Wall clock time and date at job start Tue Mar 31 2020 14:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38077 * 119.83022 * 2 1 4 4 C 1.38213 * 119.82879 * 180.02562 * 3 2 1 5 5 C 1.38058 * 119.87272 * 0.08647 * 4 3 2 6 6 C 1.38692 * 120.37388 * 359.97031 * 5 4 3 7 7 C 1.37872 * 119.72453 * 359.85289 * 6 5 4 8 8 C 1.50725 * 121.65549 * 180.46999 * 7 6 5 9 9 C 1.52904 * 109.95008 * 343.05626 * 8 7 6 10 10 N 1.47149 * 108.50244 * 50.41794 * 9 8 7 11 11 C 1.38580 * 111.00150 * 165.29279 * 10 9 8 12 12 N 1.31217 * 126.47323 * 359.06979 * 11 10 9 13 13 N 1.28527 * 109.85848 * 179.97438 * 12 11 10 14 14 C 1.30292 * 110.05766 * 0.02562 * 13 12 11 15 15 C 1.50706 * 126.34831 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46953 * 90.02203 * 15 14 13 17 17 C 1.50706 * 109.46573 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 N 1.36457 * 126.47178 * 179.35821 * 11 10 9 26 26 C 1.46500 * 127.13933 * 0.02562 * 25 11 10 27 27 C 1.46634 * 110.26161 * 288.71841 * 10 9 8 28 28 H 1.08999 * 109.47438 * 89.99307 * 1 2 3 29 29 H 1.08999 * 109.47429 * 210.00137 * 1 2 3 30 30 H 1.09008 * 109.46880 * 329.99666 * 1 2 3 31 31 H 1.08005 * 120.08466 * 0.06468 * 3 2 1 32 32 H 1.08001 * 120.06891 * 180.10173 * 4 3 2 33 33 H 1.07999 * 119.81800 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.38568 * 103.19571 * 8 7 6 35 35 H 1.08998 * 109.39046 * 222.99793 * 8 7 6 36 36 H 1.08996 * 109.64689 * 290.70652 * 9 8 7 37 37 H 1.09002 * 109.62484 * 170.11428 * 9 8 7 38 38 H 1.09000 * 109.46974 * 330.01952 * 15 14 13 39 39 H 1.09001 * 109.46547 * 210.02042 * 15 14 13 40 40 H 1.09000 * 109.47486 * 60.00062 * 16 15 14 41 41 H 1.09001 * 109.47362 * 299.99339 * 16 15 14 42 42 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47000 * 270.18051 * 26 25 11 44 44 H 1.08997 * 109.47282 * 30.18643 * 26 25 11 45 45 H 1.09002 * 109.46767 * 150.18113 * 26 25 11 46 46 H 1.08996 * 109.27451 * 172.78553 * 27 10 9 47 47 H 1.08990 * 109.27183 * 292.30796 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.1978 0.0000 4 6 3.5759 1.1978 -0.0005 5 6 4.2635 0.0006 -0.0029 6 6 3.5752 -1.2034 -0.0041 7 6 2.1965 -1.2027 0.0002 8 6 1.4048 -2.4853 0.0096 9 6 2.2995 -3.6537 -0.4057 10 7 3.5283 -3.6112 0.4028 11 6 4.2227 -4.8072 0.3141 12 7 3.8642 -5.8685 -0.3692 13 7 4.7426 -6.7960 -0.2279 14 6 5.7054 -6.3852 0.5479 15 6 6.9209 -7.1759 0.9584 16 6 8.0457 -6.9435 -0.0524 17 6 9.2614 -7.7338 0.3585 18 1 9.2358 -8.3375 1.2536 19 6 10.4079 -7.6820 -0.4056 20 7 10.4408 -6.9425 -1.4927 21 14 11.9144 -8.6622 0.1033 22 1 11.6215 -9.4063 1.3545 23 1 12.2672 -9.6224 -0.9732 24 1 13.0527 -7.7365 0.3334 25 7 5.4058 -5.1054 0.9252 26 6 6.1930 -4.2343 1.8013 27 6 4.3693 -2.4834 -0.0104 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6524 2.1324 0.0011 32 1 4.1171 2.1324 0.0011 33 1 5.3435 0.0016 -0.0037 34 1 1.0182 -2.6644 1.0128 35 1 0.5727 -2.4021 -0.6895 36 1 2.5529 -3.5638 -1.4620 37 1 1.7779 -4.5945 -0.2300 38 1 6.6716 -8.2367 0.9871 39 1 7.2479 -6.8526 1.9466 40 1 8.2951 -5.8828 -0.0811 41 1 7.7188 -7.2668 -1.0407 42 1 11.2475 -6.9058 -2.0300 43 1 6.8979 -3.6578 1.2022 44 1 5.5264 -3.5547 2.3322 45 1 6.7406 -4.8424 2.5214 46 1 5.2088 -2.3893 0.6783 47 1 4.7477 -2.6663 -1.0160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338400248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:19 Heat of formation + Delta-G solvation = 83.977916 kcal Electronic energy + Delta-G solvation = -27259.005837 eV Core-core repulsion = 23634.824424 eV Total energy + Delta-G solvation = -3624.181413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -44.07560 -41.30475 -38.62281 -36.43878 -35.72110 -34.71810 -33.93733 -32.85066 -31.11726 -30.06484 -28.65085 -27.62643 -27.27850 -25.96621 -24.95312 -23.64947 -22.51166 -21.69743 -21.47223 -20.58357 -18.69478 -18.31975 -17.65256 -17.44594 -16.86861 -16.67587 -16.40582 -16.18231 -15.73261 -15.35039 -15.13523 -14.92088 -14.75175 -14.37140 -14.27084 -14.20291 -13.92529 -13.68582 -13.43752 -13.32209 -13.19296 -12.93577 -12.87825 -12.77802 -12.64974 -12.43361 -12.36862 -12.05896 -11.86589 -11.79617 -11.64635 -11.50504 -11.30400 -11.17733 -10.81425 -10.58450 -9.60613 -9.45513 -9.29835 -8.20981 -6.33073 0.36388 0.43598 0.69379 1.22205 1.42499 1.44169 1.56837 1.72875 2.41650 2.49589 2.75975 3.13641 3.37881 3.51135 3.60718 3.75414 3.84408 3.94523 4.01146 4.06849 4.10947 4.20251 4.21104 4.22603 4.35449 4.43929 4.48963 4.55381 4.63525 4.66893 4.72783 4.74240 4.85606 4.87217 4.90236 4.95794 4.98727 4.99713 5.18233 5.33738 5.36807 5.44352 5.50367 5.58436 5.59926 5.63091 5.70758 5.78242 6.05803 6.12573 6.16751 6.83293 7.37120 7.69972 8.91367 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.002546 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.264083 B =10993.593796 C =11836.780763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.121 4.121 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.083 4.083 8 C -0.066 4.066 9 C 0.067 3.933 10 N -0.434 5.434 11 C 0.347 3.653 12 N -0.354 5.354 13 N -0.331 5.331 14 C 0.199 3.801 15 C -0.014 4.014 16 C 0.043 3.957 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.256 1.256 23 H -0.284 1.284 24 H -0.278 1.278 25 N -0.480 5.480 26 C 0.066 3.934 27 C 0.093 3.907 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.099 0.901 40 H -0.005 1.005 41 H -0.019 1.019 42 H 0.263 0.737 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 19.783 7.656 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.147 4.147 6 C -0.093 4.093 7 C -0.083 4.083 8 C -0.103 4.103 9 C -0.060 4.060 10 N -0.158 5.158 11 C -0.011 4.011 12 N -0.199 5.199 13 N -0.169 5.169 14 C -0.070 4.070 15 C -0.054 4.054 16 C 0.005 3.995 17 C -0.574 4.574 18 H 0.092 0.908 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.179 1.179 23 H -0.210 1.210 24 H -0.204 1.204 25 N -0.174 5.174 26 C -0.075 4.075 27 C -0.034 4.034 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.014 0.986 41 H 0.000 1.000 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.948 19.033 7.150 27.793 hybrid contribution 2.113 0.118 -0.309 2.139 sum -16.835 19.152 6.841 26.401 Atomic orbital electron populations 1.20896 0.89333 1.03890 1.03176 1.20137 0.97475 0.92024 0.99468 1.21341 0.94443 0.98218 1.00082 1.21325 0.94786 0.98172 0.99604 1.21171 1.00609 0.91720 1.01169 1.19369 0.93604 0.93360 1.02922 1.19585 0.92567 0.95507 1.00683 1.20626 0.96914 0.88884 1.03895 1.22212 0.88135 1.01192 0.94436 1.59129 1.05841 0.97063 1.53765 1.22804 0.86983 0.95525 0.95754 1.74395 1.24223 0.99336 1.21928 1.73883 1.01594 1.23699 1.17755 1.25336 0.99338 0.84212 0.98100 1.20164 0.86762 0.98054 1.00421 1.18837 0.92080 0.95583 0.93026 1.21629 0.97345 1.28245 1.10223 0.90841 1.25999 1.02501 0.96525 0.94778 1.70128 1.29437 1.41412 1.16587 0.85349 0.78429 0.78306 0.78664 1.17919 1.21003 1.20363 1.46220 1.18711 1.13448 1.39024 1.22467 0.96342 0.94711 0.93946 1.21174 0.95351 0.86969 0.99876 0.90257 0.90674 0.90254 0.83776 0.83820 0.85116 0.88750 0.87334 0.93832 0.89111 0.89295 0.88281 0.98625 1.00029 0.92824 0.89672 0.86792 0.87281 0.87795 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.21 71.23 0.66 -0.47 16 2 C -0.09 -1.39 5.88 -19.81 -0.12 -1.50 16 3 C -0.12 -1.71 9.69 22.23 0.22 -1.50 16 4 C -0.12 -1.80 10.05 22.22 0.22 -1.57 16 5 C -0.13 -2.30 9.65 22.34 0.22 -2.09 16 6 C -0.09 -1.93 5.79 -19.87 -0.12 -2.04 16 7 C -0.08 -1.57 5.77 -19.85 -0.11 -1.68 16 8 C -0.07 -1.13 4.71 29.82 0.14 -0.99 16 9 C 0.07 1.62 5.12 86.22 0.44 2.06 16 10 N -0.43 -11.76 4.73 -710.75 -3.36 -15.12 16 11 C 0.35 12.02 7.18 260.11 1.87 13.89 16 12 N -0.35 -14.74 11.06 -58.00 -0.64 -15.38 16 13 N -0.33 -15.10 12.18 -49.53 -0.60 -15.70 16 14 C 0.20 8.15 7.32 137.64 1.01 9.16 16 15 C -0.01 -0.59 5.53 29.85 0.17 -0.42 16 16 C 0.04 2.24 4.96 29.85 0.15 2.39 16 17 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 18 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 20 N -0.94 -56.62 13.29 21.45 0.28 -56.34 16 21 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 N -0.48 -16.21 3.21 -538.17 -1.73 -17.94 16 26 C 0.07 1.56 9.37 127.77 1.20 2.76 16 27 C 0.09 2.24 4.97 85.58 0.43 2.66 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.66 6.78 -2.39 -0.02 0.64 16 30 H 0.08 0.56 8.08 -2.38 -0.02 0.54 16 31 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 35 H 0.11 1.39 7.31 -2.39 -0.02 1.37 16 36 H 0.04 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.09 2.36 7.57 -2.39 -0.02 2.34 16 38 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.10 3.43 7.26 -2.39 -0.02 3.41 16 40 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 41 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 42 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 44 H 0.11 2.07 7.54 -2.39 -0.02 2.05 16 45 H 0.11 2.30 7.25 -2.39 -0.02 2.28 16 46 H 0.10 2.22 5.56 -2.39 -0.01 2.21 16 47 H 0.04 1.16 8.11 -2.39 -0.02 1.14 16 Total: -1.00 -74.52 377.41 4.00 -70.52 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.97 Total: 12.72 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 7.05 Total: -7.94 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.05 Total: -120.47 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.52 4.00 -70.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338400248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.498 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds