Wall clock time and date at job start Tue Mar 31 2020 14:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38077 * 119.83022 * 2 1 4 4 C 1.38213 * 119.82879 * 180.02562 * 3 2 1 5 5 C 1.38058 * 119.87272 * 0.08647 * 4 3 2 6 6 C 1.38692 * 120.37388 * 359.97031 * 5 4 3 7 7 C 1.37872 * 119.72453 * 359.85289 * 6 5 4 8 8 C 1.50725 * 121.65549 * 180.46999 * 7 6 5 9 9 C 1.52904 * 109.95008 * 343.05626 * 8 7 6 10 10 N 1.47149 * 108.50244 * 50.41794 * 9 8 7 11 11 C 1.38580 * 111.00150 * 165.29279 * 10 9 8 12 12 N 1.31217 * 126.47323 * 359.06979 * 11 10 9 13 13 N 1.28527 * 109.85848 * 179.97438 * 12 11 10 14 14 C 1.30292 * 110.05766 * 0.02562 * 13 12 11 15 15 C 1.50706 * 126.34831 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46953 * 90.02203 * 15 14 13 17 17 C 1.50706 * 109.46573 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 N 1.36457 * 126.47178 * 179.35821 * 11 10 9 26 26 C 1.46500 * 127.13933 * 0.02562 * 25 11 10 27 27 C 1.46634 * 110.26161 * 288.71841 * 10 9 8 28 28 H 1.08999 * 109.47438 * 89.99307 * 1 2 3 29 29 H 1.08999 * 109.47429 * 210.00137 * 1 2 3 30 30 H 1.09008 * 109.46880 * 329.99666 * 1 2 3 31 31 H 1.08005 * 120.08466 * 0.06468 * 3 2 1 32 32 H 1.08001 * 120.06891 * 180.10173 * 4 3 2 33 33 H 1.07999 * 119.81800 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.38568 * 103.19571 * 8 7 6 35 35 H 1.08998 * 109.39046 * 222.99793 * 8 7 6 36 36 H 1.08996 * 109.64689 * 290.70652 * 9 8 7 37 37 H 1.09002 * 109.62484 * 170.11428 * 9 8 7 38 38 H 1.09000 * 109.46974 * 330.01952 * 15 14 13 39 39 H 1.09001 * 109.46547 * 210.02042 * 15 14 13 40 40 H 1.09000 * 109.47486 * 60.00062 * 16 15 14 41 41 H 1.09001 * 109.47362 * 299.99339 * 16 15 14 42 42 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47000 * 270.18051 * 26 25 11 44 44 H 1.08997 * 109.47282 * 30.18643 * 26 25 11 45 45 H 1.09002 * 109.46767 * 150.18113 * 26 25 11 46 46 H 1.08996 * 109.27451 * 172.78553 * 27 10 9 47 47 H 1.08990 * 109.27183 * 292.30796 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.1978 0.0000 4 6 3.5759 1.1978 -0.0005 5 6 4.2635 0.0006 -0.0029 6 6 3.5752 -1.2034 -0.0041 7 6 2.1965 -1.2027 0.0002 8 6 1.4048 -2.4853 0.0096 9 6 2.2995 -3.6537 -0.4057 10 7 3.5283 -3.6112 0.4028 11 6 4.2227 -4.8072 0.3141 12 7 3.8642 -5.8685 -0.3692 13 7 4.7426 -6.7960 -0.2279 14 6 5.7054 -6.3852 0.5479 15 6 6.9209 -7.1759 0.9584 16 6 8.0457 -6.9435 -0.0524 17 6 9.2614 -7.7338 0.3585 18 1 9.2358 -8.3375 1.2536 19 6 10.4079 -7.6820 -0.4056 20 7 10.4408 -6.9425 -1.4927 21 14 11.9144 -8.6622 0.1033 22 1 11.6215 -9.4063 1.3545 23 1 12.2672 -9.6224 -0.9732 24 1 13.0527 -7.7365 0.3334 25 7 5.4058 -5.1054 0.9252 26 6 6.1930 -4.2343 1.8013 27 6 4.3693 -2.4834 -0.0104 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6524 2.1324 0.0011 32 1 4.1171 2.1324 0.0011 33 1 5.3435 0.0016 -0.0037 34 1 1.0182 -2.6644 1.0128 35 1 0.5727 -2.4021 -0.6895 36 1 2.5529 -3.5638 -1.4620 37 1 1.7779 -4.5945 -0.2300 38 1 6.6716 -8.2367 0.9871 39 1 7.2479 -6.8526 1.9466 40 1 8.2951 -5.8828 -0.0811 41 1 7.7188 -7.2668 -1.0407 42 1 11.2475 -6.9058 -2.0300 43 1 6.8979 -3.6578 1.2022 44 1 5.5264 -3.5547 2.3322 45 1 6.7406 -4.8424 2.5214 46 1 5.2088 -2.3893 0.6783 47 1 4.7477 -2.6663 -1.0160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338400248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:23 Heat of formation + Delta-G solvation = 100.266984 kcal Electronic energy + Delta-G solvation = -27258.299490 eV Core-core repulsion = 23634.824424 eV Total energy + Delta-G solvation = -3623.475066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.64746 -40.49939 -37.66168 -34.94020 -34.17755 -33.80690 -32.56223 -31.40361 -30.31912 -28.50391 -27.46583 -27.03037 -25.61799 -24.77382 -24.00308 -21.82695 -21.46005 -20.85928 -20.01748 -19.58424 -17.31132 -16.66308 -16.55653 -16.25073 -15.77466 -15.56432 -15.23097 -14.79427 -14.61628 -14.49986 -14.08519 -13.57402 -13.50194 -13.26916 -13.15840 -13.05501 -12.76569 -12.71763 -12.53626 -12.33486 -12.09164 -12.06032 -11.64537 -11.36620 -11.15048 -11.04789 -11.02042 -10.85277 -10.67513 -10.34112 -10.09212 -9.90573 -9.80666 -9.41096 -9.21661 -8.82674 -8.77894 -8.43413 -7.93310 -6.07499 -4.11548 1.07109 1.11713 2.07954 2.51309 3.22721 3.27328 3.35465 3.39054 3.43376 3.68199 4.28266 4.39619 4.40415 4.57412 4.69620 4.75975 4.81488 4.97528 5.01059 5.05254 5.06223 5.16036 5.21066 5.22683 5.28563 5.28776 5.33802 5.34882 5.44297 5.48048 5.53872 5.58424 5.72631 5.78888 5.84955 5.93117 6.09741 6.23141 6.29794 6.34084 6.39293 6.44535 6.61581 6.67016 6.74515 6.91896 7.39182 7.53670 7.67303 7.90172 8.27658 8.94914 9.19216 9.53263 11.03678 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.002546 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.264083 B =10993.593796 C =11836.780763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.073 4.073 7 C -0.067 4.067 8 C -0.077 4.077 9 C 0.069 3.931 10 N -0.442 5.442 11 C 0.332 3.668 12 N -0.321 5.321 13 N -0.294 5.294 14 C 0.214 3.786 15 C -0.031 4.031 16 C 0.032 3.968 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 N -0.482 5.482 26 C 0.076 3.924 27 C 0.089 3.911 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.025 0.975 42 H 0.261 0.739 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 18.014 5.744 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.073 4.073 7 C -0.068 4.068 8 C -0.114 4.114 9 C -0.058 4.058 10 N -0.165 5.165 11 C -0.024 4.024 12 N -0.166 5.166 13 N -0.133 5.133 14 C -0.054 4.054 15 C -0.071 4.071 16 C -0.006 4.006 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 N -0.177 5.177 26 C -0.068 4.068 27 C -0.038 4.038 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.454 17.246 5.214 25.790 hybrid contribution 2.044 0.525 0.312 2.134 sum -16.409 17.771 5.526 24.811 Atomic orbital electron populations 1.20839 0.91169 1.02938 1.02391 1.19837 0.96057 0.92452 1.00291 1.20977 0.94311 0.97349 1.01218 1.21016 0.94317 0.97781 1.00462 1.20997 0.99978 0.91665 1.00978 1.19382 0.93109 0.93829 1.00980 1.19420 0.92688 0.94635 1.00028 1.20651 0.97219 0.90541 1.02991 1.22131 0.88410 1.00112 0.95188 1.58945 1.05619 0.98165 1.53812 1.22422 0.87371 0.95105 0.97526 1.74496 1.23579 0.98397 1.20109 1.73994 1.00463 1.22070 1.16728 1.25558 0.99522 0.82808 0.97501 1.20446 0.88223 0.97726 1.00656 1.19071 0.90627 0.97148 0.93800 1.21182 0.96800 1.28271 1.09876 0.92211 1.25019 0.98930 0.95473 0.94893 1.69981 1.28382 1.39607 1.15165 0.86500 0.82689 0.79937 0.78670 1.19603 1.20900 1.21048 1.46062 1.18644 1.14039 1.38991 1.22104 0.95887 0.94638 0.94132 1.21181 0.94925 0.86903 1.00829 0.91072 0.91150 0.91592 0.86114 0.85926 0.85903 0.89497 0.89471 0.92623 0.88161 0.89243 0.91222 0.96832 0.95629 0.92920 0.90192 0.89419 0.88586 0.88767 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.21 36.00 0.33 -0.40 16 2 C -0.09 -0.76 5.88 -104.54 -0.62 -1.38 16 3 C -0.12 -1.01 9.69 -39.65 -0.38 -1.39 16 4 C -0.12 -1.01 10.05 -39.66 -0.40 -1.41 16 5 C -0.12 -1.13 9.65 -39.48 -0.38 -1.51 16 6 C -0.07 -0.79 5.79 -104.62 -0.61 -1.39 16 7 C -0.07 -0.68 5.77 -104.60 -0.60 -1.29 16 8 C -0.08 -0.71 4.71 -27.92 -0.13 -0.84 16 9 C 0.07 0.82 5.12 -3.74 -0.02 0.80 16 10 N -0.44 -5.99 4.73 -176.00 -0.83 -6.83 16 11 C 0.33 5.66 7.18 -318.87 -2.29 3.37 16 12 N -0.32 -6.43 11.06 30.31 0.34 -6.10 16 13 N -0.29 -6.45 12.18 32.99 0.40 -6.05 16 14 C 0.21 4.27 7.32 -154.01 -1.13 3.15 16 15 C -0.03 -0.62 5.53 -27.88 -0.15 -0.78 16 16 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 17 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 N -0.48 -8.14 3.21 -121.46 -0.39 -8.53 16 26 C 0.08 0.94 9.37 59.85 0.56 1.50 16 27 C 0.09 1.07 4.97 -5.16 -0.03 1.04 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.41 6.78 -51.93 -0.35 0.05 16 30 H 0.07 0.35 8.08 -51.92 -0.42 -0.07 16 31 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.09 0.64 7.31 -51.93 -0.38 0.26 16 36 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.10 1.27 7.57 -51.93 -0.39 0.88 16 38 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.07 1.25 7.26 -51.93 -0.38 0.87 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.08 0.95 7.92 -51.93 -0.41 0.53 16 44 H 0.09 0.89 7.54 -51.93 -0.39 0.50 16 45 H 0.10 1.11 7.25 -51.93 -0.38 0.73 16 46 H 0.09 1.03 5.56 -51.93 -0.29 0.75 16 47 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -33.46 377.41 -12.62 -46.09 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.15 Total: -1.83 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -6.39 Total: -12.84 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.25 Total: -53.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.46 -12.62 -46.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338400248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.353 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds