Wall clock time and date at job start Tue Mar 31 2020 15:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46837 * 2 1 4 4 C 1.52997 * 109.46951 * 239.99936 * 2 1 3 5 5 C 1.52999 * 109.46881 * 120.00116 * 2 1 3 6 6 N 1.46499 * 109.47276 * 60.00064 * 5 2 1 7 7 C 1.46499 * 120.00136 * 269.99459 * 6 5 2 8 8 C 1.50697 * 109.47293 * 270.00491 * 7 6 5 9 9 H 1.07997 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00091 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00242 * 179.97438 * 10 8 7 12 12 Si 1.86807 * 119.99879 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46938 * 90.00404 * 12 10 8 14 14 H 1.48499 * 109.47143 * 210.00686 * 12 10 8 15 15 H 1.48496 * 109.47136 * 330.00589 * 12 10 8 16 16 C 1.38005 * 120.00125 * 89.99767 * 6 5 2 17 17 N 1.33107 * 120.03876 * 359.72157 * 16 6 5 18 18 C 1.32119 * 120.10011 * 179.76853 * 17 16 6 19 19 N 1.32166 * 120.18859 * 0.50771 * 18 17 16 20 20 C 1.33136 * 120.08002 * 359.74684 * 19 18 17 21 21 C 1.48266 * 120.05269 * 180.02562 * 20 19 18 22 22 C 1.39404 * 120.12767 * 179.70235 * 21 20 19 23 23 C 1.37997 * 119.87137 * 179.75333 * 22 21 20 24 24 C 1.38332 * 120.12511 * 0.54596 * 23 22 21 25 25 C 1.38324 * 120.25846 * 359.70982 * 24 23 22 26 26 C 1.38004 * 120.13025 * 0.02562 * 25 24 23 27 27 N 1.32855 * 120.04238 * 179.97438 * 16 6 5 28 28 H 1.09003 * 109.46617 * 299.99863 * 1 2 3 29 29 H 1.08999 * 109.46983 * 59.99846 * 1 2 3 30 30 H 1.09005 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.09013 * 109.46695 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47460 * 299.99862 * 3 2 1 33 33 H 1.09003 * 109.47405 * 60.00619 * 3 2 1 34 34 H 1.08996 * 109.47541 * 300.00192 * 4 2 1 35 35 H 1.09009 * 109.47183 * 60.00123 * 4 2 1 36 36 H 1.08996 * 109.47141 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47074 * 299.99639 * 5 2 1 38 38 H 1.09008 * 109.46412 * 179.97438 * 5 2 1 39 39 H 1.08997 * 109.46865 * 30.00228 * 7 6 5 40 40 H 1.08998 * 109.47058 * 149.99741 * 7 6 5 41 41 H 0.96997 * 120.00230 * 179.97438 * 11 10 8 42 42 H 1.08003 * 119.90199 * 180.25836 * 18 17 16 43 43 H 1.08006 * 120.06200 * 0.02562 * 22 21 20 44 44 H 1.08002 * 119.93510 * 180.30039 * 23 22 21 45 45 H 1.08004 * 119.87111 * 179.72448 * 24 23 22 46 46 H 1.08004 * 119.93821 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.06706 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.5517 -2.1025 1.2492 7 6 0.2716 -2.4269 1.8836 8 6 0.5025 -2.7749 3.3316 9 1 1.5027 -2.7566 3.7385 10 6 -0.5631 -3.1175 4.1366 11 7 -0.3616 -3.4217 5.4001 12 14 -2.2931 -3.1497 3.4326 13 1 -2.5838 -4.5034 2.8956 14 1 -3.2691 -2.8215 4.5026 15 1 -2.4016 -2.1500 2.3400 16 6 2.2975 -3.0981 0.6516 17 7 3.4580 -2.8033 0.0702 18 6 4.1752 -3.7562 -0.4983 19 7 3.7393 -5.0040 -0.5011 20 6 2.5772 -5.3062 0.0739 21 6 2.0892 -6.7062 0.0708 22 6 0.8755 -7.0255 0.6778 23 6 0.4239 -8.3294 0.6674 24 6 1.1783 -9.3207 0.0661 25 6 2.3859 -9.0108 -0.5332 26 6 2.8451 -7.7094 -0.5338 27 7 1.8556 -4.3510 0.6516 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2495 37 1 1.6767 -0.2074 2.1392 38 1 3.1301 -0.7216 1.2489 39 1 -0.3945 -1.5666 1.8185 40 1 -0.1817 -3.2768 1.3734 41 1 -1.1113 -3.6624 5.9666 42 1 5.1183 -3.5142 -0.9655 43 1 0.2878 -6.2530 1.1515 44 1 -0.5186 -8.5771 1.1332 45 1 0.8230 -10.3406 0.0642 46 1 2.9706 -9.7888 -1.0016 47 1 3.7879 -7.4685 -1.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332251219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:44 Heat of formation + Delta-G solvation = 98.161118 kcal Electronic energy + Delta-G solvation = -28282.791533 eV Core-core repulsion = 24659.225150 eV Total energy + Delta-G solvation = -3623.566383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09828 -38.89250 -38.16622 -35.12916 -33.79908 -32.88166 -31.84853 -30.72231 -30.45601 -28.43990 -27.07891 -26.93498 -25.94182 -24.78165 -23.69500 -22.25061 -21.75437 -20.68543 -18.80325 -17.82092 -17.51136 -17.05132 -16.29270 -15.41214 -15.27328 -14.88079 -14.51231 -14.40964 -14.25720 -14.12347 -13.70267 -13.53404 -13.34457 -13.20737 -13.09354 -12.74075 -12.47225 -12.27772 -11.97963 -11.87088 -11.61993 -11.43207 -11.23960 -11.20474 -10.91623 -10.88576 -10.72011 -10.58647 -10.45421 -10.38930 -10.32863 -10.04855 -9.53394 -9.11810 -8.87352 -8.78785 -8.64222 -8.54043 -7.43004 -6.14797 -4.13944 0.75545 1.57459 1.69807 2.08975 3.19516 3.23664 3.28913 3.32865 3.89988 4.04079 4.32004 4.34494 4.56501 4.81009 5.03771 5.05407 5.06492 5.14416 5.17919 5.21017 5.25327 5.46834 5.64219 5.70225 5.72443 5.76185 5.79694 5.95172 6.02019 6.03394 6.08240 6.15871 6.18803 6.20467 6.29512 6.36903 6.40137 6.49049 6.59563 6.62908 6.65145 6.70542 6.71451 6.86225 7.02457 7.08431 7.25369 7.51244 7.76027 7.98821 8.42299 8.87256 8.95910 9.44142 10.98495 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009027 B = 0.005510 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.010799 B = 5080.056001 C = 7368.736570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.124 4.124 5 C 0.139 3.861 6 N -0.535 5.535 7 C 0.221 3.779 8 C -0.527 4.527 9 H 0.073 0.927 10 C 0.076 3.924 11 N -0.895 5.895 12 Si 0.871 3.129 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.266 1.266 16 C 0.606 3.394 17 N -0.613 5.613 18 C 0.369 3.631 19 N -0.612 5.612 20 C 0.431 3.569 21 C -0.047 4.047 22 C -0.059 4.059 23 C -0.134 4.134 24 C -0.101 4.101 25 C -0.140 4.140 26 C -0.067 4.067 27 N -0.576 5.576 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.196 0.804 43 H 0.143 0.857 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -1.735 -13.715 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.182 4.182 5 C 0.015 3.985 6 N -0.245 5.245 7 C 0.101 3.899 8 C -0.566 4.566 9 H 0.091 0.909 10 C -0.126 4.126 11 N -0.533 5.533 12 Si 0.697 3.303 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.244 3.756 17 N -0.344 5.344 18 C 0.069 3.931 19 N -0.340 5.340 20 C 0.155 3.845 21 C -0.049 4.049 22 C -0.079 4.079 23 C -0.152 4.152 24 C -0.120 4.120 25 C -0.158 4.158 26 C -0.087 4.087 27 N -0.304 5.304 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.213 0.787 43 H 0.160 0.840 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.218 -1.488 -13.377 14.105 hybrid contribution -0.901 -0.052 -0.048 0.904 sum 3.316 -1.540 -13.426 13.915 Atomic orbital electron populations 1.22000 0.94720 1.02330 1.01091 1.20981 0.95965 0.95354 0.96300 1.21769 1.00938 0.95008 1.01553 1.21772 1.01486 0.99285 0.95642 1.21533 0.99770 0.80163 0.97006 1.46509 1.20975 1.04139 1.52898 1.19927 0.79330 0.96850 0.93810 1.21269 0.96098 1.46896 0.92300 0.90910 1.24796 0.98700 0.94500 0.94635 1.69888 1.31663 1.46155 1.05575 0.86942 0.84919 0.79269 0.79138 1.19772 1.21029 1.19038 1.19250 0.85273 0.85983 0.85132 1.68644 1.08492 1.38222 1.19000 1.24820 0.96759 0.83328 0.88157 1.68860 1.16671 1.22330 1.26147 1.21228 0.85492 0.92862 0.84869 1.18080 0.95952 0.88568 1.02272 1.21532 0.94478 0.97080 0.94813 1.21148 1.00546 0.92765 1.00744 1.21298 0.94698 0.99190 0.96824 1.21050 0.96922 0.96239 1.01554 1.21289 0.99296 0.91723 0.96381 1.68650 1.36948 1.00321 1.24501 0.92456 0.93409 0.92077 0.92549 0.92846 0.92562 0.93801 0.94080 0.91689 0.89847 0.90008 0.94219 0.94199 0.92512 0.78712 0.83960 0.85599 0.86083 0.85813 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.23 37.16 0.27 -1.88 16 2 C -0.08 -1.21 0.84 -154.51 -0.13 -1.34 16 3 C -0.13 -1.57 8.47 37.16 0.31 -1.26 16 4 C -0.12 -1.80 7.08 37.16 0.26 -1.53 16 5 C 0.14 2.38 4.60 -4.04 -0.02 2.36 16 6 N -0.54 -10.94 2.05 -177.26 -0.36 -11.30 16 7 C 0.22 5.11 3.15 -5.20 -0.02 5.09 16 8 C -0.53 -14.47 9.94 -34.44 -0.34 -14.81 16 9 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 10 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 11 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 12 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 16 C 0.61 12.41 6.59 -322.13 -2.12 10.29 16 17 N -0.61 -10.85 7.20 -15.38 -0.11 -10.96 16 18 C 0.37 5.75 12.40 -91.56 -1.13 4.61 16 19 N -0.61 -10.48 9.61 -12.52 -0.12 -10.60 16 20 C 0.43 8.22 7.59 -156.21 -1.19 7.04 16 21 C -0.05 -0.79 5.88 -104.91 -0.62 -1.41 16 22 C -0.06 -0.99 9.58 -39.24 -0.38 -1.37 16 23 C -0.13 -1.84 10.03 -39.64 -0.40 -2.24 16 24 C -0.10 -1.19 10.04 -39.52 -0.40 -1.58 16 25 C -0.14 -1.64 10.03 -39.64 -0.40 -2.04 16 26 C -0.07 -0.94 9.58 -39.23 -0.38 -1.31 16 27 N -0.58 -12.31 8.36 -11.90 -0.10 -12.41 16 28 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.05 5.99 -51.93 -0.31 0.74 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.75 6.13 -51.93 -0.32 0.43 16 35 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 37 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 38 H 0.08 1.38 7.37 -51.92 -0.38 0.99 16 39 H 0.04 0.89 5.11 -51.93 -0.27 0.62 16 40 H 0.04 0.96 6.79 -51.93 -0.35 0.61 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 43 H 0.14 2.70 7.55 -52.48 -0.40 2.30 16 44 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 47 H 0.14 1.78 7.55 -52.49 -0.40 1.38 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -31.17 377.41 -12.71 -43.89 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.05 Total: 5.14 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -6.76 Total: 0.65 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: 0.08 Total: -71.30 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.17 -12.71 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332251219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.047 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds