Wall clock time and date at job start Tue Mar 31 2020 15:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 N 1.46505 * 109.46858 * 119.99917 * 2 1 3 5 5 C 1.36036 * 126.35096 * 120.01590 * 4 2 1 6 6 C 1.50700 * 124.94846 * 359.97438 * 5 4 2 7 7 N 1.46900 * 109.47552 * 89.99946 * 6 5 4 8 8 C 1.46894 * 111.00096 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46924 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47580 * 54.99767 * 9 8 7 11 11 C 1.47205 * 109.46965 * 294.99215 * 9 8 7 12 12 N 5.35878 * 149.40923 * 279.52113 * 2 1 3 13 13 C 1.53001 * 109.47269 * 174.99845 * 9 8 7 14 14 C 1.50701 * 109.47219 * 184.99487 * 13 9 8 15 15 H 1.07997 * 120.00157 * 359.97438 * 14 13 9 16 16 C 1.37879 * 120.00053 * 179.97438 * 14 13 9 17 17 N 1.31515 * 120.00202 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99805 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47035 * 90.00101 * 18 16 14 20 20 H 1.48498 * 109.47030 * 209.99913 * 18 16 14 21 21 H 1.48498 * 109.47258 * 329.99838 * 18 16 14 22 22 N 1.30106 * 110.10195 * 179.97438 * 5 4 2 23 23 C 1.35787 * 109.64359 * 359.97438 * 22 5 4 24 24 C 1.39734 * 133.60143 * 179.97438 * 23 22 5 25 25 C 1.36605 * 119.88806 * 180.02562 * 24 23 22 26 26 C 1.38776 * 120.66622 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.45485 * 0.03810 * 26 25 24 28 28 C 1.38058 * 126.34584 * 299.97134 * 4 2 1 29 29 H 1.09004 * 109.47205 * 300.00722 * 1 2 3 30 30 H 1.09005 * 109.46787 * 59.99723 * 1 2 3 31 31 H 1.08992 * 109.47661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47075 * 239.99511 * 2 1 3 33 33 H 1.09001 * 109.47013 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47111 * 299.99443 * 3 2 1 35 35 H 1.08996 * 109.47397 * 59.99708 * 3 2 1 36 36 H 1.09004 * 109.46991 * 210.00395 * 6 5 4 37 37 H 1.09004 * 109.47138 * 329.99711 * 6 5 4 38 38 H 1.00895 * 110.99604 * 303.95554 * 7 6 5 39 39 H 1.08999 * 109.46967 * 299.99602 * 8 7 6 40 40 H 1.09001 * 109.47370 * 59.99835 * 8 7 6 41 41 H 1.08997 * 109.46930 * 304.99402 * 13 9 8 42 42 H 1.09001 * 109.47176 * 64.99374 * 13 9 8 43 43 H 0.96997 * 119.99647 * 179.97438 * 17 16 14 44 44 H 1.08009 * 120.05649 * 0.29744 * 24 23 22 45 45 H 1.08001 * 119.66343 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.77372 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.15787 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8037 -1.8010 1.2221 6 6 3.3155 -2.5250 0.0035 7 7 4.6124 -1.9604 -0.3930 8 6 5.1427 -2.6429 -1.5807 9 6 6.4914 -2.0292 -1.9619 10 1 7.1626 -2.0654 -1.1039 11 6 6.2949 -0.6292 -2.3725 12 7 6.1429 0.4511 -2.6895 13 6 7.1021 -2.8195 -3.1209 14 6 8.4830 -2.2928 -3.4156 15 1 8.8847 -1.4758 -2.8347 16 6 9.2336 -2.8540 -4.4269 17 7 10.4389 -2.3948 -4.6838 18 14 8.5385 -4.2668 -5.4322 19 1 7.8117 -3.7263 -6.6090 20 1 9.6482 -5.1390 -5.8936 21 1 7.6030 -5.0581 -4.5932 22 7 3.0488 -2.1468 2.4522 23 6 2.4370 -1.2807 3.3004 24 6 2.3676 -1.1823 4.6925 25 6 1.6526 -0.1709 5.2686 26 6 0.9919 0.7645 4.4848 27 6 1.0462 0.6870 3.1095 28 6 1.7672 -0.3347 2.5063 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.4350 -3.5838 0.2334 37 1 2.6036 -2.4088 -0.8138 38 1 4.5414 -0.9662 -0.5491 39 1 5.2750 -3.7025 -1.3622 40 1 4.4434 -2.5272 -2.4088 41 1 7.1655 -3.8730 -2.8486 42 1 6.4750 -2.7100 -4.0057 43 1 10.9670 -2.7899 -5.3950 44 1 2.8821 -1.9021 5.3120 45 1 1.6011 -0.0985 6.3449 46 1 0.4311 1.5584 4.9554 47 1 0.5305 1.4177 2.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338487881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:29 Heat of formation + Delta-G solvation = 90.305419 kcal Electronic energy + Delta-G solvation = -26887.781832 eV Core-core repulsion = 23263.874800 eV Total energy + Delta-G solvation = -3623.907032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45184 -38.06382 -37.42801 -36.30218 -35.34539 -33.68750 -31.99399 -31.77154 -30.09738 -29.83374 -27.77701 -27.66989 -25.52320 -23.43495 -22.81147 -22.18041 -21.68114 -21.38572 -20.14104 -17.60447 -17.17497 -16.98548 -16.82465 -16.11215 -15.96440 -15.35242 -14.99760 -14.80960 -14.59496 -14.13091 -13.91672 -13.89156 -13.67086 -13.43246 -13.06798 -12.91432 -12.75777 -12.67964 -12.51113 -12.39158 -12.18526 -12.04825 -11.93019 -11.72790 -11.63539 -11.50580 -11.34230 -11.25744 -10.92859 -10.52265 -10.36050 -10.05164 -9.99941 -9.84645 -9.36766 -8.67085 -8.63728 -8.45280 -8.24557 -6.12846 -4.13931 0.75874 1.35465 2.29734 2.56161 3.24525 3.31922 3.33014 3.43290 3.48607 3.69566 3.85924 4.06928 4.11919 4.27194 4.35750 4.44487 4.52379 4.61351 4.74321 4.79428 4.86628 5.02861 5.05038 5.11334 5.21430 5.22701 5.23166 5.26667 5.29207 5.40591 5.44426 5.46321 5.58297 5.64167 5.72283 5.91623 5.94229 6.05936 6.26382 6.28875 6.32486 6.38123 6.69917 6.72401 6.90367 6.96521 7.06400 7.11827 7.60247 7.79925 8.25451 8.39239 8.90619 9.46529 11.00248 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.002508 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.628673 B =11161.619693 C =11535.596758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 C -0.167 4.167 4 N -0.482 5.482 5 C 0.290 3.710 6 C 0.136 3.864 7 N -0.680 5.680 8 C 0.066 3.934 9 C 0.016 3.984 10 H 0.119 0.881 11 C 0.237 3.763 12 N -0.467 5.467 13 C -0.003 4.003 14 C -0.529 4.529 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.262 1.262 22 N -0.473 5.473 23 C 0.045 3.955 24 C -0.062 4.062 25 C -0.133 4.133 26 C -0.106 4.106 27 C -0.112 4.112 28 C 0.055 3.945 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.339 0.661 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.019 0.981 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.367 2.570 14.689 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.028 3.972 3 C -0.225 4.225 4 N -0.173 5.173 5 C 0.024 3.976 6 C 0.005 3.995 7 N -0.312 5.312 8 C -0.064 4.064 9 C -0.005 4.005 10 H 0.137 0.863 11 C -0.080 4.080 12 N -0.144 5.144 13 C -0.042 4.042 14 C -0.567 4.567 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.186 1.186 22 N -0.192 5.192 23 C -0.074 4.074 24 C -0.081 4.081 25 C -0.153 4.153 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.055 4.055 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.635 3.158 14.673 27.997 hybrid contribution -1.044 0.055 -1.564 1.881 sum -24.679 3.213 13.109 28.128 Atomic orbital electron populations 1.22203 0.93298 1.03258 1.03480 1.21438 0.95539 0.94294 0.85951 1.22218 1.02671 0.94184 1.03403 1.45563 1.42315 1.24342 1.05067 1.23433 0.92217 0.86703 0.95271 1.20409 0.90119 0.99564 0.89393 1.60475 1.24506 1.08296 1.37968 1.22168 0.94768 0.99873 0.89551 1.19088 0.96558 0.82926 1.01974 0.86325 1.29197 0.91935 0.94802 0.92061 1.81055 1.10160 1.12986 1.10218 1.19634 0.96951 0.95880 0.91751 1.21018 0.97973 1.19367 1.18324 0.90787 1.24999 0.94642 0.96742 0.96751 1.69905 1.10224 1.41938 1.31351 0.86810 0.79039 0.82785 0.80858 1.20359 1.21221 1.18623 1.70444 1.23150 1.27184 0.98433 1.19117 0.99841 0.94244 0.94185 1.20038 0.98654 0.98495 0.90929 1.20611 0.99288 0.95494 0.99935 1.20863 0.99983 0.99305 0.92452 1.20000 1.01224 0.97341 0.94692 1.18804 1.02968 0.99660 0.84023 0.91488 0.90308 0.91721 0.88176 0.91388 0.90269 0.91497 0.86826 0.93221 0.84276 0.88314 0.94332 0.94110 0.96261 0.92531 0.85404 0.85533 0.85553 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.25 37.15 0.34 -0.72 16 2 C 0.13 1.07 3.51 -67.93 -0.24 0.84 16 3 C -0.17 -1.36 9.25 37.16 0.34 -1.02 16 4 N -0.48 -5.27 2.65 -104.11 -0.28 -5.54 16 5 C 0.29 3.61 7.37 -154.83 -1.14 2.46 16 6 C 0.14 1.42 5.81 -4.98 -0.03 1.39 16 7 N -0.68 -8.40 6.49 -115.06 -0.75 -9.14 16 8 C 0.07 0.83 5.12 -3.83 -0.02 0.81 16 9 C 0.02 0.28 2.42 -93.41 -0.23 0.05 16 10 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 11 C 0.24 4.54 12.98 -20.75 -0.27 4.27 16 12 N -0.47 -9.76 18.54 42.16 0.78 -8.97 16 13 C 0.00 -0.06 3.49 -27.88 -0.10 -0.16 16 14 C -0.53 -14.05 9.15 -34.44 -0.32 -14.36 16 15 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 18 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 22 N -0.47 -6.94 11.27 -8.24 -0.09 -7.04 16 23 C 0.04 0.61 7.23 -84.70 -0.61 -0.01 16 24 C -0.06 -0.69 10.05 -39.61 -0.40 -1.09 16 25 C -0.13 -1.17 9.96 -39.97 -0.40 -1.57 16 26 C -0.11 -0.89 10.03 -39.52 -0.40 -1.29 16 27 C -0.11 -1.06 8.77 -39.50 -0.35 -1.41 16 28 C 0.05 0.64 6.21 -83.98 -0.52 0.12 16 29 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.77 6.62 -51.93 -0.34 0.43 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.53 6.33 -51.93 -0.33 0.20 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.42 7.03 -51.93 -0.37 0.05 16 38 H 0.34 4.41 7.80 -39.29 -0.31 4.10 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 42 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.90 6.04 -52.49 -0.32 0.58 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -33.17 387.58 -9.79 -42.96 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.99 Total: 2.16 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -4.42 Total: -9.79 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.44 Total: -56.82 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.17 -9.79 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338487881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.267 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds