Wall clock time and date at job start Tue Mar 31 2020 15:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47418 * 2 1 4 4 N 1.46505 * 109.46858 * 119.99917 * 2 1 3 5 5 C 1.36036 * 126.35096 * 120.01590 * 4 2 1 6 6 C 1.50700 * 124.94846 * 359.97438 * 5 4 2 7 7 N 1.46900 * 109.47552 * 89.99946 * 6 5 4 8 8 C 1.46894 * 111.00096 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.46924 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47580 * 54.99767 * 9 8 7 11 11 C 1.47205 * 109.46965 * 294.99215 * 9 8 7 12 12 N 5.35878 * 149.40923 * 279.52113 * 2 1 3 13 13 C 1.53001 * 109.47269 * 174.99845 * 9 8 7 14 14 C 1.50701 * 109.47219 * 184.99487 * 13 9 8 15 15 H 1.07997 * 120.00157 * 359.97438 * 14 13 9 16 16 C 1.37879 * 120.00053 * 179.97438 * 14 13 9 17 17 N 1.31515 * 120.00202 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99805 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47035 * 90.00101 * 18 16 14 20 20 H 1.48498 * 109.47030 * 209.99913 * 18 16 14 21 21 H 1.48498 * 109.47258 * 329.99838 * 18 16 14 22 22 N 1.30106 * 110.10195 * 179.97438 * 5 4 2 23 23 C 1.35787 * 109.64359 * 359.97438 * 22 5 4 24 24 C 1.39734 * 133.60143 * 179.97438 * 23 22 5 25 25 C 1.36605 * 119.88806 * 180.02562 * 24 23 22 26 26 C 1.38776 * 120.66622 * 359.97438 * 25 24 23 27 27 C 1.37851 * 120.45485 * 0.03810 * 26 25 24 28 28 C 1.38058 * 126.34584 * 299.97134 * 4 2 1 29 29 H 1.09004 * 109.47205 * 300.00722 * 1 2 3 30 30 H 1.09005 * 109.46787 * 59.99723 * 1 2 3 31 31 H 1.08992 * 109.47661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47075 * 239.99511 * 2 1 3 33 33 H 1.09001 * 109.47013 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47111 * 299.99443 * 3 2 1 35 35 H 1.08996 * 109.47397 * 59.99708 * 3 2 1 36 36 H 1.09004 * 109.46991 * 210.00395 * 6 5 4 37 37 H 1.09004 * 109.47138 * 329.99711 * 6 5 4 38 38 H 1.00895 * 110.99604 * 303.95554 * 7 6 5 39 39 H 1.08999 * 109.46967 * 299.99602 * 8 7 6 40 40 H 1.09001 * 109.47370 * 59.99835 * 8 7 6 41 41 H 1.08997 * 109.46930 * 304.99402 * 13 9 8 42 42 H 1.09001 * 109.47176 * 64.99374 * 13 9 8 43 43 H 0.96997 * 119.99647 * 179.97438 * 17 16 14 44 44 H 1.08009 * 120.05649 * 0.29744 * 24 23 22 45 45 H 1.08001 * 119.66343 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.77372 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.15787 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8037 -1.8010 1.2221 6 6 3.3155 -2.5250 0.0035 7 7 4.6124 -1.9604 -0.3930 8 6 5.1427 -2.6429 -1.5807 9 6 6.4914 -2.0292 -1.9619 10 1 7.1626 -2.0654 -1.1039 11 6 6.2949 -0.6292 -2.3725 12 7 6.1429 0.4511 -2.6895 13 6 7.1021 -2.8195 -3.1209 14 6 8.4830 -2.2928 -3.4156 15 1 8.8847 -1.4758 -2.8347 16 6 9.2336 -2.8540 -4.4269 17 7 10.4389 -2.3948 -4.6838 18 14 8.5385 -4.2668 -5.4322 19 1 7.8117 -3.7263 -6.6090 20 1 9.6482 -5.1390 -5.8936 21 1 7.6030 -5.0581 -4.5932 22 7 3.0488 -2.1468 2.4522 23 6 2.4370 -1.2807 3.3004 24 6 2.3676 -1.1823 4.6925 25 6 1.6526 -0.1709 5.2686 26 6 0.9919 0.7645 4.4848 27 6 1.0462 0.6870 3.1095 28 6 1.7672 -0.3347 2.5063 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.4350 -3.5838 0.2334 37 1 2.6036 -2.4088 -0.8138 38 1 4.5414 -0.9662 -0.5491 39 1 5.2750 -3.7025 -1.3622 40 1 4.4434 -2.5272 -2.4088 41 1 7.1655 -3.8730 -2.8486 42 1 6.4750 -2.7100 -4.0057 43 1 10.9670 -2.7899 -5.3950 44 1 2.8821 -1.9021 5.3120 45 1 1.6011 -0.0985 6.3449 46 1 0.4311 1.5584 4.9554 47 1 0.5305 1.4177 2.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338487881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:28 Heat of formation + Delta-G solvation = 69.834744 kcal Electronic energy + Delta-G solvation = -26888.669507 eV Core-core repulsion = 23263.874800 eV Total energy + Delta-G solvation = -3624.794707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24487 -39.10730 -38.41683 -37.03034 -36.58481 -35.39908 -33.69566 -32.50859 -31.01906 -30.68771 -28.99770 -28.33967 -26.73175 -24.13366 -23.94603 -23.36999 -22.87810 -22.30927 -20.89258 -18.94668 -18.46336 -18.20533 -17.80658 -17.11146 -16.86081 -16.39978 -16.04862 -15.65745 -15.52128 -15.28603 -15.00636 -14.84345 -14.61227 -14.57261 -14.32282 -14.19436 -13.95594 -13.56141 -13.39907 -13.37096 -13.29464 -13.19382 -12.88176 -12.71930 -12.58406 -12.55081 -12.38942 -12.34295 -12.00740 -11.91534 -11.70454 -11.59686 -11.32583 -11.29982 -10.86140 -10.72737 -9.54872 -9.24227 -9.03957 -8.23773 -6.29819 -0.01300 0.60093 1.44580 1.46516 1.55716 1.57625 1.73043 1.91037 1.93141 2.42336 2.89718 3.04083 3.12063 3.21360 3.27617 3.45135 3.47123 3.83674 3.90637 4.02471 4.06791 4.14546 4.22055 4.33667 4.38633 4.45964 4.52048 4.53107 4.56421 4.62439 4.67901 4.72877 4.81466 4.85556 4.92358 4.94515 5.07093 5.11433 5.23781 5.26663 5.45948 5.50010 5.60434 5.63013 5.63601 5.83387 5.99938 6.12082 6.19839 6.26627 6.72368 6.80160 6.94650 7.34645 8.93357 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.002508 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.628673 B =11161.619693 C =11535.596758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.163 4.163 4 N -0.479 5.479 5 C 0.278 3.722 6 C 0.140 3.860 7 N -0.692 5.692 8 C 0.078 3.922 9 C 0.022 3.978 10 H 0.113 0.887 11 C 0.246 3.754 12 N -0.503 5.503 13 C -0.001 4.001 14 C -0.532 4.532 15 H 0.025 0.975 16 C 0.000 4.000 17 N -0.957 5.957 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.219 1.219 22 N -0.513 5.513 23 C 0.006 3.994 24 C -0.086 4.086 25 C -0.126 4.126 26 C -0.102 4.102 27 C -0.118 4.118 28 C 0.041 3.959 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.333 0.667 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.823 1.635 14.773 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 C -0.221 4.221 4 N -0.169 5.169 5 C 0.012 3.988 6 C 0.010 3.990 7 N -0.324 5.324 8 C -0.052 4.052 9 C 0.000 4.000 10 H 0.131 0.869 11 C -0.070 4.070 12 N -0.180 5.180 13 C -0.040 4.040 14 C -0.570 4.570 15 H 0.043 0.957 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.141 1.141 22 N -0.234 5.234 23 C -0.112 4.112 24 C -0.105 4.105 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.138 4.138 28 C -0.068 4.068 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.173 0.827 46 H 0.178 0.822 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.130 2.228 14.778 30.974 hybrid contribution 0.065 0.493 -1.459 1.541 sum -27.065 2.721 13.319 30.287 Atomic orbital electron populations 1.22168 0.91638 1.03314 1.04426 1.21669 0.96800 0.93966 0.85189 1.22189 1.00928 0.94565 1.04378 1.45705 1.41769 1.23923 1.05527 1.23728 0.92485 0.87338 0.95272 1.20481 0.89666 0.99431 0.89422 1.60404 1.26068 1.07984 1.37922 1.22073 0.92312 1.00400 0.90370 1.19116 0.99176 0.81321 1.00385 0.86879 1.29735 0.90812 0.95238 0.91199 1.81048 1.11630 1.14088 1.11259 1.19586 0.93535 0.97371 0.93515 1.21419 1.00760 1.17719 1.17100 0.95666 1.26095 0.94829 1.00261 0.98449 1.70101 1.12449 1.44425 1.32746 0.85669 0.78756 0.79025 0.79278 1.20068 1.21858 1.14098 1.70359 1.24617 1.28701 0.99688 1.19558 1.01156 0.95207 0.95294 1.20284 0.99981 0.99802 0.90458 1.20988 0.97806 0.94368 1.01496 1.21322 0.99173 0.99546 0.92108 1.20343 1.00902 0.97063 0.95537 1.19112 1.03385 1.00061 0.84272 0.91537 0.88312 0.92088 0.87545 0.93978 0.88536 0.91260 0.86154 0.90561 0.84984 0.85988 0.92398 0.91442 0.95092 0.92708 0.85378 0.82728 0.82235 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.25 71.98 0.67 -1.01 16 2 C 0.13 1.87 3.51 44.99 0.16 2.02 16 3 C -0.16 -2.47 9.25 71.98 0.67 -1.81 16 4 N -0.48 -10.13 2.65 -483.30 -1.28 -11.42 16 5 C 0.28 6.82 7.37 137.92 1.02 7.83 16 6 C 0.14 2.68 5.81 85.56 0.50 3.17 16 7 N -0.69 -15.98 6.49 -517.94 -3.36 -19.34 16 8 C 0.08 1.73 5.12 86.30 0.44 2.17 16 9 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 10 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 11 C 0.25 9.40 12.98 89.44 1.16 10.56 16 12 N -0.50 -21.19 18.54 20.01 0.37 -20.82 16 13 C 0.00 -0.04 3.49 29.85 0.10 0.06 16 14 C -0.53 -28.55 9.15 25.60 0.23 -28.32 16 15 H 0.02 1.55 7.84 -2.91 -0.02 1.52 16 16 C 0.00 0.00 5.47 84.66 0.46 0.46 16 17 N -0.96 -59.41 13.96 21.45 0.30 -59.11 16 18 Si 0.95 40.81 27.47 68.60 1.88 42.69 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.22 -7.85 6.54 99.48 0.65 -7.20 16 22 N -0.51 -15.40 11.27 -179.97 -2.03 -17.43 16 23 C 0.01 0.17 7.23 39.45 0.29 0.45 16 24 C -0.09 -1.93 10.05 22.25 0.22 -1.70 16 25 C -0.13 -2.03 9.96 22.02 0.22 -1.81 16 26 C -0.10 -1.46 10.03 22.31 0.22 -1.24 16 27 C -0.12 -2.04 8.77 22.32 0.20 -1.84 16 28 C 0.04 0.95 6.21 38.86 0.24 1.19 16 29 H 0.07 0.72 6.34 -2.38 -0.02 0.70 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.43 6.62 -2.39 -0.02 1.41 16 33 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.00 6.33 -2.39 -0.02 0.98 16 36 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.08 1.05 7.03 -2.38 -0.02 1.03 16 38 H 0.33 8.39 7.80 -89.70 -0.70 7.69 16 39 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 2.33 7.20 -2.39 -0.02 2.31 16 42 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 47 H 0.14 1.75 6.04 -2.91 -0.02 1.73 16 Total: -1.00 -76.77 387.58 2.88 -73.89 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.23 Total: 20.66 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 6.77 Total: -9.12 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -6.00 Total: -128.12 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.69 kcal Total: -76.77 2.88 -73.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338487881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.721 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds