.95137 0.83177 0.89448 1.44371 1.07634 1.80990 1.03112 1.18795 0.89737 0.89593 0.85776 1.20941 0.94408 1.26211 0.97224 1.20992 0.98239 0.93389 0.92611 1.21693 0.94051 1.21342 0.99273 1.18612 0.91719 0.87276 0.88869 1.19904 0.91434 1.44593 0.94336 0.89736 1.26851 1.01893 0.93018 0.97329 1.70239 1.20245 1.29945 1.16662 0.85236 0.76758 0.78933 0.79010 1.19206 1.19424 1.17962 1.68157 1.33087 1.25373 1.01603 1.22001 1.00175 0.94983 0.98924 1.21577 0.97375 1.02677 0.93111 1.20073 0.96329 0.93075 0.97809 0.91190 0.90174 0.93903 0.88848 0.89566 0.91221 0.92633 0.77117 0.77813 0.86339 0.85381 0.88139 0.91538 0.92479 0.91354 0.91329 0.89212 0.88798 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.46 71.98 0.68 -3.69 16 2 C 0.15 4.51 3.26 44.99 0.15 4.66 16 3 C -0.15 -3.85 9.46 71.98 0.68 -3.17 16 4 N -0.35 -10.92 3.26 -314.27 -1.03 -11.95 16 5 N -0.32 -9.57 12.45 -57.28 -0.71 -10.29 16 6 C 0.05 1.11 12.00 85.06 1.02 2.13 16 7 C -0.23 -5.88 5.91 -20.14 -0.12 -6.00 16 8 C 0.06 1.78 6.27 41.64 0.26 2.04 16 9 C 0.23 7.26 2.19 44.41 0.10 7.35 16 10 H 0.09 2.76 6.44 -2.39 -0.02 2.75 16 11 N -0.73 -28.31 3.39 -327.25 -1.11 -29.41 16 12 C 0.40 18.67 7.64 133.42 1.02 19.69 16 13 C -0.36 -15.45 9.02 22.73 0.21 -15.24 16 14 C -0.03 -1.22 10.15 22.39 0.23 -0.99 16 15 C -0.34 -16.91 9.83 22.87 0.22 -16.68 16 16 C 0.26 14.55 6.54 40.18 0.26 14.81 16 17 C -0.47 -25.69 9.13 23.46 0.21 -25.47 16 18 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 19 C 0.03 1.59 5.49 85.28 0.47 2.05 16 20 N -0.75 -39.88 11.49 21.84 0.25 -39.63 16 21 Si 0.98 38.43 29.56 68.60 2.03 40.46 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 N -0.56 -30.42 7.92 -186.58 -1.48 -31.90 16 26 C -0.12 -3.24 5.45 30.75 0.17 -3.08 16 27 C -0.11 -2.10 5.90 30.76 0.18 -1.92 16 28 C -0.03 -0.64 6.28 30.02 0.19 -0.45 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.09 3.38 6.02 -2.38 -0.01 3.36 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.21 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.39 16.29 8.44 -92.71 -0.78 15.51 16 38 H 0.12 4.33 5.99 -2.91 -0.02 4.31 16 39 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 40 H 0.10 4.70 8.06 -2.92 -0.02 4.67 16 41 H 0.27 13.33 8.29 -92.71 -0.77 12.56 16 42 H 0.06 1.66 8.11 -2.38 -0.02 1.65 16 43 H 0.07 1.95 7.74 -2.39 -0.02 1.93 16 44 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 45 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -63.68 377.80 4.08 -59.60 By element: Atomic # 1 Polarization: 46.87 SS G_CDS: 0.20 Total: 47.07 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 5.93 Total: -23.97 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -4.07 Total: -123.17 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -63.68 4.08 -59.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324084779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.617 kcal (2) G-P(sol) polarization free energy of solvation -63.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds